These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1178 fasta sequence [GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCCTTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCTGAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGTACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCGGATGAACATC-ACCCG-TTCTTGGACACAACCCCCATGACCTTG-TTGGGNTTCTTGAGATTTACCCCAAGCTCGAGTTTTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGCCATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACATCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGAAGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCGGCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGGTGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGGCGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAATTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTACCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCAATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGGGTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCATCCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTCTTTGCAAAATCAACTGTACCCTCAAAAAAAAAAAAAAA] [+] EMBL OSS5085A [GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCCTTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCTGAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGTACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCGGATGAACATCAACCCG TTCTTGGACACAACCCCCATGACCTTGTTTGGGNTTCTTGAGATTTACCCCAAGCTCGAGTTTTA ] [+] EMBL AK059900 [ CAACATTCCTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCCTTGCGACAATATGGTGGATTTTGGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCTGAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGTACCACCTGGCTCAAAGCCCTCGCCTTTGCAACCCTGAACCGTTCGACTTACCCACCATCGGATGAACATC ACCCGCTCCTCGAACACAACCCCCATGACCTTG TTGGGTTTCTTGAGATTTACCCCAAGCTCGAGTTGTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGCCATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACATCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGAAGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCGGCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGGTGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGGCGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAATTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTACCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCAATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGGGTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCATCCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATCATTTC ] [-] EMBL CF278657 [ CGGTGACTGGAGCAATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGGGTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCATCCAACCATGGTGCTTTTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTCTTTGCAAAATCAACTGTACCCTCAAAAAAAAAAAAAAA] consensusID : consensus_7409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [GGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTNTTTTGGGAGNTTCTTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097472 [GGCTGGCTAATTACCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTGCTTTTTCATTATCATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTNTTTTGGGAGNTTCTTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7409#0 GCCAACATTACTGAGATAATGGAATCTCTTCCCGTAGAGACGAGGTTCACAGAGTTTCCC 60 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 TTGCGACAATATGGTGGATTTTNGTTATTGGAGGTCATGCTCAATGGCGTTGCTGCAGCT 120 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 GAAACTAGCTTTCAACCGAGACCATCCGACATCCTCCTTTCAAGCTTTCCTAAGTGTGGT 180 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 ACCACCTGGCTCAAAGGCCTCGNCTTTGCAACCCTGAACCGGTCGACTTACCCACCATCG 240 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 GATGAACATCACCCGTTCTTGGACACAACCCCCATGACCTTGTTGGGNTTCTTGAGATTT 300 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 ACCCCAAGCTCGAGTTTTACGAGTCACTCCCATCTCCACGGCTGCTCTCAACCCACCTGC 360 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 CATATTCGATGCTGCCTCATCGCATCAGGGAACAAGAAACGGGGTGTCGGCTAGTCTACA 420 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 TCTACCGGGACCCAAAGGATGCCATGGTCTCCATGTGGCACCAGAACAAGAAGGAGAAGA 480 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 AGAATAGGTTGACGTTCGAGGAGATGTTCGACATGTTCTGTGAAGGACGGTGTGTTGTCG 540 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 GCCCGCAGTGGTGCCATGCCGGTGAGTACTGGGATGAGAGCCAGGCGAGACCTGAGAAGG 600 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 TGCTTTTCCTCATGTATGAGGATCTTCTGCAAGATACTGTGGGCAACCTAAGGACGCTGG 660 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 CGGAGTTCATGGGCTGTGGGTTCTCTCGCCAGGAAGAAGATGACGGTATCGTGCAACAAA 720 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 TTGTAGAACTGTGCAGCTTGAACAACCTGAAGAACTTGAACGTGAACAAGAGTGGAACTA 780 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 CCCTTCTAGGGATCTCCAAAGATGGCTTCTTCAGGAAGGGAGGAACCGGTGACTGGAGCA 840 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 ATCACATGTCACCAGAGATGGCAGCGAGGCTGGACAAGATCGTTAAGGAGAGGCTGGAGG 900 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 GTTCTGGACATCCAATTATTTCCAGGATCAATGCGAAAGCAACAACTTCGATCGGTTCAT 960 consensus_7409#1 ------------------------------------------------------------ consensus_7409#0 CCAACCATGGTGCTTCTGAAGCCAAATACATTAAGGAGTAACAACTCGGCTGGCTAATTA 1020 consensus_7409#1 -----------------------------------------------GGCTGGCTAATTA 13 ************* consensus_7409#0 CCGTGGCTCATGGTGCTGTGGATTCTGTGAAGACCAGGATCTGATTGCTTTTTCATTATC 1080 consensus_7409#1 CCGTGGCTCATGGTGCTGTGGATTCTGTGAAGNCCAGGATNTGATTGCTTTTTCATTATC 73 ******************************** ******* ******************* consensus_7409#0 ATTTCAGTCCTTTGTATTCCTTGTGTTTCAAGTGTAATATGCCCTTCTTTTGGGAGCTTC 1140 consensus_7409#1 ATTTCAGTCCTTTGTATTCNTTGTGTTTCANGTGTAATNTGCCCTTNTTTTGGGAGNTTC 133 ******************* ********** ******* ******* ********* *** consensus_7409#0 TTTGCAAAATCAACTGTACCCTCA------AAAAAAAAAAAAAA---------------- 1178 consensus_7409#1 TTTGCAAAATCAACTGTNCCCTCAGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 193 ***************** ****** ************** consensus_7409#0 ------- consensus_7409#1 AAAAAAA 200 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||