Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7417 cluster # 7417       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7417#0 length = 1271 sequences # 4  
consensusID : consensus_7417#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1271
fasta sequence 
                              [TCCCGTCGCTCTCTCACCAGCAGCCATGGCCGCGGATCCCACCACCGGCGGCGGCGAGGCGGAGTCCTTCTTCCGCGCCGCGCCGCCGCTCCGCGACCAGGACCGCGTCGCCGGGGACCTCGCCGACTTCGTCGCCCGCCACTCCGGGAGCGGAGGAGGGGGGAGGCTCGCCGGGGTGGTCTGCGTCACCTCCGGCGGCACGACGGTGCCCCTGGAGCAGCGGTGCGTGCGCTACATCGACAACTTCAGCTCCGGCCAGCGAGGGGCCGCGTCCACCGAGTACTTTCTCAAAGCTGGCTACGCGGTCATCTTCATCTACCGCCGTGGGAGCAAGCAACCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTTGATTTATTCGAGCTTGGTGAAGAATCAGATATCCAAGTCCCAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATCGGAAGGCGATTGATGAAGGCCTATTGCTGAAACTTCCTTTCACCACTATCTTTGAGTACCTTCAGTTACTGCAAATGGTAGGTACGGCGATGAATTGCTTGGGACGCCAAGGAATGTTTTACCTTGCTGCGGCAGTTTCTGACTTTTATGTTCCATGGGAAAGCATGGCTAAACATAAAATCGAGTCAGCAAGTGGCCCTTTGAACATGCAACTCAATCAAGTTCCGAAGATGCTTTTCATTCTGAGAAAACAATGGTCTCCTTCAGCATTTTGTGTATCCTTCAAGCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGAAAGTATGGTATGAATGTCGTGGTCGCCAACGAGCTAGCGAACTACAAAGATGTAGTTGTGATGGTCACAAGCAATGGGAGGACAACCGTGCGAAGGCCCAGCAAGGAGGATGACGTCGAAGAACAGTTAATCGATCTCTTGGTAGAGATGCACTCTGAACACATCATGCAGCTCAATCAAGACCATCAGACGTGCACAAGCTGACATAACAATTATACTGAATGGAGTACGAGTATCAGAATTCTTGGCAACTACATCATCCAAAGTTGTTACAACTTACGAGCCACGAGCTGAACTATGAATATCATGACTTGTAAAAAAGAAAAAGAATAGCATATGCCCACAAATGGTGGTAAAGTATGCATGTACCACATTCAGGTGTCAATGTTACGCCTGGTGCTTCTGTAACTTACTACATGTTAATTCCCTGGGAAAGGGCC-TTGGGAGATAGGCATGATTTTTTTTTTCTAAGTTT]

[+] EMBL AK067868             [TCCCGTCGCTCTCTCACCAGCAGCCATGGCCGCGGATCCCACCACCGGCGGCGGCGAGGCGGAGTCCTTCTTCCGCGCCGCGCCGCCGCTCCGCGACCAGGACCGCGTCGCCGGGGACCTCGCCGACTTCGTCGCCCGCCACTCCGGGAGCGGAGGAGGGGGGAGGCTCGCCGGGGTGGTCTGCGTCACCTCCGGCGGCACGACGGTGCCCCTGGAGCAGCGGTGCGTGCGCTACATCGACAACTTCAGCTCCGGCCAGCGAGGGGCCGCGTCCACCGAGTACTTTCTCAAAGCTGGCTACGCGGTCATCTTCATCTACCGCCGTGGGAGCAAGCAACCTTACTGTAGGTTTCTTCCAGAGGATTCCTTTCTTGATTTATTCGAGCTTGGTGAAGAATCAGATATCCAAGTCCCAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATCGGAAGGCGATTGATGAAGGCCTATTGCTGAAACTTCCTTTCACCACTATCTTTGAGTACCTTCAGTTACTGCAAATGGTAGGTACGGCGATGAATTGCTTGGGACGCCAAGGAATGTTTTACCTTGCTGCGGCAGTTTCTGACTTTTATGTTCCATGGGAAAGCATGGCTAAACATAAAATCGAGTCAGCAAGTGGTCTTTTGAACATGCAACTCAATCAAGTTCCGAAGATGCTTTTCATTCTGAGAAAACAATGGGCTCCTTCAGCATTTTGTGTATCCTTCAAGCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGAAAGTATGGTATGAATGTCGTGGTCGCCAACGAGCTAGCGAACTACAAAGATGTAGTTGTGATGGTCACAAGCAATGGGAGGACAACCGTGCGAAGGCCCAGCAAGGAGGACGACGTCGAAGAACAGTTAATCGATCTCTTGGTAGAGATGCACTCCGAACACATCATGCAGCTCAATCA        AGACGTGCACAAGCTGACATAACAATTATACTGAATGGAATACGAGTATCAGAATTCTTGGCAACTACATCATCCAAAGTTGTTACAACTTACGAGCCACGAGCTGAACTATGAATATCATGACTTGTAAAAAAGAAAAAGAATAGCATATGCCCACAAATGGTGGTAAAGTATGTATGTACCACATTCAGGTGTCAATGTTACGCCTGGTGCTTCTGTAACTTACTACATGTTAATTCCCTGGGAAAGGGCC TTGGGAGATAGGCATGATTTTTTTTTTCTAAGTTT]
[+] EMBL CA765195             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 aaggggATCGAAAGGCGATTGATGAAGGCCTATTGCTGAAACTTCCTTTCACCACTATCTTTGAGTACCTTCAGTTACTGCAAATGGTAGGTACGGCGATGAATTGCTTGGGACGCCAAGGAATGTTTTACCTTGCTGCGGCAGTTTCTGACTTTTATGTTCCATGGGAAAGCATGGCTAAACATAAAATTGAGTCAGCAAGTAGCCCTTTGAACATGCAACTCAATCAAGTTCCGAAGATGCTTTTCATTCTGAGAAAACAATGGTCTCCTTCAGCATTTTGTGTATCCTTCAAGCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGAAAGTATGGTATGAATGTCGTGGTCGCCAACGAGCTAGCGAACTACAAAGATGTAGTTGTGATGGTCACAAGCAATGGGAGGACAACCGTGCGAAGGCCCAGCAAGGAGGATGACGTCGAAGAACAGTTAATCGATCTCTTGGTAGAGATGCACTCTGAACACATCATGCAGCTCAATCAAGACCATCAGACGTGCACAAGCTGACATAACAATTATACTGAATGGAGTACGAGTATCAGAATTCTTGGCAACTACATCATCCAAAGTTGNTACAACTTACGAGCCACGAGCTGAACTATGACTATCATGACTTGTAAAAAAGAAAAAGAATAGCATATGCCCACAAATGGTGGTAAAGTATGCATGTACCACATTCAGGTGTCAATGGTACGCCTGGTGCTTCTGNAACTTACTACATGGTAAATNCCTGGGAAAGGGCC TTGGGAG                            ]
[+] EMBL CB621576             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGCCATTGATGAAGGCCTATTGCTGAAACTTCCTTTCACCACTATCTTTGAGTACCTTCAGTTACTGCAAATGGTAGGTACGGCGATGAATTGCTTGGGACGCCAAGGAATGTTTTACCTTGCTGCGGCAGTTTCTGACTTTTATGTTCCATGGGAAAGCATGGCTAAACATAAAATCGAGTCAGCAAGTGGCCCTTTGAACATGCAACTCAATCAAGTTCCGAAGATGCTTTTCATTCTGAGAAAACAATGGTCTCCTTCAGCATTTTGTGTATCCTTCAAGCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGCAGAGGCAGCTCTGAGAAAGTATGGTATGAATGTCGTGGTCGCCAACGAGCTAGCGAACTACAAAGATGTAGTTGTGATGGTCACAAGCAATGGGAGGACAACCGTGCGAAGGCCCAGCAAGGAGGATGACGTCGAAGAACAGTTAATCGATCTCTTGGTAGAGATGCACTCTGAACACATCATGCAGCTCAATCAAGACCATCAGACGTGCACAAGCTGACATAACAATTATACTGAATGGAGTACGAGTATCAGAATTCTTGGCAACTACATCATCCAAAGTTGTTACAACTTACGAGCCACGAGCTGAACTATGAATATCATGACTTGTAAAAAAGAAAACGAATAGCATATGCCCACAAATGGTGGTAAAGTATGCATGTACCACATTCAAGTGTCAATGTTACGCCTGGTGCTTCTGTAACTTACTACATGTTAATTCCCTGGGAAAGGGCC TTGGGAGATAGGCATGATTTTTTTT          ]
[-] EMBL CB621577             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGAAGGCCTATTGCTGAAACTTCCTTTCACCACTATCTTTGAGTACCTTCAGTTACTGCAAATGGTAGGTACGGCGATGAATTGCTTGGGACGCCAAGGAATGTTTTACCTTGCTGCGGCAGTTTCTGACTTTTATGTTCCATGGGAAAGCATGGCTAAACATAAAATCGAGTCAGCAAGTGGCCCTTTGAACATGCAACTCAATCAAGTTCCGAAGATGCTTTTCATTCTGAGAAAACAATGGTCTCCTTCAGCATTTTGTGTATCCTTCAAGCTTGAGACGGACCCAGATATCCTTTTGCAGAAGGCAGAGGCAGCTCTGAGAAAGTATGGTATGAATGTCGTGGTCGCCAACGAGCTAGCGAACTACAAAGATGTAGTTGTGATGGTCACAAGCAATGGGAGGACACCCGTGCGAAGGCCCAGCAAGGAGGATGACGTCGAAGAACAGTTAATCGATCTCTTGGTAGAGATGCACTTTGAACACATCATGCAGCTCAATCAAGACCATCAGACGTGCACAAGCTGACATAACAATTATACTGAATGGAGTACGAGTATCAGAATTCTTGGCAACTACATCATCCAAAGTTGTTACAACTTACGAGCCACGAGCTGAACTATGAATATCATGACTTGTAAAAAAGAAAACGAATAGCATATGCCCACAAATGGTGGTAAAGTATGCATGTACCACATTCAGGTGTCAATGTTACGCCTGGTGCTTCTGTAACTTACTACATGTTAATTCCCTGGGAAAGTGCCAAGGGGAGATAGGCATGATTTTTT            ]




>consensus_7417#0
TCCCGTCGCTCTCTCACCAGCAGCCATGGCCGCGGATCCCACCACCGGCGGCGGCGAGGC
GGAGTCCTTCTTCCGCGCCGCGCCGCCGCTCCGCGACCAGGACCGCGTCGCCGGGGACCT
CGCCGACTTCGTCGCCCGCCACTCCGGGAGCGGAGGAGGGGGGAGGCTCGCCGGGGTGGT
CTGCGTCACCTCCGGCGGCACGACGGTGCCCCTGGAGCAGCGGTGCGTGCGCTACATCGA
CAACTTCAGCTCCGGCCAGCGAGGGGCCGCGTCCACCGAGTACTTTCTCAAAGCTGGCTA
CGCGGTCATCTTCATCTACCGCCGTGGGAGCAAGCAACCTTACTGTAGGTTTCTTCCAGA
GGATTCCTTTCTTGATTTATTCGAGCTTGGTGAAGAATCAGATATCCAAGTCCCAGAATC
TCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATCGGAAGGCGATTGATGAAGGCCT
ATTGCTGAAACTTCCTTTCACCACTATCTTTGAGTACCTTCAGTTACTGCAAATGGTAGG
TACGGCGATGAATTGCTTGGGACGCCAAGGAATGTTTTACCTTGCTGCGGCAGTTTCTGA
CTTTTATGTTCCATGGGAAAGCATGGCTAAACATAAAATCGAGTCAGCAAGTGGCCCTTT
GAACATGCAACTCAATCAAGTTCCGAAGATGCTTTTCATTCTGAGAAAACAATGGTCTCC
TTCAGCATTTTGTGTATCCTTCAAGCTTGAGACGGACCCAGATATCCTTCTGCAGAAGGC
AGAGGCAGCTCTGAGAAAGTATGGTATGAATGTCGTGGTCGCCAACGAGCTAGCGAACTA
CAAAGATGTAGTTGTGATGGTCACAAGCAATGGGAGGACAACCGTGCGAAGGCCCAGCAA
GGAGGATGACGTCGAAGAACAGTTAATCGATCTCTTGGTAGAGATGCACTCTGAACACAT
CATGCAGCTCAATCAAGACCATCAGACGTGCACAAGCTGACATAACAATTATACTGAATG
GAGTACGAGTATCAGAATTCTTGGCAACTACATCATCCAAAGTTGTTACAACTTACGAGC
CACGAGCTGAACTATGAATATCATGACTTGTAAAAAAGAAAAAGAATAGCATATGCCCAC
AAATGGTGGTAAAGTATGCATGTACCACATTCAGGTGTCAATGTTACGCCTGGTGCTTCT
GTAACTTACTACATGTTAATTCCCTGGGAAAGGGCCTTGGGAGATAGGCATGATTTTTTT
TTTCTAAGTTT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)