cluster # 7404

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7404 cluster # 7404 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7404#0 length = 891 sequences # 1
consensus_7404#1 length = 728 sequences # 1

consensus_7404#2 length = 299 sequences # 1
consensus_7404#3 length = 238 sequences # 1

consensusID : consensus_7404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 891
fasta sequence

                              [GACTCCCCGCGGTCGGAGTTCACCACCACCAGCGGATCCCCCCGCGCGGCCGAGGATTCGACGCCGCCTCCCTCTCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCGGCCTCCCCGCAGCTGGCCACCCCGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCGCCGCAGTTCGAGAAGGCGGAGGCGAGGCCCGATGGATCCATGCTCGCCTTGTTCTGGGACACGGTCGCGCGCGTGCAAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGAACTGGTTCGGGCTGGATCAATCCAAGTACCAGTGGGCTCTCAACGAGTACTATGAGAGCAACGGAAAGGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAAAAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTTCTGCTGCAACTAGCAGGCCCGGACACAATCTGTAATCTGTTCGTGCCAAAGCGTTGAAAAAAGTCCAGTGCGGCAAAAAGCATTTTGTTGGCTCCTCGCACCAATGTGTAGCCCTACGTATTCTTTACAACATTTTGCGTTGTAATTGCATGGTGCTAATATTCTGCGAATGTTTTCTGTG]

[+] EMBL AK065012             [GACTCCCCGCGGTCGGAGTTCACCACCACCAGCGGATCCCCCCGCGCGGCCGAGGATTCGACGCCGCCTCCCTCTCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCGGCCTCCCCGCAGCTGGCCACCCCGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCGCCGCAGTTCGAGAAGGCGGAGGCGAGGCCCGATGGATCCATGCTCGCCTTGTTCTGGGACACGGTCGCGCGCGTGCAAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGAACTGGTTCGGGCTGGATCAATCCAAGTACCAGTGGGCTCTCAACGAGTACTATGAGAGCAACGGAAAGGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAAAAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTTCTGCTGCAACTAGCAGGCCCGGACACAATCTGTAATCTGTTCGTGCCAAAGCGTTGAAAAAAGTCCAGTGCGGCAAAAAGCATTTTGTTGGCTCCTCGCACCAATGTGTAGCCCTACGTATTCTTTACAACATTTTGCGTTGTAATTGCATGGTGCTAATATTCTGCGAATGTTTTCTGTG]




>consensus_7404#0
GACTCCCCGCGGTCGGAGTTCACCACCACCAGCGGATCCCCCCGCGCGGCCGAGGATTCG
ACGCCGCCTCCCTCTCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCG
GCCTCCCCGCAGCTGGCCACCCCGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCC
GCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCT
TCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCG
CCGCAGTTCGAGAAGGCGGAGGCGAGGCCCGATGGATCCATGCTCGCCTTGTTCTGGGAC
ACGGTCGCGCGCGTGCAAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGAACTGGTTC
GGGCTGGATCAATCCAAGTACCAGTGGGCTCTCAACGAGTACTATGAGAGCAACGGAAAG
GATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAA
AAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAG
TTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTGCTTCATTTGTGT
AGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTTCTGCTGCAAC
TAGCAGGCCCGGACACAATCTGTAATCTGTTCGTGCCAAAGCGTTGAAAAAAGTCCAGTG
CGGCAAAAAGCATTTTGTTGGCTCCTCGCACCAATGTGTAGCCCTACGTATTCTTTACAA
CATTTTGCGTTGTAATTGCATGGTGCTAATATTCTGCGAATGTTTTCTGTG

consensusID : consensus_7404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence

                              [CCCTTCGCCAGANGCCACCAGGGGGGAGAAAACATTTGCGCCCCGCGGGGAGCGCCGCACAGAGACNGAGAGGCCCCCGGGGGCGAAGGATTCNGGACAACGGCCGGACNCCCCNCGGGGCGGAGTTCACCACCCCCAGCGNATCCCCCCNCGCGGCCGAGGATTCGACGCCGCCGCCCNCGCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCGGCCNCCCCGCAGCCGGCCACCCAGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCGCCGCANTTCGAGAAGGCGGAGGCGAGGCCCAATGGATCCCTGCTCGCCTTGTTCTGGGACACGGTCCCGCGCGTGCCAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGACCCGGTTCGGGCTGGATCNATCCCAGTACCAGTGGGCTCTCCACCAGTTCTATTATATCTTCCGGAAAGGATTTGGACTCCGGGAAAGCTGCAAACCCGAAAGTACCTCCGTAGTAAAATGTAGGGTTTAAAAACCTGGATTTACTTTTGTATTATTTCANTGGGGACATCTCCTCCAATTCTCCCCAATTCCATTTCGATTTTATTGG]

[+] EMBL CA753620             [CCCTTCGCCAGANGCCACCAGGGGGGAGAAAACATTTGCGCCCCGCGGGGAGCGCCGCACAGAGACNGAGAGGCCCCCGGGGGCGAAGGATTCNGGACAACGGCCGGACNCCCCNCGGGGCGGAGTTCACCACCCCCAGCGNATCCCCCCNCGCGGCCGAGGATTCGACGCCGCCGCCCNCGCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCGGCCNCCCCGCAGCCGGCCACCCAGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCGCCGCANTTCGAGAAGGCGGAGGCGAGGCCCAATGGATCCCTGCTCGCCTTGTTCTGGGACACGGTCCCGCGCGTGCCAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGACCCGGTTCGGGCTGGATCNATCCCAGTACCAGTGGGCTCTCCACCAGTTCTATTATATCTTCCGGAAAGGATTTGGACTCCGGGAAAGCTGCAAACCCGAAAGTACCTCCGTAGTAAAATGTAGGGTTTAAAAACCTGGATTTACTTTTGTATTATTTCANTGGGGACATCTCCTCCAATTCTCCCCAATTCCATTTCGATTTTATTGG]




>consensus_7404#1
CCCTTCGCCAGANGCCACCAGGGGGGAGAAAACATTTGCGCCCCGCGGGGAGCGCCGCAC
AGAGACNGAGAGGCCCCCGGGGGCGAAGGATTCNGGACAACGGCCGGACNCCCCNCGGGG
CGGAGTTCACCACCCCCAGCGNATCCCCCCNCGCGGCCGAGGATTCGACGCCGCCGCCCN
CGCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCGGCCNCCCCGCAGC
CGGCCACCCAGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCCGCGAAGCTCTCCT
CCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCTTCCGCGAAGCTCT
CGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCGCCGCANTTCGAGA
AGGCGGAGGCGAGGCCCAATGGATCCCTGCTCGCCTTGTTCTGGGACACGGTCCCGCGCG
TGCCAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGACCCGGTTCGGGCTGGATCNAT
CCCAGTACCAGTGGGCTCTCCACCAGTTCTATTATATCTTCCGGAAAGGATTTGGACTCC
GGGAAAGCTGCAAACCCGAAAGTACCTCCGTAGTAAAATGTAGGGTTTAAAAACCTGGAT
TTACTTTTGTATTATTTCANTGGGGACATCTCCTCCAATTCTCCCCAATTCCATTTCGAT
TTTATTGG

consensusID : consensus_7404#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [GCCCAAAGCTTCTGTGGAGAATGTAGTTTTTGGATGGTGGTGGTGCTAGTCAATTGTGATTTTTCTTTCCCTGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAAAAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCT]

[+] EMBL CF195931             [GCCCAAAGCTTCTGTGGAGAATGTAGTTTTTGGATGGTGGTGGTGCTAGTCAATTGTGATTTTTCTTTCCCTGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAAAAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCT]




>consensus_7404#2
GCCCAAAGCTTCTGTGGAGAATGTAGTTTTTGGATGGTGGTGGTGCTAGTCAATTGTGAT
TTTTCTTTCCCTGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAA
ATGTAGGTCTAAAAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTC
TCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTG
CTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCT

consensusID : consensus_7404#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence

                              [GACATGCTCTTGCGATTCTGCGCCATTGCNGTTGCGATTTTATGTGCGTGATCTGTGCTGACCCATGGCACNATTGCCTGTTGTTTGCTTCATTTGTGTTAAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTNCTGCTGCAACTAGCAGGCCCGGACACCATCTGTAATCTGTTCGGGCCCAAGCGTTGAAATNAAGTCCAGTGCGCAAAGCATTTTGTT]

[+] EMBL BI805566             [GACATGCTCTTGCGATTCTGCGCCATTGCNGTTGCGATTTTATGTGCGTGATCTGTGCTGACCCATGGCACNATTGCCTGTTGTTTGCTTCATTTGTGTTAAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTNCTGCTGCAACTAGCAGGCCCGGACACCATCTGTAATCTGTTCGGGCCCAAGCGTTGAAATNAAGTCCAGTGCGCAAAGCATTTTGTT]




>consensus_7404#3
GACATGCTCTTGCGATTCTGCGCCATTGCNGTTGCGATTTTATGTGCGTGATCTGTGCTG
ACCCATGGCACNATTGCCTGTTGTTTGCTTCATTTGTGTTAAGCTAAGCTAGAGAACTGT
GTGAAGTTTCACTGGGAAGTTGATACCTCTNCTGCTGCAACTAGCAGGCCCGGACACCAT
CTGTAATCTGTTCGGGCCCAAGCGTTGAAATNAAGTCCAGTGCGCAAAGCATTTTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7404#2      ------------------------------------------------------------
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      GACTCCCCGCGGTCGGAGTTCACCACCACCAGCGGATCCCCCCGCGCGGCCGAGGATTCG 60
consensus_7404#1      ----------------------------CCCTTCGCCAGANGCCACCAGGGGGGAGAAAA 32
                                                                                  

consensus_7404#2      ------------------------------------------------------------
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      ACGCCGCCTCCCTCTCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCG 120
consensus_7404#1      CATTTGCGCCCCGCGGGGAGCGCCGCACAGAGACNGAGAGGCCCCCGGGGGCGAAGGATT 92
                                                                                  

consensus_7404#2      ------------------------------------------------------------
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      GCCTCCCCGCAGCTGGCCACCCCGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCC 180
consensus_7404#1      CNGGACAACGGCCGGACNCCCCNCGGGGCGGAGTTCACCACCCCCAGCGNATCCCCCCNC 152
                                                                                  

consensus_7404#2      ------------------------------------------------------------
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      GCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCT 240
consensus_7404#1      GCGGCCGAGGATTCGACGCCGCCGCCCNCGCCGCCGCGGGCCGAGCAGCCGCCGGTCAAG 212
                                                                                  

consensus_7404#2      ------------------------------------------------------------
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      TCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCG 300
consensus_7404#1      GAGGAGGCGCCGGCGGCCNCCCCGCAGCCGGCCACCCAGCCGCCGGTGAAGACGGTCTCA 272
                                                                                  

consensus_7404#2      ------------------------------------------------------------
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      CCGCAGTTCGAGAAGGCGGAGGCGAGGCCCGATGGATCCATGCTCGCCTTGTTCTGGGAC 360
consensus_7404#1      CCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTG 332
                                                                                  

consensus_7404#2      ----------------------------------------------GCCCAAAGCTTCTG 14
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      ACGGTCGCGCGCGTGCAAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGAACTGGTTC 420
consensus_7404#1      CAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCG 392
                                                                                  

consensus_7404#2      TGGAGAATGTAGTTTTTGGATGGTGGTGGTGCTAGTCAAT--TGTGATTTTTCTTTCCCT 72
consensus_7404#3      -----GACATGCTCTTGCGATTCTG-CGCCATTG--CNGT--TGCGATTTTA-TGTGCGT 49
consensus_7404#0      GGGCTGGATCAATCCAAGTACCAGTGGGCTCTCAACGAGTACTATGAGAGCAACGGAAAG 480
consensus_7404#1      GTGCAGGTGCCGCCGCCGCANTTCGAGAAGGCGGAGGCGAGGCCCAATGGATCCCTGCTC 452
                                         *                          *             

consensus_7404#2      GATATGGAGTCAGGGAAAGCTGCGA---AGCCGAAGG---AACTCGGTAGTAAAATGTAG 126
consensus_7404#3      GATCTGTGCTGACCCATGGCACNAT---TGCCTGTTGTTTGCTTCATTTGTGTTAAGCTA 106
consensus_7404#0      GATATGGAGTCAGGGAAAGCTGCGA---AGCCGAAGG---AACTCGGTAGTAAAATGTAG 534
consensus_7404#1      GCCTTGTTCTGGGACACGGTCCCGCGCGTGCCAGAAGCGCACGCCAGCTTGGACGAGTAC 512
                      *   **   *     *  *          ***    *       *           *   

consensus_7404#2      GTCTAAA---AAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCG 183
consensus_7404#3      AGCTAGA---GAACTGTGTGAAGTTTCACTGGG---AAGTTGATACCTCTNCTGCTGCAA 160
consensus_7404#0      GTCTAAA---AAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCG 591
consensus_7404#1      ATCTCGACCCGGTTCGGGCTGGATCNATCCCAGTACCAGTGGGC-TCTCCACCAGTTCTA 571
                        **  *        *       *        *     *  *    ***  *   *    

consensus_7404#2      CCAATTCAGTTCGATTTTATGTCGTATCTGTCTA---CCATGCA--GCAATTCCTTTGTT 238
consensus_7404#3      CTAGCAGGCCCGGACACCATCTGTAATCTGTTCGGGCCCAAGCGTTGAAATNAAGTCCAG 220
consensus_7404#0      CCAATTCAGTTCGATTTTATGTCGTATCTGTCTA---CCATGCA--GCAATTCCTTTGTT 646
consensus_7404#1      TTATATCTTCCGGAAAGGATTTGGACTCCGGGAAAGCTGCAAACCCGAAAGTACCTCCGT 631
                        *         **    ** *    ** *                * **     *    

consensus_7404#2      TGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACC 298
consensus_7404#3      TGCGCAAAGCATTTTGTT------------------------------------------ 238
consensus_7404#0      TGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACC 706
consensus_7404#1      AGTAAAATGTAGGGT-TTAAAAACCTGGATTTACTTTTGTATTATTTCANTGGGGACATC 690
                       *    *          *                                          

consensus_7404#2      T----------------------------------------------------------- 299
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      TCTTCTGCTGCAACTAGCAGGCCCGGACACAATCTGTAATCTGTTCGTGCCAAAGCGTTG 766
consensus_7404#1      TCCTCCAATTCTCCCCAATTCCATTTCGATTTTATTGG---------------------- 728
                                                                                  

consensus_7404#2      ------------------------------------------------------------
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      AAAAAAGTCCAGTGCGGCAAAAAGCATTTTGTTGGCTCCTCGCACCAATGTGTAGCCCTA 826
consensus_7404#1      ------------------------------------------------------------
                                                                                  

consensus_7404#2      ------------------------------------------------------------
consensus_7404#3      ------------------------------------------------------------
consensus_7404#0      CGTATTCTTTACAACATTTTGCGTTGTAATTGCATGGTGCTAATATTCTGCGAATGTTTT 886
consensus_7404#1      ------------------------------------------------------------
                                                                                  

consensus_7404#2      -----
consensus_7404#3      -----
consensus_7404#0      CTGTG 891
consensus_7404#1      -----