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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1459 fasta sequence
[CTCAAACCATCCCAATGAACAGAGTTTCAAAAGAGAAAGAAGTATAGCCCTTCAGGCTGTCACAGCACTTGTGTCTAAGAGCTCCACCTCCATCACACCATGACTGCAAGGTTGGCACTGCTCGCCAGCCTTCTTCTCCTGCTCCAACTGGTGCCGCCATCCTCTGCCGTGGTGTTGGAGCTCCACGGTAACGTCTACCCTATTGGCCATTTCTTCATCACCATGAACATCGGCGACCCGGCAAAATCCTACTTCCTGGACATCGACACCGGCAGCACCCTCACCTGGCTGCAGTGCGACGCCCCCTGCACGAATTGCAACATTGTACCACACGTGCTGTACAAGCCAACCCCAAAGAAGCTGGTGACCTGTGCCGACTCACTCTGCACTGACCTGTACACTGATCTGGGCAAGCCCAAGAGATGTGGATCCCAGAAGCAATGTGACTATGTGATTCAGTACGTCGACAGTTCATCCATGGGCGTGCTCGTCATCGACAGGTTCTCCCTCTCAGCAAGCAACGGCACCAATCCTACTACCATAGCCTTCGGCTGTGGGTACGACCAGGGGAAGAAGAATCGCAATGTGCCCATACCGGTAGACAGCATCCTCGGGCTCAGTAGAGGCAAGGTTACGCTGCTCTCGCAGCTCAAGTCCCAGGGGGTGATCACCAAACATGTCTTGGGCCATTGCATCAGCTCAAAAGGTGGGGGTTTCCTCTTCTTTGGGGATGCCCAGGTGCCAACTTCAGGTGTAACCTGGACCCCCATGAACAGAGAACATAAGTACTACTCTCCTGGGCATGGAACCTTGCACTTCGATTCAAATAGCAAGGCGATAAGCGCGGCACCAATGGCAGTGATATTTGACAGTGGTGCCACATACACCTACTTTGCTGCGCAGCCATACCAAGCGACTCTCTCAGTGGTGAAATCCACTCTCAACAGCGAATGTAAGTTTCTTACCGAGGTGACAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGGAAGGATAAAATCGTAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGGAATTCGCCGATGGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAGGGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCTGTCGTTAGCTGGAACAAACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCGCTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGAGTCTGCGATCACTTCGCGTCTCTGAATGAACTGAAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGGACATTCATATCTTAGAAAAGAAATGAATGATAAAGCATGTATGCTTCTGCCCATAAATAATGAAATGAAGTATANTTTA]
[+] EMBL AK110811 [CTCAAACCATCCCAATGAACAGAGTTTCAAAAGAGAAAGAAGTATAGCCCTTCAGGCTGTCACAGCACTTGTGTCTAAGAGCTCCACCTCCATCACACCATGACTGCAAGGTTGGCACTGCTCGCCAGCCTTCTTCTCCTGCTCCAACTGGTGCCGCCATCCTCTGCCGTGGTGTTGGAGCTCCACGGTAACGTCTACCCTATTGGCCATTTCTTCATCACCATGAACATCGGCGACCCGGCAAAATCCTACTTCCTGGACATCGACACCGGCAGCACCCTCACCTGGCTGCAGTGCGACGCCCCCTGCACGAATTGCAACATTGTACCACACGTGCTGTACAAGCCAACCCCAAAGAAGCTGGTGACCTGTGCCGACTCACTCTGCACTGACCTGTACACTGATCTGGGCAAGCCCAAGAGATGTGGATCCCAGAAGCAATGTGACTATGTGATTCAGTACGTCGACAGTTCATCCATGGGCGTGCTCGTCATCGACAGGTTCTCCCTCTCAGCAAGCAACGGCACCAATCCTACTACCATAGCCTTCGGCTGTGGGTACGACCAGGGGAAGAAGAATCGCAATGTGCCCATACCGGTAGACAGCATCCTCGGGCTCAGTAGAGGCAAGGTTACGCTGCTCTCGCAGCTCAAGTCCCAGGGGGTGATCACCAAACATGTCTTGGGCCATTGCATCAGCTCAAAAGGTGGGGGTTTCCTCTTCTTTGGGGATGCCCAGGTGCCAACTTCAGGTGTAACCTGGACCCCCATGAACAGAGAACATAAGTACTACTCTCCTGGGCATGGAACCTTGCACTTCGATTCAAATAGCAAGGCGATAAGCGCGGCACCAATGGCAGTGATATTTGACAGTGGTGCCACATACACCTACTTTGCTGCGCAGCCATACCAAGCGACTCTCTCAGTGGTGAAATCCACTCTCAACAGCGAATGTAAGTTTCTTACCGAGGTGACAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGGAAGGATAAAATCGTAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGGAATTCGCCGATGGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAGGGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCTGTCGTTAGCTGGAACAAACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCGCTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGAGTCTGCGATCACTTCGCGTCTCTGAATGAACTGAAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGGACATTCATATCTTAGAAAAGAAATGAATGATAAGGCATGTATGCTTCTGCCCATAAATAATGAAATGAAGTA ]
[+] EMBL AF308692 [ GGCTGTCACAGCACTTGTGTCTAAGAGCTCCACCTCCATCACACCATGACTGCAAGGTTGGCACTGCTCGCCAGCCTTCTTCTCCTGCTCCAACTGGTGCCGCCATCCTCTGCCGTGGTGTTGGAGCTCCACGGTAACGTCTACCCTATTGGCCATTTCTTCATCACCATGAACATCGGCGACCCGGCAAAATCCTACTTCCTGGACATCGACACCGGCAGCACCCTCACCTGGCTGCAGTGCGACGCCCCCTGCACGAATTGCAACATTGTACCACACGTGCTGTACAAGCCAACCCCAAAGAAGCTGGTGACCTGTGCCGACTCACTCTGCACTGACCTGTACACTGATCTGGGCAAGCCCAAGAGATGTGGATCCCAGAAGCAATGTGACTATGTGATTCAGTACGTCGACAGTTCATCCATGGGCGTGCTCGTCATCGACAGGTTCTCCCTCTCAGCAAGCAACGGCACCAATCCTACTACCATAGCCTTCGGCTGTGGGTACGACCAGGGGAAGAAGAATCGCAATGTGCCCATACCGGTAGACAGCATCCTCGGGCTCAGTAGAGGCAAGGTTACGCTGCTCTCGCAGCTCAAGTCCCAGGGGGTGATCACCAAACATGTCTTGGGCCATTGCATCAGCTCAAAAGGTGGGGGTTTCCTCTTCTTTGGGGATGCCCAGGTGCCAACTTCAGGTGTAACCTGGACCCCCATGAACAGAGAACATAAGTACTACTCTCCTGGGCATGGAACCTTGCACTTCGATTCAAATAGCAAGGCGATAAGCGCGGCACCAATGGCAGTGATATTTGACAGTGGTGCCACATACACCTACTTTGCTGCGCAGCCATACCAAGCGACTCTCTCAGTGGTGAAATCCACTCTCAACAGCGAATGTAAGTTTCTTACCGAGGTGACAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGGAAGGATAAAATCGTAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGGAATTCGCCGATGGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAGGGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCTGTCGTTAGCTGGAACAAACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCGCTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGAGTCTGCGATCACTTCGCGTCTCTGAATGAACTGAAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGGACATTCATATCTTAGAAAAGAAATGAATGATAAAGCATGTATGCTTCTGCCCATAAATAATGAAATGAAGTA ]
[+] EMBL CA765431 [ CAAGCATGTCTTGGGCCATTGCATCAGCTCAAAAGGAAAGGGTTTCCTCTCCTTTGGGGATGCCAAGGTGCCAACTTCAGGTGTAACCTGGTCCCCCATGAACAGAGAGCATAAGCACTATTCACCCAGGCAAGGAACCTTGCATTTCAATTCAAATAGCAAGCCGATAAGCGCAGCACCAATGGAAGTCATATTTGATAGTGGTGCCACGTACACCTACTTTGCTCTGCAGCCATACCACGCGACTCTCTCAGTAGTGAAATCCACTCTCAGCAAGGAATGTAAGTTTCTTACTGAGGTAAAAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGTAAGGATAAAATCAGAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGAAATTTGCCGATGGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAGGGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCCGTCGTTAGCTGGAACAAACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCGCTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGCGTCTGCGATCACTTCGCGTCTCTGAATAAACTGTAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGG CATTCATATCTTAGAAAAGAACTGAATGATAAAGCATGTATGCTTCTGNCCAT AAT ATGGAATGAAGTATANTTTA]
consensusID : consensus_7463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[CGAGCGGCAAAACCCTACTTCCTGGACATCGACACCGGCAGCACCCTCDCCTGGCTGCAGTGCGACTACCCCTGCATTAATTGCAACAAGGTACCACACGGGTTGTACAAGCCAGAACTAAAATATGCGGTGAAATGCACCGAACAACGGTGTGCCGACCTGTACGCTGATCTGAGAAAGCCGATGAAATGCGGGCCCAAGAACCAATGTCACTATGGGATTCAGTATGTTGGTGGGTCANBCATTGGCGTGCTCATCGTCGACAGCTTCTCCCTCCCAGCAAGCAATGGCACCAATCCTACCAGCATCGCATTTGGCTGTGGGTACAHTCAGGGGAAGAACAATCACAATGTGCCCACACCGGTAAACGGCATCCTCGGGCTCGGTAGAGGAAAGGTTACGCTGCTCTCACAGCTCAAGTCCCAGGGGGTGATCACCAAGCATGTCTTGGGCCMTTGCATCA]
[+] EMBL AA754302 [CGAGCGGCAAAACCCTACTTCCTGGACATCGACACCGGCAGCACCCTCDCCTGGCTGCAGTGCGACTACCCCTGCATTAATTGCAACAAGGTACCACACGGGTTGTACAAGCCAGAACTAAAATATGCGGTGAAATGCACCGAACAACGGTGTGCCGACCTGTACGCTGATCTGAGAAAGCCGATGAAATGCGGGCCCAAGAACCAATGTCACTATGGGATTCAGTATGTTGGTGGGTCANBCATTGGCGTGCTCATCGTCGACAGCTTCTCCCTCCCAGCAAGCAATGGCACCAATCCTACCAGCATCGCATTTGGCTGTGGGTACAHTCAGGGGAAGAACAATCACAATGTGCCCACACCGGTAAACGGCATCCTCGGGCTCGGTAGAGGAAAGGTTACGCTGCTCTCACAGCTCAAGTCCCAGGGGGTGATCACCAAGCATGTCTTGGGCCMTTGCATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7463#0 CTCAAACCATCCCAATGAACAGAGTTTCAAAAGAGAAAGAAGTATAGCCCTTCAGGCTGT 60
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 CACAGCACTTGTGTCTAAGAGCTCCACCTCCATCACACCATGACTGCAAGGTTGGCACTG 120
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 CTCGCCAGCCTTCTTCTCCTGCTCCAACTGGTGCCGCCATCCTCTGCCGTGGTGTTGGAG 180
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 CTCCACGGTAACGTCTACCCTATTGGCCATTTCTTCATCACCATGAACATCGGCGACCCG 240
consensus_7463#1 -----------------------------------------------------CGAGC-G 6
*** * *
consensus_7463#0 GCAAAATCCTACTTCCTGGACATCGACACCGGCAGCACCCTCACCTGGCTGCAGTGCGAC 300
consensus_7463#1 GCAAAACCCTACTTCCTGGACATCGACACCGGCAGCACCCTCDCCTGGCTGCAGTGCGAC 66
****** *********************************** *****************
consensus_7463#0 GCCCCCTGCACGAATTGCAACATTGTACCACACGTGCTGTACAAGCCAACCCCAAAGAAG 360
consensus_7463#1 TACCCCTGCATTAATTGCAACAAGGTACCACACGGGTTGTACAAGCCAGAACTAAAATAT 126
******** ********** ********** * *********** * *** *
consensus_7463#0 CTGGTGACCTGTGCCGACTCACTCTGCACTGACCTGTACACTGATCTGGGCAAGCCCAAG 420
consensus_7463#1 GCGGTGAAATGCACCGAACAACGGTGTGCCGACCTGTACGCTGATCTGAGAAAGCCGATG 186
***** ** **** ** ** * ********* ******** * ***** * *
consensus_7463#0 AGATGTGGATCCCAGAAGCAATGTGACTATGTGATTCAGTACGTCGACAGTTCATCCATG 480
consensus_7463#1 AAATGCGGGCCCAAGAACCAATGTCACTATGGGATTCAGTATGTTGGTGGGTCANBCATT 246
* *** ** ** **** ****** ****** ********* ** * * *** ***
consensus_7463#0 GGCGTGCTCGTCATCGACAGGTTCTCCCTCTCAGCAAGCAACGGCACCAATCCTACTACC 540
consensus_7463#1 GGCGTGCTCATCGTCGACAGCTTCTCCCTCCCAGCAAGCAATGGCACCAATCCTACCAGC 306
********* ** ******* ********* ********** ************** * *
consensus_7463#0 ATAGCCTTCGGCTGTGGGTACGACCAGGGGAAGAAGAATCGCAATGTGCCCATACCGGTA 600
consensus_7463#1 ATCGCATTTGGCTGTGGGTACAHTCAGGGGAAGAACAATCACAATGTGCCCACACCGGTA 366
** ** ** ************ *********** **** *********** *******
consensus_7463#0 GACAGCATCCTCGGGCTCAGTAGAGGCAAGGTTACGCTGCTCTCGCAGCTCAAGTCCCAG 660
consensus_7463#1 AACGGCATCCTCGGGCTCGGTAGAGGAAAGGTTACGCTGCTCTCACAGCTCAAGTCCCAG 426
** ************** ******* ***************** ***************
consensus_7463#0 GGGGTGATCACCAAACATGTCTTGGGCCATTGCATCAGCTCAAAAGGTGGGGGTTTCCTC 720
consensus_7463#1 GGGGTGATCACCAAGCATGTCTTGGGCCMTTGCATCA----------------------- 463
************** ************* ********
consensus_7463#0 TTCTTTGGGGATGCCCAGGTGCCAACTTCAGGTGTAACCTGGACCCCCATGAACAGAGAA 780
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 CATAAGTACTACTCTCCTGGGCATGGAACCTTGCACTTCGATTCAAATAGCAAGGCGATA 840
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 AGCGCGGCACCAATGGCAGTGATATTTGACAGTGGTGCCACATACACCTACTTTGCTGCG 900
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 CAGCCATACCAAGCGACTCTCTCAGTGGTGAAATCCACTCTCAACAGCGAATGTAAGTTT 960
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 CTTACCGAGGTGACAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGGAAGGATAAA 1020
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 ATCGTAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGGAATTCGCCGAT 1080
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 GGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAG 1140
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 GGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCTGTCGTTAGCTGGAACA 1200
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 AACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCG 1260
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 CTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGAGTCTGCGATCACT 1320
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 TCGCGTCTCTGAATGAACTGAAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGG 1380
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 ACATTCATATCTTAGAAAAGAAATGAATGATAAAGCATGTATGCTTCTGCCCATAAATAA 1440
consensus_7463#1 ------------------------------------------------------------
consensus_7463#0 TGAAATGAAGTATANTTTA 1459
consensus_7463#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||