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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1178 fasta sequence
[GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCCTTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCTGAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGTACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCGGATGAACATC-ACCCG-TTCTTGGACACAACCCCCATGACCTTG-TTGGGNTTCTTGAGATTTACCCCAAGCTCGAGTTTTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGCCATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACATCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGAAGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCGGCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGGTGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGGCGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAATTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTACCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCAATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGGGTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCATCCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTCTTTGCAAAATCAACTGTACCCTCAAAAAAAAAAAAAAA]
[+] EMBL OSS5085A [GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCCTTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCTGAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGTACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCGGATGAACATCAACCCG TTCTTGGACACAACCCCCATGACCTTGTTTGGGNTTCTTGAGATTTACCCCAAGCTCGAGTTTTA ]
[+] EMBL AK059900 [ CAACATTCCTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCCTTGCGACAATATGGTGGATTTTGGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCTGAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGTACCACCTGGCTCAAAGCCCTCGCCTTTGCAACCCTGAACCGTTCGACTTACCCACCATCGGATGAACATC ACCCGCTCCTCGAACACAACCCCCATGACCTTG TTGGGTTTCTTGAGATTTACCCCAAGCTCGAGTTGTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGCCATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACATCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGAAGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCGGCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGGTGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGGCGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAATTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTACCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCAATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGGGTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCATCCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATCATTTC ]
[-] EMBL CF278657 [ CGGTGACTGGAGCAATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGGGTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCATCCAACCATGGTGCTTTTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTCTTTGCAAAATCAACTGTACCCTCAAAAAAAAAAAAAAA]
consensusID : consensus_7409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence
[GGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTNTTTTGGGAGNTTCTTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097472 [GGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTNTTTTGGGAGNTTCTTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7409#0 GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCC 60
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 TTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCT 120
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 GAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGT 180
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 ACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCG 240
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 GATGAACATCACCCGTTCTTGGACACAACCCCCATGACCTTGTTGGGNTTCTTGAGATTT 300
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 ACCCCAAGCTCGAGTTTTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGC 360
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 CATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACA 420
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 TCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGA 480
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 AGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCG 540
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 GCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGG 600
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 TGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGG 660
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 CGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAA 720
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 TTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTA 780
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 CCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCA 840
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 ATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGG 900
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 GTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCAT 960
consensus_7409#1 ------------------------------------------------------------
consensus_7409#0 CCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTA 1020
consensus_7409#1 -----------------------------------------------GGCTGGCTAATTA 13
*************
consensus_7409#0 CCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATC 1080
consensus_7409#1 CCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTGCTTTTTCATTATC 73
******************************** ******* *******************
consensus_7409#0 ATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTC 1140
consensus_7409#1 ATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTNTTTTGGGAGNTTC 133
******************* ********** ******* ******* ********* ***
consensus_7409#0 TTTGCAAAATCAACTGTACCCTCA------AAAAAAAAAAAAAA---------------- 1178
consensus_7409#1 TTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 193
***************** ****** **************
consensus_7409#0 -------
consensus_7409#1 AAAAAAA 200
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||