These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 891 fasta sequence [GACTCCCCGCGGTCGGAGTTCACCACCACCAGCGGATCCCCCCGCGCGGCCGAGGATTCGACGCCGCCTCCCTCTCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCGGCCTCCCCGCAGCTGGCCACCCCGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCGCCGCAGTTCGAGAAGGCGGAGGCGAGGCCCGATGGATCCATGCTCGCCTTGTTCTGGGACACGGTCGCGCGCGTGCAAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGAACTGGTTCGGGCTGGATCAATCCAAGTACCAGTGGGCTCTCAACGAGTACTATGAGAGCAACGGAAAGGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAAAAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTTCTGCTGCAACTAGCAGGCCCGGACACAATCTGTAATCTGTTCGTGCCAAAGCGTTGAAAAAAGTCCAGTGCGGCAAAAAGCATTTTGTTGGCTCCTCGCACCAATGTGTAGCCCTACGTATTCTTTACAACATTTTGCGTTGTAATTGCATGGTGCTAATATTCTGCGAATGTTTTCTGTG] [+] EMBL AK065012 [GACTCCCCGCGGTCGGAGTTCACCACCACCAGCGGATCCCCCCGCGCGGCCGAGGATTCGACGCCGCCTCCCTCTCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCGGCCTCCCCGCAGCTGGCCACCCCGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCGCCGCAGTTCGAGAAGGCGGAGGCGAGGCCCGATGGATCCATGCTCGCCTTGTTCTGGGACACGGTCGCGCGCGTGCAAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGAACTGGTTCGGGCTGGATCAATCCAAGTACCAGTGGGCTCTCAACGAGTACTATGAGAGCAACGGAAAGGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAAAAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTTCTGCTGCAACTAGCAGGCCCGGACACAATCTGTAATCTGTTCGTGCCAAAGCGTTGAAAAAAGTCCAGTGCGGCAAAAAGCATTTTGTTGGCTCCTCGCACCAATGTGTAGCCCTACGTATTCTTTACAACATTTTGCGTTGTAATTGCATGGTGCTAATATTCTGCGAATGTTTTCTGTG] consensusID : consensus_7404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [CCCTTCGCCAGANGCCACCAGGGGGGAGAAAACATTTGCGCCCCGCGGGGAGCGCCGCACAGAGACNGAGAGGCCCCCGGGGGCGAAGGATTCNGGACAACGGCCGGACNCCCCNCGGGGCGGAGTTCACCACCCCCAGCGNATCCCCCCNCGCGGCCGAGGATTCGACGCCGCCGCCCNCGCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCGGCCNCCCCGCAGCCGGCCACCCAGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCGCCGCANTTCGAGAAGGCGGAGGCGAGGCCCAATGGATCCCTGCTCGCCTTGTTCTGGGACACGGTCCCGCGCGTGCCAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGACCCGGTTCGGGCTGGATCNATCCCAGTACCAGTGGGCTCTCCACCAGTTCTATTATATCTTCCGGAAAGGATTTGGACTCCGGGAAAGCTGCAAACCCGAAAGTACCTCCGTAGTAAAATGTAGGGTTTAAAAACCTGGATTTACTTTTGTATTATTTCANTGGGGACATCTCCTCCAATTCTCCCCAATTCCATTTCGATTTTATTGG] [+] EMBL CA753620 [CCCTTCGCCAGANGCCACCAGGGGGGAGAAAACATTTGCGCCCCGCGGGGAGCGCCGCACAGAGACNGAGAGGCCCCCGGGGGCGAAGGATTCNGGACAACGGCCGGACNCCCCNCGGGGCGGAGTTCACCACCCCCAGCGNATCCCCCCNCGCGGCCGAGGATTCGACGCCGCCGCCCNCGCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCGGCCNCCCCGCAGCCGGCCACCCAGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCGCCGCANTTCGAGAAGGCGGAGGCGAGGCCCAATGGATCCCTGCTCGCCTTGTTCTGGGACACGGTCCCGCGCGTGCCAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGACCCGGTTCGGGCTGGATCNATCCCAGTACCAGTGGGCTCTCCACCAGTTCTATTATATCTTCCGGAAAGGATTTGGACTCCGGGAAAGCTGCAAACCCGAAAGTACCTCCGTAGTAAAATGTAGGGTTTAAAAACCTGGATTTACTTTTGTATTATTTCANTGGGGACATCTCCTCCAATTCTCCCCAATTCCATTTCGATTTTATTGG] consensusID : consensus_7404#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [GCCCAAAGCTTCTGTGGAGAATGTAGTTTTTGGATGGTGGTGGTGCTAGTCAATTGTGATTTTTCTTTCCCTGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAAAAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCT] [+] EMBL CF195931 [GCCCAAAGCTTCTGTGGAGAATGTAGTTTTTGGATGGTGGTGGTGCTAGTCAATTGTGATTTTTCTTTCCCTGATATGGAGTCAGGGAAAGCTGCGAAGCCGAAGGAACTCGGTAGTAAAATGTAGGTCTAAAAAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCGCCAATTCAGTTCGATTTTATGTCGTATCTGTCTACCATGCAGCAATTCCTTTGTTTGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCT] consensusID : consensus_7404#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [GACATGCTCTTGCGATTCTGCGCCATTGCNGTTGCGATTTTATGTGCGTGATCTGTGCTGACCCATGGCACNATTGCCTGTTGTTTGCTTCATTTGTGTTAAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTNCTGCTGCAACTAGCAGGCCCGGACACCATCTGTAATCTGTTCGGGCCCAAGCGTTGAAATNAAGTCCAGTGCGCAAAGCATTTTGTT] [+] EMBL BI805566 [GACATGCTCTTGCGATTCTGCGCCATTGCNGTTGCGATTTTATGTGCGTGATCTGTGCTGACCCATGGCACNATTGCCTGTTGTTTGCTTCATTTGTGTTAAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACCTCTNCTGCTGCAACTAGCAGGCCCGGACACCATCTGTAATCTGTTCGGGCCCAAGCGTTGAAATNAAGTCCAGTGCGCAAAGCATTTTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7404#2 ------------------------------------------------------------ consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 GACTCCCCGCGGTCGGAGTTCACCACCACCAGCGGATCCCCCCGCGCGGCCGAGGATTCG 60 consensus_7404#1 ----------------------------CCCTTCGCCAGANGCCACCAGGGGGGAGAAAA 32 consensus_7404#2 ------------------------------------------------------------ consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 ACGCCGCCTCCCTCTCCGCCGCGGGCCGAGCAGCCGCCGGTCAAGGAGGAGGCGCCGGCG 120 consensus_7404#1 CATTTGCGCCCCGCGGGGAGCGCCGCACAGAGACNGAGAGGCCCCCGGGGGCGAAGGATT 92 consensus_7404#2 ------------------------------------------------------------ consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 GCCTCCCCGCAGCTGGCCACCCCGCCGCCGGTGAAGACGGTCTCACCGCCGCTGCCCGCC 180 consensus_7404#1 CNGGACAACGGCCGGACNCCCCNCGGGGCGGAGTTCACCACCCCCAGCGNATCCCCCCNC 152 consensus_7404#2 ------------------------------------------------------------ consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 GCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTGCAGGTGCCACTGCCT 240 consensus_7404#1 GCGGCCGAGGATTCGACGCCGCCGCCCNCGCCGCCGCGGGCCGAGCAGCCGCCGGTCAAG 212 consensus_7404#2 ------------------------------------------------------------ consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 TCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCGGTGCAGGTGCCGCCG 300 consensus_7404#1 GAGGAGGCGCCGGCGGCCNCCCCGCAGCCGGCCACCCAGCCGCCGGTGAAGACGGTCTCA 272 consensus_7404#2 ------------------------------------------------------------ consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 CCGCAGTTCGAGAAGGCGGAGGCGAGGCCCGATGGATCCATGCTCGCCTTGTTCTGGGAC 360 consensus_7404#1 CCGCCGCTGCCCGCCGCGAAGCTCTCCTCCGCCGCCGCCCCTCGGCCTCCGCCGCCGGTG 332 consensus_7404#2 ----------------------------------------------GCCCAAAGCTTCTG 14 consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 ACGGTCGCGCGCGTGCAAGAAGCGCACGCCAGCTTGGACGAGTACATCTCGAACTGGTTC 420 consensus_7404#1 CAGGTGCCACTGCCTTCCGCGAAGCTCTCGGCCCCTAGGCCCCCGCCGACGCCGCCGCCG 392 consensus_7404#2 TGGAGAATGTAGTTTTTGGATGGTGGTGGTGCTAGTCAAT--TGTGATTTTTCTTTCCCT 72 consensus_7404#3 -----GACATGCTCTTGCGATTCTG-CGCCATTG--CNGT--TGCGATTTTA-TGTGCGT 49 consensus_7404#0 GGGCTGGATCAATCCAAGTACCAGTGGGCTCTCAACGAGTACTATGAGAGCAACGGAAAG 480 consensus_7404#1 GTGCAGGTGCCGCCGCCGCANTTCGAGAAGGCGGAGGCGAGGCCCAATGGATCCCTGCTC 452 * * consensus_7404#2 GATATGGAGTCAGGGAAAGCTGCGA---AGCCGAAGG---AACTCGGTAGTAAAATGTAG 126 consensus_7404#3 GATCTGTGCTGACCCATGGCACNAT---TGCCTGTTGTTTGCTTCATTTGTGTTAAGCTA 106 consensus_7404#0 GATATGGAGTCAGGGAAAGCTGCGA---AGCCGAAGG---AACTCGGTAGTAAAATGTAG 534 consensus_7404#1 GCCTTGTTCTGGGACACGGTCCCGCGCGTGCCAGAAGCGCACGCCAGCTTGGACGAGTAC 512 * ** * * * *** * * * consensus_7404#2 GTCTAAA---AAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCG 183 consensus_7404#3 AGCTAGA---GAACTGTGTGAAGTTTCACTGGG---AAGTTGATACCTCTNCTGCTGCAA 160 consensus_7404#0 GTCTAAA---AAGCTGGATTACATCTGTATATGTCAATGGGGACATCTCTTCGATTCTCG 591 consensus_7404#1 ATCTCGACCCGGTTCGGGCTGGATCNATCCCAGTACCAGTGGGC-TCTCCACCAGTTCTA 571 ** * * * * * * *** * * consensus_7404#2 CCAATTCAGTTCGATTTTATGTCGTATCTGTCTA---CCATGCA--GCAATTCCTTTGTT 238 consensus_7404#3 CTAGCAGGCCCGGACACCATCTGTAATCTGTTCGGGCCCAAGCGTTGAAATNAAGTCCAG 220 consensus_7404#0 CCAATTCAGTTCGATTTTATGTCGTATCTGTCTA---CCATGCA--GCAATTCCTTTGTT 646 consensus_7404#1 TTATATCTTCCGGAAAGGATTTGGACTCCGGGAAAGCTGCAAACCCGAAAGTACCTCCGT 631 * ** ** * ** * * ** * consensus_7404#2 TGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACC 298 consensus_7404#3 TGCGCAAAGCATTTTGTT------------------------------------------ 238 consensus_7404#0 TGCTTCATTTGTGTAGCTAAGCTAGAGAACTGTGTGAAGTTTCACTGGGAAGTTGATACC 706 consensus_7404#1 AGTAAAATGTAGGGT-TTAAAAACCTGGATTTACTTTTGTATTATTTCANTGGGGACATC 690 * * * consensus_7404#2 T----------------------------------------------------------- 299 consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 TCTTCTGCTGCAACTAGCAGGCCCGGACACAATCTGTAATCTGTTCGTGCCAAAGCGTTG 766 consensus_7404#1 TCCTCCAATTCTCCCCAATTCCATTTCGATTTTATTGG---------------------- 728 consensus_7404#2 ------------------------------------------------------------ consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 AAAAAAGTCCAGTGCGGCAAAAAGCATTTTGTTGGCTCCTCGCACCAATGTGTAGCCCTA 826 consensus_7404#1 ------------------------------------------------------------ consensus_7404#2 ------------------------------------------------------------ consensus_7404#3 ------------------------------------------------------------ consensus_7404#0 CGTATTCTTTACAACATTTTGCGTTGTAATTGCATGGTGCTAATATTCTGCGAATGTTTT 886 consensus_7404#1 ------------------------------------------------------------ consensus_7404#2 ----- consensus_7404#3 ----- consensus_7404#0 CTGTG 891 consensus_7404#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||