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Oryza sativa
cluster # 7445 cluster # 7445       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7445#0 length = 2030 sequences # 4  

consensusID : consensus_7445#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2030
fasta sequence
                              [ACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGATGCCCAGCTTGAGAATCGGGCGGCCGCGCCGTCCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCTGGGAGGGTGAGAGCCCCGTCCGGCCCGGACCCTGTCGCCCCACGAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGCGAGGACCAGGCTTTGTCCGACCTTCGTGAAAAGCATCAATTTGACCTGGAGAGATTAACGCTAACATCGCAGCCACTCAGAACATTGGCGTTATTTGCATTAGCCATTGGACAGAGTATAAAAAGCACATGTTTATGTGTTCTGAAAGATAGTGCTCGGTTGAAGTTCTTGGTTCTTTTGGTTGCTTCTGCCTGTACTCCGCTCTTGTTAACTAACGGTCCACATGAAAAGCATGTTCAGGAGCTGCTTTGGTATATCAGATTTGGATTATGGTGGGTCATACTAGGGGTGGCTTCATCCATTGGGTTAGGCTCTGGTTTGCACACATTTGTATTGTATTTAGGGCCTCATATTGCCCTTTTTACAATCAAGGCAGTTCATTGCGGTCGGACTGATTTAAAGAGTGCTCCTTATGATACTATTCTCCTTAAAATGAGACCTTCATGGTTGGAGAAAGACTGTCTAGAATTTGGACCGCCAATGTACCAGGAAACAATTCCATTTAGCAAAATACTGCATGAAGTTCACCTTGAAGCTGTTCTCTGGGGCATTGGAACTGCACTTGGAGAACTTCCTCCATATTTCCTCTCGAGAGCAGCTAGCATGTCAGGACGCAAACTAGATGAGCTGGAAGAGTTGGATGCTTCCGTTTCAGGAGAAGGTTTTCTATCCTCAACTCTGCATCGGGCTAAAAGATGGCTTATGTCTCACTCACAGTATCTTAACTTCCCTA-CCA-TC-TTA-TTACTTG-CTTCGGTGCCAAA-CCCCCTCTTCGATCTTGCTGGCATTTTGTGTGGGCAATTTAACATCCCATTCTGGAAGTTCTTTCTAGCAACTTTAATTGGAAAGGCTGTTATTAAGGTTTATATCCAGACAACATTAGTAATTACTCTCTGCAATAACCAACTTCTTGATTTGGTGGAGAAAAGAATTATGTGGGTATTTGGCAATGTTCCTATGGTATCATCCGTCCTTCCCTCTTTAGTTGCCAAGTTGAAGACAGCCAAGAGCAAGTTTTTATCATCCAGTGTTGCTGCATCAGCATCAAGTGTTGTGAAGGAAACGAAGTGGAATCTATCATTCTCTTTGATCTGGAATACCGTGGTGTGGCTTTTGATCATGAACTTCATCGTTCAGATAATTACTTCTACAGCACAAAGTTATCTCAAGAGACAACAAGAGCTAGAGATCCGGAAGAAGTTGTCAGCGACGATACAAACTGTTTCTGAAACTACTGGCTTATCAAATTAATTCAGCCAGATCATTCTTTCTAATATACAAATTTCACATTCATGCCATCAATTTCTTCCCACACCTGAGGAGGATACAATTGACTTGGCAATTCCAAATATGGTTAATTTAGAAGTTACAACGAGCTGGAAAACCGGTATTCTTCAAGAATTTACATTGATATAGTTGTCACATTGTACAGTCCTGCGCTTTCCAAAAAGAAAAAAAAAACATTGTACATAACCTGTCCCATCAAGCCATTACAGGAGAATTAGGGCCCCTGCATTATTGTGGAGCGCTACTTATTGCTGTACTTAATTGAAAGGCACAAAAAGGAAATGCATGACTAGCTCTCCAATGTAATGCCTCCCCAGCTACAATTTTTGGGGCCCATTTGTACATAGTAAAACCAAGGTAGTATCAATTACACAGGGAATCAAAGCTATTCATGCCCCTG]

[+] EMBL AK105438             [ACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGATGCCCAGCTTGAGAATCGGGCGGCCGCGCCGTCCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCTGGGAGGGTGAGAGCCCCGTCCGGCCCGGACCCTGTCGCCCCACGAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGCGAGGACCAGGCTTTGTCCGACCTTCGTGAAAAGCATCAATTTGACCTGGAGAGATTAACGCTAACATCGCAGCCACTCAGAACATTGGCGTTATTTGCATTAGCCATTGGACAGAGTATAAAAAGCACATGTTTATGTGTTCTGAAAGATAGTGCTCGGTTGAAGTTCTTGGTTCTTTTGGTTGCTTCTGCCTGTACTCCGCTCTTGTTAACTAACGGTCCACATGAAAAGCATGTTCAGGAGCTGCTTTGGTATATCAGATTTGGATTATGGTGGGTCATACTAGGGGTGGCTTCATCCATTGGGTTAGGCTCTGGTTTGCACACATTTGTATTGTATTTAGGGCCTCATATTGCCCTTTTTACAATCAAGGCAGTTCATTGCGGTCGGACTGATTTAAAGAGTGCTCCTTATGATACTATTCTCCTTAAAATGAGACCTTCATGGTTGGAGAAAGACTGTCTAGAATTTGGACCGCCAATGTACCAGGAAACAATTCCATTTAGCAAAATACTGCATGAAGTTCACCTTGAAGCTGTTCTCTGGGGCATTGGAACTGCACTTGGAGAACTTCCTCCATATTTCCTCTCGAGAGCAGCTAGCATGTCAGGACGCAAACTAGATGAGCTGGAAGAGTTGGATGCTTCCGTTTCAGGAGAAGGTTTTCTATCCTCAACTCTGCATCGGGCTAAAAGATGGCTTATGTCTCACTCACAGTATCTTAACTTCCCTA CCA TC TTA TTACTTG CTTCGGTGCCAAA CCCCCTCTTCGATCTTGCTGGCATTTTGTGTGGGCAATTTAACATCCCATTCTGGAAGTTCTTTCTAGCAACTTTAATTGGAAAGGCTGTTATTAAGGTTTATATCCAGACAACATTAGTAATTACTCTCTGCAATAACCAACTTCTTGATTTGGTGGAGAAAAGAATTATGTGGGTATTTGGCAATGTTCCTATGGTATCATCCGTCCTTCCCTCTTTAGTTGCCAAGTTGAAGACAGCCAAGAGCAAGTTTTTATCATCCAGTGTTGCTGCATCAGCATCAAGTGTTGTGAAGGAAACGAAGTGGAATCTATCATTCTCTTTGATCTGGAATACCGTGGTGTGGCTTTTGATCATGAACTTCATCGTTCAGATAATTACTTCTACAGCACAAAGTTATCTCAAGAGACAACAAGAGCTAGAGATCCGGAAGAAGTTGTCAGCGACGATACAAACTGTTTCTGAAACTACTGGCTTATCAAATTAATTCAGCCAGATCATTCTTTCTAATATACAAATTTCACATTCATGCCATCAATTTCTTCCCACACCTGAGGAGGATACAATTGACTTGGCAATTCCAAATATGGTTAATTTAGAAGTTACAACGAGCTGGAAAACCGGTATTCTTCAAGAATTTACATTGATATAGTTGTCACATTGTACAGTCCTGCGCTTTCCAAAAAGAAAAAAAAAACATTGTACATAACCTGTCCCATCAAGCCATTACAGGAGAATTAGGGCCCCTGCATTATTGTGGAGCGCTACTTATTGCTGTACTTAATTGAAAGGCACAAAAAGGAAATGCATGACTAGCTCTCCAATGTAATGCCTCCCCAGCTACAATTTCTGGGGCCCATTTGTACATAGTAAAACCAAGGTAGTATCAATTACACAGGGAATCAAAGCTATTCATGCCCCTG]
[+] EMBL BI805260             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTAACTTTCTTACCCATTCTTTATTTACTTGCCTTCGGT CCAAACCCCCCTCTTCGATCTTGCT GCATTTTGTGTGGCCAATTTAACATCCCATTCTGGAAGTTCTTTCTACCAACTTTAATTGGAAAGGCTGTTATTAAGGTTTATATCCAGACAACGTTAGTAATTACTCTCTGCAATAACCAACTTCTTGATTTGGTGGAGAAAAGAATTATGTGGGTATTTGGCAATGTTCCTATGGTATCATCCGTCCTTCCCTCTTTAGTTGCCAAGTTGAAGACAGCCAAGAGCAAGTTTTTATCAGCCAGTGTTGCTGCATCAGCATCAAGTGTTGTGAAGGAAACGAAGTGGAATCTATCATTCTCTTTGATCTGGAATACCGTGGTGTGGCTTTTGATCATGAACTTCATCGTTCAGATAATTACTTCTACAGCACAAAGTTATCTCAAGAGACAACAAGAGCTAGAGATCCGGAAGAAGTTGTCAGCGACGATAC AACTGTTTCTGAAACTACTGGCTTATCAAATTAATTCAGCCAGATCATTCTTTCTAATAAAAAAAaaa                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB638755             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAGAGCTAGAGATCCGGAAGAAGTTGTCAGCGACGATACAAACTGTTTCTGAAACTACTGGCTTATCAAATTAATTCAGCCAGATCATTCTTTTTAATATACAAATTTCACATTCATGCCATCAATTTCTTCCCACACCTGAGGAGGATACAATTGACTTGGCAATTCCAAATATGGTTAATTTAGAAGTTACAACGAGCTGGAAAACCGGTATTCTTCAAGAATTTACATTGATATAGTTGTCACATTGTACAGTCCTGCGCTTTCCAAAAAGAAAAAAAAAACATTGTACATAACCTGTCCCATCAAGCCATTACAGGAGAATTAGGGCCCCTGCATTATTGTGGAGCGCTACTTATTGCTGTACTTAATTGAAAGGCACAAAAAGGAAATGCATGACTAGCTCTCCAATGTAATGCCTCCCCAGCTACAATTTTTGGGGCCCATTTGTACATAGTAAAACCAA                                            ]
[-] EMBL CB641355             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTGGCAATTCCAAATATGGTTAATTTAGAAGTTACAACGAGCTGGAAAACCGGTATTCTTCAAGAATTTACATTAATATAGTTGTCACATTGAACAGTCTTGCGCTTTCCAAAAAGAAAAAAAAAACATTGTACATAACCTGTCCCATCAAGCCATTACAGGAGAATTAGGGCCCCTGCATTATTGTGGAGCGCTACTTATTGCTGTACTTAATTGAAAGGCACAAAAAGGAAATGCATGACTAGCTTTCCAATGTAATGCCTCCCCAGCTACAATTTTTGGGGCCCATTTGTACATAGTAAAACCAAGGTAGTATCAATTACACAGGGA                      ]


>consensus_7445#0 ACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGATGCCCAGCTTGAGAATCGGGCG GCCGCGCCGTCCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCCCAAGTC CCCTGGAAAGGGGCGCCTGGGAGGGTGAGAGCCCCGTCCGGCCCGGACCCTGTCGCCCCA CGAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTC CGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATG AAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGCGAGGACCAGGCTTT GTCCGACCTTCGTGAAAAGCATCAATTTGACCTGGAGAGATTAACGCTAACATCGCAGCC ACTCAGAACATTGGCGTTATTTGCATTAGCCATTGGACAGAGTATAAAAAGCACATGTTT ATGTGTTCTGAAAGATAGTGCTCGGTTGAAGTTCTTGGTTCTTTTGGTTGCTTCTGCCTG TACTCCGCTCTTGTTAACTAACGGTCCACATGAAAAGCATGTTCAGGAGCTGCTTTGGTA TATCAGATTTGGATTATGGTGGGTCATACTAGGGGTGGCTTCATCCATTGGGTTAGGCTC TGGTTTGCACACATTTGTATTGTATTTAGGGCCTCATATTGCCCTTTTTACAATCAAGGC AGTTCATTGCGGTCGGACTGATTTAAAGAGTGCTCCTTATGATACTATTCTCCTTAAAAT GAGACCTTCATGGTTGGAGAAAGACTGTCTAGAATTTGGACCGCCAATGTACCAGGAAAC AATTCCATTTAGCAAAATACTGCATGAAGTTCACCTTGAAGCTGTTCTCTGGGGCATTGG AACTGCACTTGGAGAACTTCCTCCATATTTCCTCTCGAGAGCAGCTAGCATGTCAGGACG CAAACTAGATGAGCTGGAAGAGTTGGATGCTTCCGTTTCAGGAGAAGGTTTTCTATCCTC AACTCTGCATCGGGCTAAAAGATGGCTTATGTCTCACTCACAGTATCTTAACTTCCCTAC CATCTTATTACTTGCTTCGGTGCCAAACCCCCTCTTCGATCTTGCTGGCATTTTGTGTGG GCAATTTAACATCCCATTCTGGAAGTTCTTTCTAGCAACTTTAATTGGAAAGGCTGTTAT TAAGGTTTATATCCAGACAACATTAGTAATTACTCTCTGCAATAACCAACTTCTTGATTT GGTGGAGAAAAGAATTATGTGGGTATTTGGCAATGTTCCTATGGTATCATCCGTCCTTCC CTCTTTAGTTGCCAAGTTGAAGACAGCCAAGAGCAAGTTTTTATCATCCAGTGTTGCTGC ATCAGCATCAAGTGTTGTGAAGGAAACGAAGTGGAATCTATCATTCTCTTTGATCTGGAA TACCGTGGTGTGGCTTTTGATCATGAACTTCATCGTTCAGATAATTACTTCTACAGCACA AAGTTATCTCAAGAGACAACAAGAGCTAGAGATCCGGAAGAAGTTGTCAGCGACGATACA AACTGTTTCTGAAACTACTGGCTTATCAAATTAATTCAGCCAGATCATTCTTTCTAATAT ACAAATTTCACATTCATGCCATCAATTTCTTCCCACACCTGAGGAGGATACAATTGACTT GGCAATTCCAAATATGGTTAATTTAGAAGTTACAACGAGCTGGAAAACCGGTATTCTTCA AGAATTTACATTGATATAGTTGTCACATTGTACAGTCCTGCGCTTTCCAAAAAGAAAAAA AAAACATTGTACATAACCTGTCCCATCAAGCCATTACAGGAGAATTAGGGCCCCTGCATT ATTGTGGAGCGCTACTTATTGCTGTACTTAATTGAAAGGCACAAAAAGGAAATGCATGAC TAGCTCTCCAATGTAATGCCTCCCCAGCTACAATTTTTGGGGCCCATTTGTACATAGTAA AACCAAGGTAGTATCAATTACACAGGGAATCAAAGCTATTCATGCCCCTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)