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Oryza sativa
cluster # 7441 cluster # 7441       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7441#0 length = 1338 sequences # 3  
consensus_7441#1 length = 682 sequences # 1  

consensusID : consensus_7441#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1338
fasta sequence
                              [ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGTCGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGGCATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGTTTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGCCGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGGGGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGG-AGGCTCCCGGTGCTCATCTACTTCCACGGCGGCGCGTTCGTCGTCG-AGTCGGCGTTCGACCCGGTGTACCACAACTACCTCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCCCCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGT-GGACGGTGCTCAGGTGGGTGGCCGCCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGTTCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCTGAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGTAAATTAAAACGTAAAAAA]

[+] EMBL AK105839             [ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGTCGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGGCATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGTTTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGCCGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGGGGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGG AGGCTCCCGGTGCTCATCTACTTCCACGGCGGCGCGTTCGTCGTCG AGTCGGCGTTCGACCCGGTGTACCACAACTACCTCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCCCCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGT GGACGGTGCTCAGGTGGGTGGCCGCCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGTTCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCTGAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCG                                                                                                                                 ]
[+] EMBL AU065257             [            GGTGTCTCTCACTCGCTTTGTACGTACGTTGCCGCCTGCCCATGGCGTCGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGGCATTGCGGA CAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGTTTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGCCGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGGGGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGGAAAGCTCCCGGTGCTCATCTACTTCCACGGCGGCGCGTTCGTCGTCGAAGTCGGCGTTCGACCCGGTGTACCACAACTACCTCAANGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTAACGCCTGGCCCCCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGTGGGAAGGTGCTCANGTGGGTGGCCGCCGAAATGCAANGCGGCGCGGACTCGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU095246             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGCGTACNTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCTGAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGTAAATTAAAACGTAAAAAA]


>consensus_7441#0 ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGT CGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGG CATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGT TTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGC CGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGG GGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGGAGGCTCCCGGTGCTCATCT ACTTCCACGGCGGCGCGTTCGTCGTCGAGTCGGCGTTCGACCCGGTGTACCACAACTACC TCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCC CCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGTGGACGGTGCTCAGGTGGGTGGCCG CCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGT TCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGC AGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGA AATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGA TGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCA CCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGT ACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCG GCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGG CCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCT GAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGT AATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTT TCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAG AATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGT AAATTAAAACGTAAAAAA



consensusID : consensus_7441#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [ACATTGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTTTGAATTTTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCAAAGGTACACTTCGTTACGTACCTCCGTGAAAAAAAAAAAAGG]

[-] EMBL CB682160             [ACATTGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTTTGAATTTTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCAAAGGTACACTTCGTTACGTACCTCCGTGAAAAAAAAAAAAGG]


>consensus_7441#1 ACATTGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCG GCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGG CGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGG CGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCG ACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGT GGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACA ACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCG ACACCTAGCAAGCACATCACTAGCAGCAGCTTTGAATTTTGATCCATCTTCAACGTGGCA GCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATA GCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGT ACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCAAAGGTACACTTCGTTACGTA CCTCCGTGAAAAAAAAAAAAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7441#0      ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGT 60
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      CGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGG 120
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      CATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGT 180
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      TTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGC 240
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      CGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGG 300
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      GGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGGAGGCTCCCGGTGCTCATCT 360
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      ACTTCCACGGCGGCGCGTTCGTCGTCGAGTCGGCGTTCGACCCGGTGTACCACAACTACC 420
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      TCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCC 480
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      CCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGTGGACGGTGCTCAGGTGGGTGGCCG 540
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      CCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGT 600
consensus_7441#1      ------------------------------------------------------------
                                                                                  

consensus_7441#0      TCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGC 660
consensus_7441#1      ---------------------------ACATTGCGCACAACCTCGCGATGCGCGCGGGGC 33
                                                 **** ****************************

consensus_7441#0      AGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGA 720
consensus_7441#1      AGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGA 93
                      ************************************************************

consensus_7441#0      AATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGA 780
consensus_7441#1      AATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGA 153
                      ************************************************************

consensus_7441#0      TGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCA 840
consensus_7441#1      TGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCA 213
                      ************************************************************

consensus_7441#0      CCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGT 900
consensus_7441#1      CCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGT 273
                      ************************************************************

consensus_7441#0      ACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCG 960
consensus_7441#1      ACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCG 333
                      ************************************************************

consensus_7441#0      GCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGG 1020
consensus_7441#1      GCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGG 393
                      ************************************************************

consensus_7441#0      CCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCT 1080
consensus_7441#1      CCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTTT 453
                      ********************************************************** *

consensus_7441#0      GAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGT 1140
consensus_7441#1      GAATTTTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGT 513
                      ***** ******************************************************

consensus_7441#0      AATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTT 1200
consensus_7441#1      AATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTT 573
                      ************************************************************

consensus_7441#0      TCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAG 1260
consensus_7441#1      TCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAG 633
                      ************************************************************

consensus_7441#0      AATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGT 1320
consensus_7441#1      AATTGCAAAGGTACACTTCGTTACGTACCTCCGTGAAAAAAAAAAAAGG----------- 682
                      ******* * *  *  **********************     **  **           

consensus_7441#0      AAATTAAAACGTAAAAAA 1338
consensus_7441#1      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)