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Oryza sativa
cluster # 7409 cluster # 7409       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7409#0 length = 1178 sequences # 3  
consensus_7409#1 length = 200 sequences # 1  

consensusID : consensus_7409#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1178
fasta sequence
                              [GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCCTTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCTGAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGTACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCGGATGAACATC-ACCCG-TTCTTGGACACAACCCCCATGACCTTG-TTGGGNTTCTTGAGATTTACCCCAAGCTCGAGTTTTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGCCATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACATCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGAAGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCGGCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGGTGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGGCGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAATTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTACCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCAATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGGGTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCATCCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTCTTTGCAAAATCAACTGTACCCTCAAAAAAAAAAAAAAA]

[+] EMBL OSS5085A             [GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCCTTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCTGAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGTACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCGGATGAACATCAACCCG TTCTTGGACACAACCCCCATGACCTTGTTTGGGNTTCTTGAGATTTACCCCAAGCTCGAGTTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK059900             [  CAACATTCCTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCCTTGCGACAATATGGTGGATTTTGGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCTGAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGTACCACCTGGCTCAAAGCCCTCGCCTTTGCAACCCTGAACCGTTCGACTTACCCACCATCGGATGAACATC ACCCGCTCCTCGAACACAACCCCCATGACCTTG TTGGGTTTCTTGAGATTTACCCCAAGCTCGAGTTGTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGCCATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACATCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGAAGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCGGCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGGTGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGGCGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAATTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTACCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCAATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGGGTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCATCCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATCATTTC                                                                                             ]
[-] EMBL CF278657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGGTGACTGGAGCAATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGGGTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCATCCAACCATGGTGCTTTTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTCTTTGCAAAATCAACTGTACCCTCAAAAAAAAAAAAAAA]


>consensus_7409#0 GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCC TTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCT GAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGT ACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCG GATGAACATCACCCGTTCTTGGACACAACCCCCATGACCTTGTTGGGNTTCTTGAGATTT ACCCCAAGCTCGAGTTTTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGC CATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACA TCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGA AGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCG GCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGG TGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGG CGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAA TTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTA CCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCA ATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGG GTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCAT CCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTA CCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATC ATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTC TTTGCAAAATCAACTGTACCCTCAAAAAAAAAAAAAAA



consensusID : consensus_7409#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence
                              [GGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTNTTTTGGGAGNTTCTTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU097472             [GGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTNTTTTGGGAGNTTCTTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_7409#1 GGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTG CTTTTTCATTATCATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTN TTTTGGGAGNTTCTTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7409#0      GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCC 60
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      TTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCT 120
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      GAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGT 180
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      ACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCG 240
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      GATGAACATCACCCGTTCTTGGACACAACCCCCATGACCTTGTTGGGNTTCTTGAGATTT 300
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      ACCCCAAGCTCGAGTTTTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGC 360
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      CATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACA 420
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      TCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGA 480
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      AGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCG 540
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      GCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGG 600
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      TGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGG 660
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      CGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAA 720
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      TTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTA 780
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      CCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCA 840
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      ATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGG 900
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      GTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCAT 960
consensus_7409#1      ------------------------------------------------------------
                                                                                  

consensus_7409#0      CCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTA 1020
consensus_7409#1      -----------------------------------------------GGCTGGCTAATTA 13
                                                                     *************

consensus_7409#0      CCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATC 1080
consensus_7409#1      CCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTGCTTTTTCATTATC 73
                      ******************************** ******* *******************

consensus_7409#0      ATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTC 1140
consensus_7409#1      ATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTNTTTTGGGAGNTTC 133
                      ******************* ********** ******* ******* ********* ***

consensus_7409#0      TTTGCAAAATCAACTGTACCCTCA------AAAAAAAAAAAAAA---------------- 1178
consensus_7409#1      TTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 193
                      ***************** ******      **************                

consensus_7409#0      -------
consensus_7409#1      AAAAAAA 200
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)