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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1502 fasta sequence
[AGGCTGACGCGGGCTCCGCCCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGCCCCGACGACTACCCGCGCCTCCACGGCTCCCGCCCGCTCTTCTCCCTCGCCGCCTCCCGCCTCGCGCGCCTCCGCCGCCCGGACCTCGCCGCCTCGCTCCTCCGCGCCCTCCTCGACTCCGCCCCGGCGTCCCCGGGCCTCCTCGCCCGCGCCATCTCCCTCTTCCCGGGCCCCGACGACGCCCTCCGCGCGTTCTCCGACTCCGCGCCCGCCGCCCGC-TCCGACGTCTCCCTCTCGGCGCTCCTCTCCGCGCTCTTCCGCGCCGGCCGCGTCGACGACGTCAAGTCCACCCTCGCCTCCGCGGAGACCTC-CTTCGGCGTCGCCCCCGGACGCGCCTCCCACAACGT-GCTCCTCCACGCTCTGGTGAAGAACTCCGAGCTCGCCGCCGCCCGCAAGCTGCTCGGCGAAATGGCCAAGAAGCTAAAGCACCGCCCGGCCCCTGACATCGTGTCGTACAACACCGTGCTCGCTGGCTATTCTGCGCAGGGCGATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCAGCGCAAAGAAGCTGGAGCCGAATGTTGTGACTTACAACTGCCGGATACAGTGGTTTGCCAAGAAGGGTGAAACCTTCAAGGGGGAGGAGCTGCTTGATGCCATGGAGTCAAAGGATGTGGCGCCGAATTACCTTACGTACAATGCGCTTGTGCAGGGGTACTGCAAGGAGGGGAATGTTGGGTCAGCCATGCGTGTGTTCAAGAGGATGAAAGTGATGAAGAGGAGGGAGGGTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGTGCTGTTCAGGAGCTTGGTGGAGAAAGAGAGGCTTGATGATGCTCTATGGATTTGTAAGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGTGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGTGGCTTGGGAGAAGATTGCTGGTGAATTGTCCCTTGAAGGAACACCTAGTTCAAATCCATGATTTGCTTGAGGAATGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGATGAAGAACTTCCAGATGGAATCTAGTGTTTTCGTTGCGTTATCATGGGGCTGTTTTTTCGAGTTCCAATGTTTAGATCAGAATGTAACAGATGAATCTATAAAGTGGAATTTAAGAAGTGGTATTTTG]
[+] EMBL AK119488 [AGGCTGACGCGGGCTCCGCCCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGCCCCGACGACTACCCGCGCCTCCACGGCTCCCGCCCGCTCTTCTCCCTCGCCGCCTCCCGCCTCGCGCGCCTCCGCCGCCCGGACCTCGCCGCCTCGCTCCTCCGCGCCCTCCTCGACTCCGCCCCGGCGTCCCCGGGCCTCCTCGCCCGCGCCATCTCCCTCTTCCCGGGCCCCGACGACGCCCTCCGCGCGTTCTCCGACTCCGCGCCCGCCGCCCGC TCCGACGTCTCCCTCTCGGCGCTCCTCTCCGCGCTCTTCCGCGCCGGCCGCGTCGACGACGTCAAGTCCACCCTCGCCTCCGCGGAGACCTC CTTCGGCGTCGCCCCCGGACGCGCCTCCCACAACGT GCTCCTCCACGCTCTGGTGAAGAACTCCGAGCTCGCCGCCGCCCGCAAGCTGCTCGGCGAAATGGCCAAGAAGCTAAAGCACCGCCCGGCCCCTGACATCGTGTCGTACAACACCGTGCTCGCTGGCTATTCTGCGCAGGGCGATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCAGCGCAAAGAAGCTGGAGCCGAATGTTGTGACTTACAACTGCCGGATACAGTGGTTTGCCAAGAAGGGTGAAACCTTCAAGGGGGAGGAGCTGCTTGATGCCATGGAGTCAAAGGATGTGGCGCCGAATTACCTTACGTACAATGCGCTTGTGCAGGGGTACTGCAAGGAGGGGAATGTTGGGTCAGCCATGCGTGTGTTCAAGAGGATGAAAGTGATGAAGAGGAGGGAGGGTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGTGCTGTTCAGGAGCTTGGTGGAGAAAGAGAGGCTTGATGATGCTCTATGGATTTGTAAGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGTGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGTGGCTTGGGAGAAGATTGCTGGTGAATTGTCCCTTGAAGGAACACCTAGTTCAAATCCATGATTTGCTTGAGGAATGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGATGAAGAACTTCCAGATGGAATCTAGTGTTTTCGTTGCGTTATCATGGGGCTGTTTTTTCGAGTTCCAATGTTTAGATCAGAATGTAACAGATGAATCTATAAAGTGGAATTTAAGAAGTGGTATTTTG]
[+] EMBL CB680886 [ TCCCCGGGGCTCCTCGCCCGCGCCATCTCCCTCTTCCCGGGCCCCGACGACGCCCTCCGCGCGGGCTCCGACTCCGCGCCCGCCGCCCGCGTCCGACGTCTCCCTCTCGGCGCTCCTCTCCGCGCTCTTCCGCGCCGGCCGCGTCGACGACGGCAAGTCCACCCTCGGCTCCGCGGAGACCTCACTTCGGCGTCGCCCCCGGACGCGCCTCCCACAACGTCGCTCCTCCACGCTCTGGTGAAGAACTCCGAGCTCGCCGCCGCCCGCGAGCTGCTCGGCGAAATGGCCAAGAAGCTAAAGCACCGCCCGGCCCCTGACATCG GGGGGGCAACACCGTGCTCGCTGGCTATTCTGCGCAGGGCGATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCCGCGCAAAGAAGCTGGAGCCGAGTGTTGGGACTTACAACTGCCGGATACAGTGGCTTGCCAAGAAGGGTGAAACCTTCAAGGGGGA ]
[-] EMBL CB680887 [ ATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCAGCGCAAAGAAGCTGGAGCCGAATGTTGTGACTTACAACTGCCGGATACAGTGGTTTGCCAAGAAGGGTGAAACCTTCAAGGGGGAGGAGCTGCTTGATGCCATGGAGTCAAAGGATGTGGCGCCGAATTACCTTACGTACAATGCGCTTGTGCAGGGGTACTGCAAGGAGGGGAATGTTGGGTCAGCCATGCGTGTGTTCAAGAGGATGAAAGTGATGAAGAGGAGGGAGGGTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGTGCTGTTCAGGAGCTTGGTGGAGAAAGAGAGGCTTGATGATGCTCTATGGATTTGTAAGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGTGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGTGGCTTGGGAGAAGATTGCTGGTGAATTGTCCCTTGAAGGAACACCTAGTTCAAATCCATGATTTGCTTGAGGAATGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGATGAAGAACTTCCAGATGGAATCTAGTGTTTTCGTTGCGTTATCATGGGGCTGTTTTTTCGAGTTCCAATGTTTAGATCAGAATGTAACAGATGAATCTATAAAGTGGAATTTA ]
consensusID : consensus_7424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[GAGGACNAGACAGGGGACNGAAGTGATGAACAGGAGGNAGGCTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGCGCTGTTCAGGAGCTTGGTGGAGAANGAGAGGCTTGATGATGCTCTATGGATTTGTNNGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGNGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGNGGCTTGGGAGAAGANTGCTGNTGAATTGTCCCTTGAANGAACACCTAGTTCAAATCCATGATCTGCTTGNCGAANGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGNTGAAGAACTTCCAGATGGAANCTAGCGTTNTCGTTGCGTTATCATGNGGCTGNTTTTTCGAGNTCCAATGTTTAGNTCAGAATGTNACANATGAATCTATNANAGCGAAANT]
[+] EMBL CA764838 [GAGGACNAGACAGGGGACNGAAGTGATGAACAGGAGGNAGGCTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGCGCTGTTCAGGAGCTTGGTGGAGAANGAGAGGCTTGATGATGCTCTATGGATTTGTNNGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCAGTCAAGGGTTTGGTTGAGGGATTGGNGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGNGGCTTGGGAGAAGANTGCTGNTGAATTGTCCCTTGAANGAACACCTAGTTCAAATCCATGATCTGCTTGNCGAANGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGNTGAAGAACTTCCAGATGGAANCTAGCGTTNTCGTTGCGTTATCATGNGGCTGNTTTTTCGAGNTCCAATGTTTAGNTCAGAATGTNACANATGAATCTATNANAGCGAAANT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7424#0 AGGCTGACGCGGGCTCCGCCCGCTGATCCGATGATTCATGATAACTCGACGGATCGCACG 60
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 GCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGAT 120
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 AGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAG 180
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 CCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGC 240
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 CCCGACGACTACCCGCGCCTCCACGGCTCCCGCCCGCTCTTCTCCCTCGCCGCCTCCCGC 300
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 CTCGCGCGCCTCCGCCGCCCGGACCTCGCCGCCTCGCTCCTCCGCGCCCTCCTCGACTCC 360
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 GCCCCGGCGTCCCCGGGCCTCCTCGCCCGCGCCATCTCCCTCTTCCCGGGCCCCGACGAC 420
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 GCCCTCCGCGCGTTCTCCGACTCCGCGCCCGCCGCCCGCTCCGACGTCTCCCTCTCGGCG 480
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 CTCCTCTCCGCGCTCTTCCGCGCCGGCCGCGTCGACGACGTCAAGTCCACCCTCGCCTCC 540
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 GCGGAGACCTCCTTCGGCGTCGCCCCCGGACGCGCCTCCCACAACGTGCTCCTCCACGCT 600
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 CTGGTGAAGAACTCCGAGCTCGCCGCCGCCCGCAAGCTGCTCGGCGAAATGGCCAAGAAG 660
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 CTAAAGCACCGCCCGGCCCCTGACATCGTGTCGTACAACACCGTGCTCGCTGGCTATTCT 720
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 GCGCAGGGCGATGAGGAGGGGTTTGAGAAGCTACTGAAGGAGATCAGCGCAAAGAAGCTG 780
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 GAGCCGAATGTTGTGACTTACAACTGCCGGATACAGTGGTTTGCCAAGAAGGGTGAAACC 840
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 TTCAAGGGGGAGGAGCTGCTTGATGCCATGGAGTCAAAGGATGTGGCGCCGAATTACCTT 900
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 ACGTACAATGCGCTTGTGCAGGGGTACTGCAAGGAGGGGAATGTTGGGTCAGCCATGCGT 960
consensus_7424#1 --------------------------------------------------------GAGG 4
* *
consensus_7424#0 GTGTTCAAGAGGATGAAAGTGATGAAGAGGAGGGAGGGTAGGAGTGACTTGGGTGTGTCA 1020
consensus_7424#1 ACNAGACAGGGGACNGAAGTGATGAACAGGAGGNAGGCTAGGAGTGACTTGGGTGTGTCA 64
** *** ********** ****** *** **********************
consensus_7424#0 GCGCATTCGCAAACATATGTGGTGCTGTTCAGGAGCTTGGTGGAGAAAGAGAGGCTTGAT 1080
consensus_7424#1 GCGCATTCGCAAACATATGTGGCGCTGTTCAGGAGCTTGGTGGAGAANGAGAGGCTTGAT 124
********************** ************************ ************
consensus_7424#0 GATGCTCTATGGATTTGTAAGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCA 1140
consensus_7424#1 GATGCTCTATGGATTTGTNNGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTGAGGCA 184
****************** ****************************************
consensus_7424#0 GTCAAGGGTTTGGTTGAGGGATTGGTGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTT 1200
consensus_7424#1 GTCAAGGGTTTGGTTGAGGGATTGGNGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTT 244
************************* **********************************
consensus_7424#0 GTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGTGGCTTGGGAGAAGATTGCT 1260
consensus_7424#1 GTCGCCAAGATGAACCTTCTTGTGAAAGGTGATGCTAAAGNGGCTTGGGAGAAGANTGCT 304
**************************************** ************** ****
consensus_7424#0 GGTGAATTGTCCCTTGAAGGAACACCTAGTTCAAATCCATGATTTGCTTGAGGAATGTAT 1320
consensus_7424#1 GNTGAATTGTCCCTTGAANGAACACCTAGTTCAAATCCATGATCTGCTTGNCGAANGTAT 364
* **************** ************************ ****** *** ****
consensus_7424#0 GTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGATGAAGA 1380
consensus_7424#1 GTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATAATGCTGNTGAAGA 424
***************************************************** ******
consensus_7424#0 ACTTCCAGATGGAATCTAGTGTTTTCGTTGCGTTATCATGGGGCTGTTTTTTCGAGTTCC 1440
consensus_7424#1 ACTTCCAGATGGAANCTAGCGTTNTCGTTGCGTTATCATGNGGCTGNTTTTTCGAGNTCC 484
************** **** *** **************** ***** ********* ***
consensus_7424#0 AATGTTTAGATCAGAATGTAACAGATGAATCTATAAAGTGGAATTTAAGAAGTGGTATTT 1500
consensus_7424#1 AATGTTTAGNTCAGAATGTNACANATGAATCTATNANAGCGAAANT-------------- 530
********* ********* *** ********** * *** *
consensus_7424#0 TG 1502
consensus_7424#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||