cluster # 7406

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7406 cluster # 7406 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7406#0 length = 998 sequences # 3

consensus_7406#1 length = 627 sequences # 1

consensusID : consensus_7406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 998
fasta sequence

                              [GCATTTGAATTGAAAGATCAAGAGAGAAATCAAGAAGAGATCGAGAGGATCGAAGCTGTAATCTCCGTAGAGATGGCGGCGGCGGCAATGGATGACTCGTTCAGGAGGGCGGGGGCGATACCGTTCAAGTGGGAGATCTGCCCGGGGACGCCCAAGCACGCCAGGAGCGCGAGCGCCTCCGCGGCGTCGGCGGCGGTGGTGTCGCCGGTGCCGCCGGCGCTGGCCAAGGTGGCGACGAGGCAGCAGCTGGCGCTGCCTCCCTGCATGACGTCGCCGCGCGCCTCGCCGTCGCCGTACTACCACTCCCCGCGCCTCTCCTCCGCCGCCGCGTGCAGGTCGGCGGCGTCGGCCTCGCCGTGCCGGAGCAGGTACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCAC-GGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCAGCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTGTTGATTTGATCAAGTTAAAGTTGTGAAGGATTTATTAGCTAGGAGAAATTAAAGGAATTAGCAGCTTTAATTTTTGCGTTTTGTTGCGTGGTGAGGATGAGAGAGCCCAGTTCGATCGATTACATCAGACTGGTGGCTGTTTGTGTGTGTCATGTGTAAAGAAGATAGACATGAACAGTTTACATACTCCATTGCATTTCATTTTAGTAGGGAGTCCAC]

[+] EMBL AK107888             [GCATTTGAATTGAAAGATCAAGAGAGAAATCAAGAAGAGATCGAGAGGATCGAAGCTGTAATCTCCGTAGAGATGGCGGCGGCGGCAATGGATGACTCGTTCAGGAGGGCGGGGGCGATACCGTTCAAGTGGGAGATCTGCCCGGGGACGCCCAAGCACGCCAGGAGCGCGAGCGCCTCCGCGGCGTCGGCGGCGGTGGTGTCGCCGGTGCCGCCGGCGCTGGCCAAGGTGGCGACGAGGCAGCAGCTGGCGCTGCCTCCCTGCATGACGTCGCCGCGCGCCTCGCCGTCGCCGTACTACCACTCCCCGCGCCTCTCCTCCGCCGCCGCGTGCAGGTCGGCGGCGTCGGCCTCGCCGTGCCGGAGCAGGTACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCAC GGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCAGCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTGTTGATTTGATCAAGTTAAAGTTGTGAAGGATTTATTAGCTAGGAGAAATTAAAGGAATTAGCAGCTTTAATTTTTGCGTTTTGTTGCGTGGTGAGGATGAGAGAGCCCAGTTCGATCGATTACATCAGACTGGTGGCTGTTTGTGTGTGTCATGTGTAAAGAAGATAGACATG                                              ]
[+] EMBL CB660416             [          TGAAAGATCAAGAGAGAAATCAAGAAGAGATCCAGAGGATCGAAGCTGTAATCTCCGTAGAGATGGCGGCGGCGGCAATGGATGACTCGTTCAGGAGGGCGGGGGCGATACCGTTCAAGTGGGAGATCTGCCCGGGGACGCCCAAGCACGCCAGGAGCGCGAGCGCCTCCGCGGCGTCGGCGGCGGTGGTGTCGCCGGTGCCGCCGGCGCTGGCCAAGGTGGCGACGAGGCAGCAGCTGGCGCTGCCTCCCTGCATGACGTCGCCGCGCGCCTCGCCGTCGCCGTACTACCACTCCCCGCGCCTCTCCTCCGCCGCCGCGTGCAGGTCGGCGGCGTCGGCCTCGCCGTGCCGGAGCAGGTACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCAC GGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCACCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATT                                                                                                                                                                                                                            ]
[-] EMBL CB660417             [                                                                                                                                                                                                                                                                                                                                                                                                                            TCCTTGACCTCGCTCCCCGAGCCACCACGGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCAGCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTGTTGATTTGATCAAGTTAAAGTTGTGAAGGATTTATTAGCTAGGAGAAATTAAAGGAATTAGCAGCTTTAATTTTTGCGTTTTGTTGCGTGGTGAGGATGAGAGAGCCCAGTTCGATCGATTACATCAGACTGGTGGGGGTTTGTGTGTGTCATGTGTAAAGAAGATAGACATGAACAGTTTACATACTCCATTGCATTTCATTTTAGTAGGGAGTCCAC]




>consensus_7406#0
GCATTTGAATTGAAAGATCAAGAGAGAAATCAAGAAGAGATCGAGAGGATCGAAGCTGTA
ATCTCCGTAGAGATGGCGGCGGCGGCAATGGATGACTCGTTCAGGAGGGCGGGGGCGATA
CCGTTCAAGTGGGAGATCTGCCCGGGGACGCCCAAGCACGCCAGGAGCGCGAGCGCCTCC
GCGGCGTCGGCGGCGGTGGTGTCGCCGGTGCCGCCGGCGCTGGCCAAGGTGGCGACGAGG
CAGCAGCTGGCGCTGCCTCCCTGCATGACGTCGCCGCGCGCCTCGCCGTCGCCGTACTAC
CACTCCCCGCGCCTCTCCTCCGCCGCCGCGTGCAGGTCGGCGGCGTCGGCCTCGCCGTGC
CGGAGCAGGTACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGAC
CTCGCTCCCCGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCAC
GACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAA
GGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCC
TCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCG
TCTTTCTCCTTCGCTCGCGGCGGCGGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCAG
CAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTGT
TGATTTGATCAAGTTAAAGTTGTGAAGGATTTATTAGCTAGGAGAAATTAAAGGAATTAG
CAGCTTTAATTTTTGCGTTTTGTTGCGTGGTGAGGATGAGAGAGCCCAGTTCGATCGATT
ACATCAGACTGGTGGCTGTTTGTGTGTGTCATGTGTAAAGAAGATAGACATGAACAGTTT
ACATACTCCATTGCATTTCATTTTAGTAGGGAGTCCAC

consensusID : consensus_7406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [TACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCCGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTATTTCTCCTTCGCTCGCGGATGCTGGGAACCGGATCAGGGTCGCCGCCGGAGCGAGGTATCACGAGGAGGTGGAGGCGTCCAGTAGCACGTGTGTCTTATGATCATCATGCAGACATTGATGATTTGATCAAGGTACTGATGTGAAGGATCTATTACTGTAGGACACACTAAAGGATACTAGACATTTGATTCTGGCAGGTTGGGTGGATGGGAGGATGAGAGAGCTCACGTAGTAGCGATACATCAGACTGGAAGGTGGTTGGGCGTGTCATGCGTAAAGAAAATATACATGACCAGGTTACATACTCCATTGCATTTGGAAATAAAAAGAATA]

[+] EMBL CA758422             [TACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCCCGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCCGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTATTTCTCCTTCGCTCGCGGATGCTGGGAACCGGATCAGGGTCGCCGCCGGAGCGAGGTATCACGAGGAGGTGGAGGCGTCCAGTAGCACGTGTGTCTTATGATCATCATGCAGACATTGATGATTTGATCAAGGTACTGATGTGAAGGATCTATTACTGTAGGACACACTAAAGGATACTAGACATTTGATTCTGGCAGGTTGGGTGGATGGGAGGATGAGAGAGCTCACGTAGTAGCGATACATCAGACTGGAAGGTGGTTGGGCGTGTCATGCGTAAAGAAAATATACATGACCAGGTTACATACTCCATTGCATTTGGAAATAAAAAGAATA]




>consensus_7406#1
TACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGACCTCGCTCCC
CGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCACGACGAGCCC
GCGGCGGCGCCGGCGTACGGGTGCTTCCCGCTCCCGTTGCTCCGGAGGAAAGGCAGCAGC
AAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCCTCCGGCAGC
TTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCGTATTTCTCC
TTCGCTCGCGGATGCTGGGAACCGGATCAGGGTCGCCGCCGGAGCGAGGTATCACGAGGA
GGTGGAGGCGTCCAGTAGCACGTGTGTCTTATGATCATCATGCAGACATTGATGATTTGA
TCAAGGTACTGATGTGAAGGATCTATTACTGTAGGACACACTAAAGGATACTAGACATTT
GATTCTGGCAGGTTGGGTGGATGGGAGGATGAGAGAGCTCACGTAGTAGCGATACATCAG
ACTGGAAGGTGGTTGGGCGTGTCATGCGTAAAGAAAATATACATGACCAGGTTACATACT
CCATTGCATTTGGAAATAAAAAGAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7406#0      GCATTTGAATTGAAAGATCAAGAGAGAAATCAAGAAGAGATCGAGAGGATCGAAGCTGTA 60
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      ATCTCCGTAGAGATGGCGGCGGCGGCAATGGATGACTCGTTCAGGAGGGCGGGGGCGATA 120
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      CCGTTCAAGTGGGAGATCTGCCCGGGGACGCCCAAGCACGCCAGGAGCGCGAGCGCCTCC 180
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      GCGGCGTCGGCGGCGGTGGTGTCGCCGGTGCCGCCGGCGCTGGCCAAGGTGGCGACGAGG 240
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      CAGCAGCTGGCGCTGCCTCCCTGCATGACGTCGCCGCGCGCCTCGCCGTCGCCGTACTAC 300
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      CACTCCCCGCGCCTCTCCTCCGCCGCCGCGTGCAGGTCGGCGGCGTCGGCCTCGCCGTGC 360
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      CGGAGCAGGTACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGAC 420
consensus_7406#1      ---------TACGCCGGCGGCGGCAGCGCGTACCGCCCCCGCCCCACCGCCTTCCTCGAC 51
                               ***************************************************

consensus_7406#0      CTCGCTCCCCGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCAC 480
consensus_7406#1      CTCGCTCCCCGAGCCACCACGGCGCCGGACTTGTACGGCGCCGCCCACGAAGCTGATCAC 111
                      ************************************************************

consensus_7406#0      GACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCTGCTCCCGTTGCTCCGGAGGAAA 540
consensus_7406#1      GACGAGCCCGCGGCGGCGCCGGCGTACGGGTGCTTCCCGCTCCCGTTGCTCCGGAGGAAA 171
                      ************************************* **********************

consensus_7406#0      GGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCC 600
consensus_7406#1      GGCAGCAGCAAGAAACGCGGCGGCGGCGGGTATTCGTCCGGCTCCGGCGGCTCGAGCTCC 231
                      ************************************************************

consensus_7406#0      TCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCG 660
consensus_7406#1      TCCGGCAGCTTCAGGTCGGACGGCGAGCCGGGCGGTGGGCTGCGGCGGTCGGCGTCGTCG 291
                      ************************************************************

consensus_7406#0      TCTTTCTCCTTCGCTCGCGGCGGC-GGCAACCGGATCAGGCTCGCCGCCGGAGCGAGGCA 719
consensus_7406#1      TATTTCTCCTTCGCTCGCGGATGCTGGGAACCGGATCAGGGTCGCCGCCGGAGCGAGGTA 351
                      * ******************  ** ** ************ ***************** *

consensus_7406#0      GCAGGAGGAGGTGGAGGCGGCCAGTGGCAGCTGGTTCTTCTGATCATCATGTCGCCATTG 779
consensus_7406#1      TCACGAGGAGGTGGAGGCGTCCAGTAGCACGTGTGTCTTATGATCATCATGCAGACATTG 411
                       ** *************** ***** ***  **  **** ***********  * *****

consensus_7406#0      TTGATTTGATCAAGTTAAAGTTGTGAAGGATTTATTAGC-TAGGAGAAATTAAAGGAATT 838
consensus_7406#1      ATGATTTGATCAAGGTACTGATGTGAAGGATCTATTACTGTAGGACACACTAAAGGATAC 471
                       ************* **  * ********** *****   ***** * * *******   

consensus_7406#0      AGCAGCTTTAATTTTTGC-GTTTTGTTGCGTGGTGAGGATGAGAGAGCCCAGTTCGATCG 897
consensus_7406#1      TAGACATTTGATTCTGGCAGGTTGGGTGGATGG-GAGGATGAGAGAGCTCACGTAGTAGC 530
                         *  *** *** * ** * ** * **  *** ************** **  * *    

consensus_7406#0      ATTACATCAGACTGGTGGCTGTTTGTGTGTGTCATGTGTAAAGAAGATAGACATGAACAG 957
consensus_7406#1      GATACATCAGACTGGAAGGTGGTTGGGCGTGTCATGCGTAAAGAAAATATACATGACCAG 590
                        *************  * ** *** * ******** ******** *** ****** ***

consensus_7406#0      TTTACATACTCCATTGCATTTCATTTTAGTAGGGAGTCCAC 998
consensus_7406#1      GTTACATACTCCATTGCATTTGGAAATAAAAAGAATA---- 627
                       ********************     **  * * *