These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1209 fasta sequence [CGAATACGAACCGTGAGAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAAAATAATCCACTGACTTGAAGCAGAACCCAAATAAGCCACAGGTTGACGTAGGTAAATGGCTCCGAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAAGACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCACTGTCACTGTGCAGGTGGACGACAACAAGATGGGTGCAGCTGCAGATGAGACGCCGCCGGTGGTGCCGCTGCAGAGCCAAGAGACGCAGGACCCCAACGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAA--CCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCTTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCTGTTTGCTGCTTAATTACCG] [+] EMBL AK106505 [CGAATACGAACCGTGAGAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAAAATAATCCACTGACTTGAAGCAGAACCCAAATAAGCCACAGGTTGACGTAGGTAAATGGCTCCGAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAAGACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCACTGTCACTGTGCAGGTGGACGACAACAAGATGGGTGCAGCTGCAGATGAGACGCCGCCGGTGGTGCCGCTGCAGAGCCAAGAGACGCAGGACCCCAACGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAA CCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCTTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCTGTTTGCTGCTTAATTACCG] [-] EMBL CF315295 [ CGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAANNCCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTTGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCTTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTAaaaaaaaaa ] consensusID : consensus_7448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [GACACTGACATGCTGAAGGAGTAGAAAAATCCCTGACTTGAAGCAGAACCCATAAGCCCAGGTTGACGTAGGTAAATGGCTCCGAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAAGACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCACTGTCACTGTGCAGGTGGACGACAACAAGACGGGTGCAGCTGCAGATGAGACGCCGCCGGTGGTGCCGCTGCAGAGCCAAGAGACGCAGGACCCCAACGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTT] [+] EMBL CF315294 [GACACTGACATGCTGAAGGAGTAGAAAAATCCCTGACTTGAAGCAGAACCCATAAGCCCAGGTTGACGTAGGTAAATGGCTCCGAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAAGACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCACTGTCACTGTGCAGGTGGACGACAACAAGACGGGTGCAGCTGCAGATGAGACGCCGCCGGTGGTGCCGCTGCAGAGCCAAGAGACGCAGGACCCCAACGAGCCCAAGGCGGCGGCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGCGGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCACCCTGACTTGGGCGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAGCTCTCCGGCCGCCTCACCCTCACCTCCCGTGAGGGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTT] consensusID : consensus_7448#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [CTNCGGGTATCGAATAACGCTTGGTTGACCCGACACAAAGGCGGGGCGACCTGCCAGTATAATCCTCCCGCCCCGGGGGTCCGCTTGCAGAGCCCAAGAACGGCAGGGACCCCAACGAGTTCCAAGGGGCCGGCACGGAAGAAGAAGAAGCGCCCNGGGCATGGAAGAAAAATGAGTAGCAGGAGAACAGCCGGTGCATTGGAGTATGGCGGGTCCAAGAGGTACGTGGGGCGCGTGCTGAAACAGGTGCACCCTGAATTGGGAGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTTTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATTTCCGAGGGCACCAAGGCCATCTCCAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCCTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCTGTTTGCTGCTTAAAAAAAAAAAAAAAAAA] [-] EMBL CA762014 [CTNCGGGTATCGAATAACGCTTGGTTGACCCGACACAAAGGCGGGGCGACCTGCCAGTATAATCCTCCCGCCCCGGGGGTCCGCTTGCAGAGCCCAAGAACGGCAGGGACCCCAACGAGTTCCAAGGGGCCGGCACGGAAGAAGAAGAAGCGCCCNGGGCATGGAAGAAAAATGAGTAGCAGGAGAACAGCCGGTGCATTGGAGTATGGCGGGTCCAAGAGGTACGTGGGGCGCGTGCTGAAACAGGTGCACCCTGAATTGGGAGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATGTTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTTTCCGGCCGCCTCACCCTCACCTCCCGTGAGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACCACGCCATTTCCGAGGGCACCAAGGCCATCTCCAACTACCTTTCCTAAGCTAGCTAGTCTCTGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATCGATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGATCAGTCTGTAATCTCCCCTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCTGTTTGCTGCTTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7448#0 CGAATACGAACCGTGAGAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTA 60 consensus_7448#1 ------------------------------------------------------------ consensus_7448#2 ------------------------------------------------------------ consensus_7448#0 GAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCG 120 consensus_7448#1 ------------------------------------------------------------ consensus_7448#2 ------------------------------------------------------------ consensus_7448#0 ACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCA 180 consensus_7448#1 ------------------------------------------------------------ consensus_7448#2 ------------------------------------------------------------ consensus_7448#0 AGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGAC 240 consensus_7448#1 ------------------------------------------------------------ consensus_7448#2 ------------------------------------------------------------ consensus_7448#0 AGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGG 300 consensus_7448#1 ------------------------------------------------------------ consensus_7448#2 ------------------------------------------------------------ consensus_7448#0 AACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAAAAT 360 consensus_7448#1 -------------------------------GACACTGACATGCTGAAGGAGTAGAAA-- 27 consensus_7448#2 ------------------------------------------------------------ consensus_7448#0 AATCCACTGACTTGAAGCAGAACCCAAATAAGCCACAGGTTGACGTAGGTAAATGGCTCC 420 consensus_7448#1 AATCC-CTGACTTGAAGCAGAACCCA--TAAGCC-CAGGTTGACGTAGGTAAATGGCTCC 83 consensus_7448#2 ------------------------------------------------------------ consensus_7448#0 GAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAA 480 consensus_7448#1 GAAGCAGAAGGAGGCAGCGAACAAGAAGAAGAAGAAGAAGGAGGTGGCAGTGTTGGTGAA 143 consensus_7448#2 ------------------------------------------------------------ consensus_7448#0 GACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCAC 540 consensus_7448#1 GACCAAGACCAAGGTGGTGCAGCTCACCACCACCACCGCGGAGCTGGAGCTGGAGCCCAC 203 consensus_7448#2 ----------------------------------------------CTNCGGGTATCGAA 14 * ** * * consensus_7448#0 TGTCACTGTGCAGGTGGACGACAACAAGATGGGTGCAGCTGCAGATGAGACGC-----CG 595 consensus_7448#1 TGTCACTGTGCAGGTGGACGACAACAAGACGGGTGCAGCTGCAGATGAGACGC-----CG 258 consensus_7448#2 TAACGCTTGGTTGAC--CCGACACAAAGGCGGGGCGACCTGCCAGTATAATCCTCCCGCC 72 * * ** * * ***** *** *** * **** * * * * consensus_7448#0 CCGGTGGTGCCGCTGCAGAGCCAAGAGACGC--AGGACCCCAACGAGC-CCAAGGCGGCG 652 consensus_7448#1 CCGGTGGTGCCGCTGCAGAGCCAAGAGACGC--AGGACCCCAACGAGC-CCAAGGCGGCG 315 consensus_7448#2 CCGGGGGTCCGCTTGCAGAGCCCAAGAACGGCAGGGACCCCAACGAGTTCCAAGGGGCCG 132 **** *** * ********* * *** ************* ****** * ** consensus_7448#0 GCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGC 712 consensus_7448#1 GCAGCGAAGAAGAAGAAGCGCGCGGGGCATGGAAGAAAAAGGAGTAGGAGGAGGAGAGGC 375 consensus_7448#2 GCACGGAAGAAGAAGAAGCGCCCNGGGCATGGAAGAAAAATGAGTAGCAGGAGAACAGCC 192 *** **************** * **************** ****** ***** * ** * consensus_7448#0 GGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCAC 772 consensus_7448#1 GGTGCATTGGAGTATGGCGGGTACAAGAGGTACGTGTGGCGCGTGCTGAAGCAGGTGCAC 435 consensus_7448#2 GGTGCATTGGAGTATGGCGGGTCCAAGAGGTACGTGGGGCGCGTGCTGAAACAGGTGCAC 252 ********************** ************* ************* ********* consensus_7448#0 CCTGACTTGGGCGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATG 832 consensus_7448#1 CCTGACTTGGGCGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATG 495 consensus_7448#2 CCTGAATTGGGAGCCTCCGCCCAAACCATGGACGTCCTCGACATGATGATGGCCGACATG 312 ***** ***** ************************************************ consensus_7448#0 TTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTCTCCGGCCGCCTCACCCTC 892 consensus_7448#1 TTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCA-GCTCTCCGGCCGCCTCACCCTC 554 consensus_7448#2 TTCGAGCGCCTCGCCGACGAGGCCTCTCGCCTCTCCAAGCTTTCCGGCCGCCTCACCCTC 372 ************************************* *** ****************** consensus_7448#0 ACCTCCCGTGAGG--TTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACC 950 consensus_7448#1 ACCTCCCGTGAGGGGTTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACC 614 consensus_7448#2 ACCTCCCGTGAGG--TTCAGTCCGCCGTCCGCCTCGTCCTCCCCGCCGACCTCGCCAACC 430 ************* ********************************************* consensus_7448#0 ACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTC 1010 consensus_7448#1 ACGCCATCTCCGAGGGCACCAAGGCCATCTCTAACTACCTTTCCTAAGCTAGCTAGTCTC 674 consensus_7448#2 ACGCCATTTCCGAGGGCACCAAGGCCATCTCCAACTACCTTTCCTAAGCTAGCTAGTCTC 490 ******* *********************** **************************** consensus_7448#0 TGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATC 1070 consensus_7448#1 TGTTTCCCTTCTTTTAATTGCTTCAGTTT------------------------------- 703 consensus_7448#2 TGTTTCCCTTCTTTTAATTGCTTCAGTTTGCTTAGCTCAACAGAGTATGTACGTAGGATC 550 ***************************** consensus_7448#0 GATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGAT 1130 consensus_7448#1 ------------------------------------------------------------ consensus_7448#2 GATTAAGTGCAGGGGATTTGAAGCTTTAGTTGTAGCCTCTGTACAGAGCTACTAGTAGAT 610 consensus_7448#0 CAGTCTGTAATCTCCCTTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCT 1190 consensus_7448#1 ------------------------------------------------------------ consensus_7448#2 CAGTCTGTAATCTCCCCTGCTAGCTAATGTGATTGTGATGTCCAGTCAGTACTAGTACCT 670 consensus_7448#0 GTTTGCTGCTTAATTACCG---------- 1209 consensus_7448#1 ----------------------------- consensus_7448#2 GTTTGCTGCTTAAAAAAAAAAAAAAAAAA 699 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||