These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1338 fasta sequence [ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGTCGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGGCATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGTTTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGCCGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGGGGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGG-AGGCTCCCGGTGCTCATCTACTTCCACGGCGGCGCGTTCGTCGTCG-AGTCGGCGTTCGACCCGGTGTACCACAACTACCTCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCCCCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGT-GGACGGTGCTCAGGTGGGTGGCCGCCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGTTCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCTGAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGTAAATTAAAACGTAAAAAA] [+] EMBL AK105839 [ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGTCGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGGCATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGTTTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGCCGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGGGGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGG AGGCTCCCGGTGCTCATCTACTTCCACGGCGGCGCGTTCGTCGTCG AGTCGGCGTTCGACCCGGTGTACCACAACTACCTCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCCCCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGT GGACGGTGCTCAGGTGGGTGGCCGCCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGTTCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCTGAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCG ] [+] EMBL AU065257 [ GGTGTCTCTCACTCGCTTTGTACGTACGTTGCCGCCTGCCCATGGCGTCGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGGCATTGCGGA CAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGTTTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGCCGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGGGGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGGAAAGCTCCCGGTGCTCATCTACTTCCACGGCGGCGCGTTCGTCGTCGAAGTCGGCGTTCGACCCGGTGTACCACAACTACCTCAANGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTAACGCCTGGCCCCCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGTGGGAAGGTGCTCANGTGGGTGGCCGCCGAAATGCAANGCGGCGCGGACTCGTGG ] [+] EMBL AU095246 [ CGCGTACNTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCTGAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGTAAATTAAAACGTAAAAAA] consensusID : consensus_7441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [ACATTGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTTTGAATTTTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCAAAGGTACACTTCGTTACGTACCTCCGTGAAAAAAAAAAAAGG] [-] EMBL CB682160 [ACATTGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTTTGAATTTTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCAAAGGTACACTTCGTTACGTACCTCCGTGAAAAAAAAAAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7441#0 ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGT 60 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 CGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGG 120 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 CATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGT 180 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 TTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGC 240 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 CGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGG 300 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 GGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGGAGGCTCCCGGTGCTCATCT 360 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 ACTTCCACGGCGGCGCGTTCGTCGTCGAGTCGGCGTTCGACCCGGTGTACCACAACTACC 420 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 TCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCC 480 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 CCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGTGGACGGTGCTCAGGTGGGTGGCCG 540 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 CCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGT 600 consensus_7441#1 ------------------------------------------------------------ consensus_7441#0 TCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGC 660 consensus_7441#1 ---------------------------ACATTGCGCACAACCTCGCGATGCGCGCGGGGC 33 **** **************************** consensus_7441#0 AGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGA 720 consensus_7441#1 AGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGA 93 ************************************************************ consensus_7441#0 AATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGA 780 consensus_7441#1 AATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGA 153 ************************************************************ consensus_7441#0 TGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCA 840 consensus_7441#1 TGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCA 213 ************************************************************ consensus_7441#0 CCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGT 900 consensus_7441#1 CCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGT 273 ************************************************************ consensus_7441#0 ACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCG 960 consensus_7441#1 ACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCG 333 ************************************************************ consensus_7441#0 GCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGG 1020 consensus_7441#1 GCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGG 393 ************************************************************ consensus_7441#0 CCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCT 1080 consensus_7441#1 CCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTTT 453 ********************************************************** * consensus_7441#0 GAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGT 1140 consensus_7441#1 GAATTTTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGT 513 ***** ****************************************************** consensus_7441#0 AATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTT 1200 consensus_7441#1 AATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTT 573 ************************************************************ consensus_7441#0 TCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAG 1260 consensus_7441#1 TCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAG 633 ************************************************************ consensus_7441#0 AATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGT 1320 consensus_7441#1 AATTGCAAAGGTACACTTCGTTACGTACCTCCGTGAAAAAAAAAAAAGG----------- 682 ******* * * * ********************** ** ** consensus_7441#0 AAATTAAAACGTAAAAAA 1338 consensus_7441#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||