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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTCCAAAACTTTTCCCACATGCCATATATTTTTGGGTTAACATTTACAACTACAAAGAAATAGAATTGTAGCTCAACTGAAGTTACCAAAAATCCCCGCAAGAGCATGATCCTTCTCTGAAATGATAAAATCGATTTGCATCCCTAACAATTATGCACCTCCCATAAATCTTGCTTAAAAGTTTAACGGCATTATAACAATCTCCACAAACCCGGAGGTTCTTTGTTATCCTAATAGGCGTGCCTGGGGCAGTGCTTATCAATCCAAAGGCAATTGCAAGCTTCTCGCTGTGAAAAGCTAGGGAGCTCTCCTTCACATCCTCATCATCAATATCTAGTACCACATGTGAAGTATCTGGAACATATCCTGCAACTTTCAATTGCTGACACATTTCACTTAGCATCTCGAATATGGCCTCCTTGCTTGAAGGGC-TTTTATCCCCAGATATGAACTCATGAATTACACCATCAATTTCTATTGAGCTGCTTCCAGGTACCTTCTGCACACCACGATCAAGCATGAGCTTCCTCACCTTATGCACTCCTGTCCAGTTTCCATCTAGGGCATATATGTTGGATAAGCACAAATACCCGGGCGGGATCATTTGGGTGCAGCCCTCAATAAGCATAAGGGCCTGCTTTTCCTTCCACGGTCAAAGTTCCCT]
[+] EMBL CA762013 [TTTTTTTTTTTTTTTTTTTTTTTCCAAAACTTTTCCCACATGCCATATATTTTTGGGTTAACATTTACAACTACAAAGAAATAGAATTGTAGCTCAACTGAAGTTACCAAAAATCCCCGCAAGAGCATGATCCTTCTCTGAAATGATAAAATCGATTTGCATCCCTAACAATTATGCACCTCCCATAAATCTTGCTTAAAAGTTTAACGGCATTATAACAATCTCCACAAACCCGGAGGTTCTTTGTTATCCTAATAGGCGTGCCTGGGGCAGTGCTTATCAATCCAAAGGCAATTGCAAGCTTCTCGCTGTGAAAAGCTAGGGAGCTCTCCTTCACATCCTCATCATCAATATCTAGTACCACATGTGAAGTATCTGGAACATATCCTGCAACTTTCAATTGCTGACACATTTCACTTAGCATCTCGAATATGGCCTCCTTGCTTGAAGGGC TTTTATCCCCAGATATGAACTCATGAATTACACCATCAATTTCTATTGAGCTGCTTCCAGGTACCTTCTGCACACCACGATCAAGCATGAGCTTCCTCACCTTATGCACTCCTGTCCAGTTTCCATCTAGGGCATATATGTTGGATAAGCACAAATACCCGGGCGGGATCATTTGGGTGCAGCCCTCAATAAGCATAAGGGCCTGCTTTTCCTTCCACGGTCAAAGTTCCCT]
[-] EMBL BI800036 [ TTTTTTTTTCCAAAACTTTTCCCACATGCCATATA TTTTGTGTTAACATTTACAACTACAAAGAAATAGAATTGTAGCTCAACTGAAGTTACCAGAAATCCCCGCAAGAGCATGATCCTTCTCTGAAATGATGAAATCGATTTGCATCCCTAACAATTATGCACCTCCCATAAATCTTGCTTAGAAGTTTAACGGGATTATGACAATCTCCACAAACCCGGAGGTTCTTTGCTATCCTAATAGGCGTGCCTGGTGCAGTGCTTATCAATCCAAAGGCAATTGCAAGCTTCTCGCTGTGAAGAGCTAGTGAGCTCTCCTTCACATCCTCATCATCAATATCTAGTAGCACATGTGAAGTATCTGGAACATATCCTGCAACTTTCAA TGCTGACACATTTCACTTAGCATCTCGTATATGTCCTCCTTGCTTGAATGGCGTTTTATCCCCAGATATGAACTCATGAATTACACCATCAATTTCTATTGAGCTG TTCCAGGTACCTTCTG ACACCACGATCAAGCATCAGGTTCCTCACCT ]
consensusID : consensus_7435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[TTTTTTTTTTTTTTTGGAGACTGAAAAGGAACAATAATTAGGTTTCAAGGTGCTGAAACACAAGAGGGTAGTAATCATGGGGGTGGTTTATGGATACCTTAACTTTTAATAAAAACGGGGAATCAAGTAAAGACCCTTAACTGGTCTCAAACCAACAACTATTACCATTTCCCAAACTTTTCCCACATGCCATATATTTTTGGGGTAACATTTACCACTACCAAGAAATAGAATTGGAGCTCAACTGAAGTTACCAAAAATCCCCGCAAGAACATGAACCTTCTCTTAAATGAAGAAATCGATTTGCATCCCTTACAATTATGCACCTCCCATAAATCTTGCTTAAAAATTTAACGGCATTATTACAATCTCCACAAACCCCGAAGGTTTTTGCTATCCCAATAGGCGTGCCTGGGGCAATGCTTATCAATCCCAAGGCAATTGCAAGCTTCTCGCTTTGAAAAGCTAGGGAGCTCTCCTTCACATCCCCATCATCAATATCTAGGAACACATGGGAAGGATCTGGAACATATCCCGCAACTTTCAATTGGTGACACATTTCACTTAACAACTCGGATATGTCCTCCTTGGTTGAATGGCTTTTATCCCCAGATATTAACTCATGAATTACCCCATCAATTTCTATTGGAGCTGGTTCCAGGTACCTTCTGGACACCACGATTAA]
[+] EMBL CA763592 [TTTTTTTTTTTTTTTGGAGACTGAAAAGGAACAATAATTAGGTTTCAAGGTGCTGAAACACAAGAGGGTAGTAATCATGGGGGTGGTTTATGGATACCTTAACTTTTAATAAAAACGGGGAATCAAGTAAAGACCCTTAACTGGTCTCAAACCAACAACTATTACCATTTCCCAAACTTTTCCCACATGCCATATATTTTTGGGGTAACATTTACCACTACCAAGAAATAGAATTGGAGCTCAACTGAAGTTACCAAAAATCCCCGCAAGAACATGAACCTTCTCTTAAATGAAGAAATCGATTTGCATCCCTTACAATTATGCACCTCCCATAAATCTTGCTTAAAAATTTAACGGCATTATTACAATCTCCACAAACCCCGAAGGTTTTTGCTATCCCAATAGGCGTGCCTGGGGCAATGCTTATCAATCCCAAGGCAATTGCAAGCTTCTCGCTTTGAAAAGCTAGGGAGCTCTCCTTCACATCCCCATCATCAATATCTAGGAACACATGGGAAGGATCTGGAACATATCCCGCAACTTTCAATTGGTGACACATTTCACTTAACAACTCGGATATGTCCTCCTTGGTTGAATGGCTTTTATCCCCAGATATTAACTCATGAATTACCCCATCAATTTCTATTGGAGCTGGTTCCAGGTACCTTCTGGACACCACGATTAA]
consensusID : consensus_7435#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[TTTTTTTTTTTTTTTTTCTTAAAGACCCTCAACTGTTCTCAGACGAACAACTATAACCATTTCCAAAACTTTTCCCACATGCCATATATTTTTGGGTTAACATTTACAACTACAAAGAAATAGAATTGTAGCTCAACTGAAGTTACCAAAAATCCCCGCAAGAGCATGATCCTTCTCTGAAATGATAAAATCGATTTGCATCCCTAACAATTATGCACCTCCCATAAATCTTGCTTAAAAGTTTAACGGCATTATAACAATCTCCACAAACCCGGAGGTTCTTTGCTATCCAAATAGGCGTGCCTGGGGCAGGGCTTATCAATCCAAAGGCAATTGCAAGCTTCTCGCTGTGAAAAGCTAGGGAGCTCTCCTTCACATCCTCATCATCAATATTTAGTAGCACATGTGAAGTATCTGGAACATATCCGGCAACTTTCAATTGCTGACACATTTCACTTAGCATCTCGTATATGTCCTCCTTGCTCGAAGGGCTTTTATCCCCAAATATGAACTCAGGAATTACACCATCAATTTCTATTGAGCTGCTTCCAGGAACCTTCTGCACACCACGATCAAGCATCAGCTCCCTCACCTTAGGCACTCCTGCCCAGTTTCCATCTAGGGCATATATTTGGGATAGCAGCACATACCCTGCGGGATCATTTGGCGCAGCCCCAATAG]
[+] EMBL CA762012 [TTTTTTTTTTTTTTTTTCTTAAAGACCCTCAACTGTTCTCAGACGAACAACTATAACCATTTCCAAAACTTTTCCCACATGCCATATATTTTTGGGTTAACATTTACAACTACAAAGAAATAGAATTGTAGCTCAACTGAAGTTACCAAAAATCCCCGCAAGAGCATGATCCTTCTCTGAAATGATAAAATCGATTTGCATCCCTAACAATTATGCACCTCCCATAAATCTTGCTTAAAAGTTTAACGGCATTATAACAATCTCCACAAACCCGGAGGTTCTTTGCTATCCAAATAGGCGTGCCTGGGGCAGGGCTTATCAATCCAAAGGCAATTGCAAGCTTCTCGCTGTGAAAAGCTAGGGAGCTCTCCTTCACATCCTCATCATCAATATTTAGTAGCACATGTGAAGTATCTGGAACATATCCGGCAACTTTCAATTGCTGACACATTTCACTTAGCATCTCGTATATGTCCTCCTTGCTCGAAGGGCTTTTATCCCCAAATATGAACTCAGGAATTACACCATCAATTTCTATTGAGCTGCTTCCAGGAACCTTCTGCACACCACGATCAAGCATCAGCTCCCTCACCTTAGGCACTCCTGCCCAGTTTCCATCTAGGGCATATATTTGGGATAGCAGCACATACCCTGCGGGATCATTTGGCGCAGCCCCAATAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7435#0 ------------------------------------------------------------
consensus_7435#2 ------------------------------------------------------------
consensus_7435#1 TTTTTTTTTTTTTTTGGAGACTGAAAAGGAACAATAATTAGGTTTCAAGGTGCTGAAACA 60
consensus_7435#0 ------------------------------------------------------------
consensus_7435#2 ------------------------------------------------TTTTTTTTTTTT 12
consensus_7435#1 CAAGAGGGTAGTAATCATGGGGGTGGTTTATGGATACCTTAACTTTTAATAAAAACGGGG 120
consensus_7435#0 --------------------TTTTTTTT-------TTTTTTTTTTTTTTTCCAAAACTTT 33
consensus_7435#2 TTTTTCTTAAAGACCCTCAACTGTTCTCAGACGAACAACTATAACCATTTCCAAAACTTT 72
consensus_7435#1 AATCAAGTAAAGACCCTTAACTGGTCTCAAACCAACAACTATTACCATTTCCCAAACTTT 180
* * * * * ***** *******
consensus_7435#0 TCCCACATGCCATATATTTTTGGGTTAACATTTACAACTACAAAGAAATAGAATTGTAGC 93
consensus_7435#2 TCCCACATGCCATATATTTTTGGGTTAACATTTACAACTACAAAGAAATAGAATTGTAGC 132
consensus_7435#1 TCCCACATGCCATATATTTTTGGGGTAACATTTACCACTACCAAGAAATAGAATTGGAGC 240
************************ ********** ***** ************** ***
consensus_7435#0 TCAACTGAAGTTACCAAAAATCCCCGCAAGAGCATGATCCTTCTCTGAAATGATAAAATC 153
consensus_7435#2 TCAACTGAAGTTACCAAAAATCCCCGCAAGAGCATGATCCTTCTCTGAAATGATAAAATC 192
consensus_7435#1 TCAACTGAAGTTACCAAAAATCCCCGCAAGAACATGAACCTTCTCTTAAATGAAGAAATC 300
******************************* ***** ******** ****** *****
consensus_7435#0 GATTTGCATCCCTAACAATTATGCACCTCCCATAAATCTTGCTTAAAAGTTTAACGGCAT 213
consensus_7435#2 GATTTGCATCCCTAACAATTATGCACCTCCCATAAATCTTGCTTAAAAGTTTAACGGCAT 252
consensus_7435#1 GATTTGCATCCCTTACAATTATGCACCTCCCATAAATCTTGCTTAAAAATTTAACGGCAT 360
************* ********************************** ***********
consensus_7435#0 TATAACAATCTCCACAAACCCGGAGGTTCTTTGTTATCCTAATAGGCGTGCCTGGGGCAG 273
consensus_7435#2 TATAACAATCTCCACAAACCCGGAGGTTCTTTGCTATCCAAATAGGCGTGCCTGGGGCAG 312
consensus_7435#1 TATTACAATCTCCACAAACCCCGAAGGTTTTTGCTATCCCAATAGGCGTGCCTGGGGCAA 420
*** ***************** ** * * **** ***** *******************
consensus_7435#0 TGCTTATCAATCCAAAGGCAATTGCAAGCTTCTCGCTGTGAAAAGCTAGGGAGCTCTCCT 333
consensus_7435#2 GGCTTATCAATCCAAAGGCAATTGCAAGCTTCTCGCTGTGAAAAGCTAGGGAGCTCTCCT 372
consensus_7435#1 TGCTTATCAATCCCAAGGCAATTGCAAGCTTCTCGCTTTGAAAAGCTAGGGAGCTCTCCT 480
************ *********************** **********************
consensus_7435#0 TCACATCCTCATCATCAATATCTAGTACCACATGTGAAGTATCTGGAACATATCCTGCAA 393
consensus_7435#2 TCACATCCTCATCATCAATATTTAGTAGCACATGTGAAGTATCTGGAACATATCCGGCAA 432
consensus_7435#1 TCACATCCCCATCATCAATATCTAGGAACACATGGGAAGGATCTGGAACATATCCCGCAA 540
******** ************ *** * ****** **** *************** ****
consensus_7435#0 CTTTCAATTGCTGACACATTTCACTTAGCATCTCGAATATGGCCTCCTTGCTTGAAGGGC 453
consensus_7435#2 CTTTCAATTGCTGACACATTTCACTTAGCATCTCGTATATGTCCTCCTTGCTCGAAGGGC 492
consensus_7435#1 CTTTCAATTGGTGACACATTTCACTTAACAACTCGGATATGTCCTCCTTGGTTGAATGGC 600
********** **************** ** **** ***** ******** * *** ***
consensus_7435#0 TTTTATCCCCAGATATGAACTCATGAATTACACCATCAATTTCTATTG-AGCTGCTTCCA 512
consensus_7435#2 TTTTATCCCCAAATATGAACTCAGGAATTACACCATCAATTTCTATTG-AGCTGCTTCCA 551
consensus_7435#1 TTTTATCCCCAGATATTAACTCATGAATTACCCCATCAATTTCTATTGGAGCTGGTTCCA 660
*********** **** ****** ******* **************** ***** *****
consensus_7435#0 GGTACCTTCTGCACACCACGATCAAGCATGAGCTTCCTCACCTTATGCACTCCTGTCCAG 572
consensus_7435#2 GGAACCTTCTGCACACCACGATCAAGCATCAGCTCCCTCACCTTAGGCACTCCTGCCCAG 611
consensus_7435#1 GGTACCTTCTGGACACCACGATTAA----------------------------------- 685
** ******** ********** **
consensus_7435#0 TTTCCATCTAGGGCATATATGTTGGATAAGCACAAATACCCGGGCGGGATCATTTGGGTG 632
consensus_7435#2 TTTCCATCTAGGGCATATATTTGGGATAGCAGCACATACCCTG-CGGGATCATTTGG-CG 669
consensus_7435#1 ------------------------------------------------------------
consensus_7435#0 CAGCCCTCAATAAGCATAAGGGCCTGCTTTTCCTTCCACGGTCAAAGTTCCCT 685
consensus_7435#2 CAGCCC-CAATAG---------------------------------------- 681
consensus_7435#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||