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Oryza sativa
cluster # 7425 cluster # 7425       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7425#0 length = 1471 sequences # 4  

consensusID : consensus_7425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1471
fasta sequence
                              [AATCCCCACCGCTCACTCCGAAGTCCAAACCCTAGGTTACTCATGGTGCAAGAAGAACCTAACATCACCACCCCCGACGCCGGCCACCCCTCCCCGCCATCCCGCCTCCTCTCGAAGCACCGCCCTCGCCGCGGCGCTGCTGCTCCCCGCGCGTCCCTGCATCCTCCTGCTCCCCCGCACAGCCAGCCCAACCTCAACCTCTGCCACTGCTGCGGTGTGCGCTTCCCGCCGGCGCCGCCGGGGGCCAAGCGCCGACCGGTCCGCCCCCTCCGGTCCCTCTGGCGCGTCGTCCTCCTCTGCACGGAATGCCTCTCCCTCGTCCGCTCCGCTGCAGTTTGCTCCTACTGCCTCTCCCTCGACAACCTCCCGCCCGAGGACTCCTCTGTCACTTGCCGATGCTGCAACCGCTGCGTCCACCCCTACTGTATCGCAGGTGAGCATCGCGCCGCCCTAATCCAGCCCATCGATGTGGAGAATTTCATCTGCGTCGATTGCTGCCCGACCGTCAAGCCGGGTGGAAAAAATGGGGGCGCCTCTTCCGTGCATATGCTGCAGGCAGTCGCCAGGGAGCCGAGGAAGGGGGATATCGTGGCTGAATCAAAAGAGAATGCTGTGAGGAAGGCTATGGAAATGAAGCTGGCTTTCAAGCGTGCGAAGGAAGCGTTGGTCTCTGCTGCTGGTGGTAGGGGATCTCAGAGGACGGTTGGTGGTAAACCAGATTTGCCGGATGAAGAGTTGGCGTTGCAGCTACATCTGGCGATGAATGGGTCTCAGAGGTTTTCGCGTGCCGGGAACACATCTGGTGGTGACTCAGCCGAGCAGTGCAAGGGTCACAAAAGTGTGATTGGTGGGAAGAATTTTTATGGAGATCAGGAACTTTGTGTTACCAATATGATGGATCAGCTTGATGATGATGAAGCTGGAGTAGAACCACTGTGTCGGATCAGGAGGCCCTCTAGGCGGCGATTGGATCCCTCAGTCACTATTGTTCTTGCGCTAGAGTATGTGGATGGTAAACATGTCAAGGAGAGTATGAAAGGTAAAAGGAAAGGTCATCTTGTGACTAAGAAGCAGAATGACTTGGTGGATCGATATAAGAGAAAGTATAGCAAGTGGAATTCAAAGAAGCAGACAAAGAATGAAAACCCTGAATTCAAAGACATCTCTGGTGGAAAAGATAAGGATGATGAGTGATGGTGGTAATTACATAGTTCGCATGAAATATAACTTCTCTGGAGGTATGCTAAAACTTTAGCAGAATTTAGTTCTTTCTGCTTTTATTGATTGTATCCTGTTCCCTTTTCCATTTGTTTTTTAGTTTTTACTCTCCCATTCTTCTGTTGTTTAAACTACAGGAAAAAAATTATGTGCTATTGCTTAAATTTGTATGCTTCCAAATGCCGTTGTTATGATGGTCCTGTGGTGGATGCGAACATGAATTTTAGTTTGCAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK064100             [AATCCCCACCGCTCACTCCGAAGTCCAAACCCTAGGTTACTCATGGTGCAAGAAGAACCTAACATCACCACCCCCGACGCCGGCCACCCCTCCCCGCCATCCCGCCTCCTCTCGAAGCACCGCCCTCGCCGCGGCGCTGCTGCTCCCCGCGCGTCCCTGCATCCTCCTGCTCCCCCGCACAGCCAGCCCAACCTCAACCTCTGCCACTGCTGCGGTGTGCGCTTCCCGCCGGCGCCGCCGGGGGCCAAGCGCCGACCGGTCCGCCCCCTCCGGTCCCTCTGGCGCGTCGTCCTCCTCTGCACGGAATGCCTCTCCCTCGTCCGCTCCGCTGCAGTTTGCTCCTACTGCCTCTCCCTCGACAACCTCCCGCCCGAGGACTCCTCTGTCACTTGCCGATGCTGCAACCGCTGCGTCCACCCCTACTGTATCGCAGGTGAGCATCGCGCCGCCCTAATCCAGCCCATCGATGTGGAGAATTTCATCTGCGTCGATTGCTGCCCGACCGTCAAGCCGGGTGGAAAAAATGGGGGCGCCTCTTCCGTGCATATGCTGCAGGCAGTCGCCAGGGAGCCGAGGAAGGGGGATATCGTGGCTGAATCAAAAGAGAATGCTGTGAGGAAGGCTATGGAAATGAAGCTGGCTTTCAAGCGTGCGAAGGAAGCGTTGGTCTCTGCTGCTGGTGGTAGGGGATCTCAGAGGACGGTTGGTGGTAAACCAGATTTGCCGGATGAAGAGTTGGCGTTGCAGCTACATCTGGCGATGAATGGGTCTCAGAGGTTTTCGCGTGCCGGGAACACATCTGGTGGTGACTCAGCCGAGCAGTGCAAGGGTCACAAAAGTGTGATTGGTGGGAAGAATTTTTATGGAGATCAGGAACTTTGTGTTACCAATATGATGGATCAGCTTGATGATGATGAAGCTGGAGTAGAACCACTGTGTCGGATCAGGAGGCCCTCTAGGCGGCGATTGGATCCCTCAGTCACTATTGTTCTTGCGCTAGAGTATGTGGATGGTAAACATGTCAAGGAGAGTATGAAAGGTAAAAGGAAAGGTCATCTTGTGACTAAGAAGCAGAATGACTTGGTGGATCGATATAAGAGAAAGTATAGCAAGTGGAATTCAAAGAAGCAGACAAAGAATGAAAACCCTGAATTCAAAGACATCTCTGGTGGAAAAGATAAGGATGATGAGTGATGGTGGTAATTACATAGTTCGCATGAAATATAACTTCTCTGGAGGTATGCTAAAACTTTAGCAGAATTTAGTTCTTTCTGCTTTTATTGATTGTATCCTGTTCCCTTTTCCATTTGTTTTTTAGTTTTTACTCTCCCATTCTTCTGTTGTTTAAACTACAGGAAAAAA                                                                                                             ]
[+] EMBL AU069489             [                                                             ACATCACCACCCCCGACGCCGGCCACCCCTCCCCGCCATCCCGCCTCCTCTCGAAGCACCGCCCTCGCCGCGGCGCTGCTGCTCCCCGCGCGTCCCTGCATCCTCCTGCTCCCCCGCACAGCCAGCCCAACCTCAACCTCTGCCACTGCTGCGGTGTGCGCTTCCCGCCGGCGCCGCCGGGGGCCAAGCGCCGACCGGTCCGCCCCCTCCGGTCCCTCTGGCGCGTCGTCCTCCTCTGCACGGAATGCCTCTCCCTCGTCCGCTCCGCTGCAGTTTGCTCCTACTGCCTCTCCCTCGACAACCTCCCGCCCGAGGACTCCTCTGTCACTTGCCGATGCTGCAACCGCTGCGTCCACCCCTACTGTATCGCAGGTGAGCATCGCGCCG CCTAATCCAGCCCATCGATGTGGAGAATTTCATCTGCGTCGATTGCTGCCCGACCGTCAAGCCGGGTGGAAAAAATGGGGGCGCCTCTTCCGTGCATATGCTG AAGCAGTCGCCAGGGAGCCGAGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA761886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAAGTGTGATTGGTGGGAAGAATTTTTATGGAGATCAGGAACTTTGTGTTACCAATATGATGGATCAACTTGATGATGATGAGGCTGGAGTAGAACCACTGTGTCGGATCAGGAGGCCTTCTAGGCGGCGATTGGATCCCTCAGTCACTATTGTTCTTGCGCTAGAGTATGTGGATGGTAAACATGTCAAGGAGAGTATGAAAGGTAAAAGGAAAGGTCATCTTGTGACTAAGAAGCAGAATGACTTGGTGGATCGATATAAGAGAAAGTATAGCAAGAGGAATTCAAAGAAGCAGACAAAGAATGAAAACCCTGAATTCAAAGACATCTTTGGTGGAAAAGATAAGGATGATGAGTAATGGTGGTAATTACATAGTTCGCATGAAATATAACTTCTCTGGAGGTATGCTAAAACTTTAGCAGAATTTAGTTCTTTCTGCTTTTATTGATTGTATCCTGTTCCCTTTTCCATTTGTTTTTTAGTTTTTACTCTCCCATTTTTCTGTTGTTTAAACTACAGGAAAAAAATTATGTGCTATTGCTTAAATTTGTATGCTTCCAAATGCCGTTGTTATGATGGTCCTGTGGTGGATGCGAACATGAATTTTAGTTTGCAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL D42340               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGTGCAAAAGATAAGGATGATGAGTGATGGTGGTAATTACATAGTTCGCATGAAATATAACTTCTCTGGAGGTATGCTAAAGCACTAGCAGCATTTAGCTCTTTCTGCTTTTATTGATGGTATCCTGTTCCCTTTTCCATTTGTTTTTTAGTTTTTACTCTCCCATTCTTCTGTTGTTTAAACTACAGGATTAAAATTATGTGCTA                                                                                                  ]


>consensus_7425#0 AATCCCCACCGCTCACTCCGAAGTCCAAACCCTAGGTTACTCATGGTGCAAGAAGAACCT AACATCACCACCCCCGACGCCGGCCACCCCTCCCCGCCATCCCGCCTCCTCTCGAAGCAC CGCCCTCGCCGCGGCGCTGCTGCTCCCCGCGCGTCCCTGCATCCTCCTGCTCCCCCGCAC AGCCAGCCCAACCTCAACCTCTGCCACTGCTGCGGTGTGCGCTTCCCGCCGGCGCCGCCG GGGGCCAAGCGCCGACCGGTCCGCCCCCTCCGGTCCCTCTGGCGCGTCGTCCTCCTCTGC ACGGAATGCCTCTCCCTCGTCCGCTCCGCTGCAGTTTGCTCCTACTGCCTCTCCCTCGAC AACCTCCCGCCCGAGGACTCCTCTGTCACTTGCCGATGCTGCAACCGCTGCGTCCACCCC TACTGTATCGCAGGTGAGCATCGCGCCGCCCTAATCCAGCCCATCGATGTGGAGAATTTC ATCTGCGTCGATTGCTGCCCGACCGTCAAGCCGGGTGGAAAAAATGGGGGCGCCTCTTCC GTGCATATGCTGCAGGCAGTCGCCAGGGAGCCGAGGAAGGGGGATATCGTGGCTGAATCA AAAGAGAATGCTGTGAGGAAGGCTATGGAAATGAAGCTGGCTTTCAAGCGTGCGAAGGAA GCGTTGGTCTCTGCTGCTGGTGGTAGGGGATCTCAGAGGACGGTTGGTGGTAAACCAGAT TTGCCGGATGAAGAGTTGGCGTTGCAGCTACATCTGGCGATGAATGGGTCTCAGAGGTTT TCGCGTGCCGGGAACACATCTGGTGGTGACTCAGCCGAGCAGTGCAAGGGTCACAAAAGT GTGATTGGTGGGAAGAATTTTTATGGAGATCAGGAACTTTGTGTTACCAATATGATGGAT CAGCTTGATGATGATGAAGCTGGAGTAGAACCACTGTGTCGGATCAGGAGGCCCTCTAGG CGGCGATTGGATCCCTCAGTCACTATTGTTCTTGCGCTAGAGTATGTGGATGGTAAACAT GTCAAGGAGAGTATGAAAGGTAAAAGGAAAGGTCATCTTGTGACTAAGAAGCAGAATGAC TTGGTGGATCGATATAAGAGAAAGTATAGCAAGTGGAATTCAAAGAAGCAGACAAAGAAT GAAAACCCTGAATTCAAAGACATCTCTGGTGGAAAAGATAAGGATGATGAGTGATGGTGG TAATTACATAGTTCGCATGAAATATAACTTCTCTGGAGGTATGCTAAAACTTTAGCAGAA TTTAGTTCTTTCTGCTTTTATTGATTGTATCCTGTTCCCTTTTCCATTTGTTTTTTAGTT TTTACTCTCCCATTCTTCTGTTGTTTAAACTACAGGAAAAAAATTATGTGCTATTGCTTA AATTTGTATGCTTCCAAATGCCGTTGTTATGATGGTCCTGTGGTGGATGCGAACATGAAT TTTAGTTTGCAAAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)