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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 843 fasta sequence
[AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCACACATAAACATAGCGGCCGTGATCAACTGATCAGTCCAGCCTGACAGAGAATTCAGAGAGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGTATTCAGGGAGAATATCTGAATTGCATTGCACTTTGCATGATCGGGACATTCTCGTTAATTTCATAATTAAAATTCAGATGCTCTCTCTGTACGTAACTACGTATAATACTAATATACTTTGCTGAATTGCTTTGGTTCTTACTTGATGTGTGCAGGCAGGCAAGATCAAGACTACAGCGGTGCGTGCTTNCTGAACTGCCTGTGGACGAAGACGAACAGACANAGCTAGTGATCGATCGATGCTCTGACGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTANATAGAGCCTANGAGAGGTGGAGGATGCACTTACAGAGAGACAGAATGTGGTGGGTCTCTGCTTAATATTGTTAGTACCCACTTGGTTATTCCTCTGGTCAATGGGAAACTCCGTTAAG]
[+] EMBL CA757934 [AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCACACATAAACATAGCGGCCGTGATCAACTGATCAGTCCAGCCTGACAGAGAATTCAGAGAGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGTATTCAGGGAGAATATCTGAATTGCATTGCACTTTGCATGATCGGGACATTCTCGTTAATTTCATAATTAAAATTCAGATGCTCTCTCTGTACGTAACTACGTATAATACTAATATACTTTGCTGAATTGCTTTGGTTCTTACTTGATGTGTGCAGGCAGGCAAGATCAAGACTACAGCGGTGCGTGCTTNCTGAACTGCCTGTGGACGAAGACGAACAGACANAGCTAGTGATCGATCGATGCTCTGACGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTANATAGAGCCTANGAGAGGTGGAGGATGCACTTACAGAGAGACAGAATGTGGTGGGTCTCTGCTTAATATTGTTAGTACCCACTTGGTTATTCCTCTGGTCAATGGGAAACTCCGTTAAG]
consensusID : consensus_7483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 762 fasta sequence
[AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCC-ACACATAAACATAGCGGCCG-TGATCAACTGATC--AGTCCCAGCCTGACAGAGNAATTCAAGGAGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGCAGGCAAGATCAAGACTACAGCGGTGCGTGCTTCCTGAACTGCCTGTGGACGAAGACGAACAGACAAAGCTAGTGATCGATCGATGCTCTGACGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTAGATAGAGCCTAGGAGAGTAGGAGGATGCACTTACAGAGAGACAGAATGTGTTGTTCTCTGCTTAATTTGTTAGTTACCACACTGTTTAATTCCTCTGTTCAATGGGAAATTCGTTTAGGGTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSS1839A [AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCC ACACATAAACATAGCGGCCG TGATCAACTGATC AG ]
[+] EMBL OSS2481A [ AGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGANGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCATGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCAACACATAAACATAGCGGCCGTTGATCAACTGATCCAAGTCCCAGCCTGACAGAGNAATTCAAG ]
[+] EMBL AU097636 [ GAAGAAGAAGAGAGCCCTCGCATGGCGATGAGAGCTCGCATCTGGTANCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTGCAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCCTTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCTTATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCC ACACATAAACATAGCGGCCG TGATCAACTGATC AGT CCAGCCTGACAGAG AATTCAGAGAGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGCAGGCAAGATCAAGACTACAGCGGTGCGTGCTTCCTGAACTGCCTGTGGACGAAGACGAACAGACAAAGCTAGTGATCGATCGATGCTCTGACGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTAGATAGAGCCTAGGAGAGTAGGAGGATGCACTTACAGAGAGACAGAATGTGTTGTTCTCTGCTTAATTTGTTAGTTACCACACTGTTTAATTCCTCTGTTCAATGGGAAATTCGTTTAGGGTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7483#0 AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAG 60
consensus_7483#1 AGCTAGCAGCTATAGCTTAGCTGGAGATCGATCGAGAGGTAGAAGAAGAAGAAGAAGAAG 60
************************************************************
consensus_7483#0 AAGAAGA------------------------------------------GAGGCCTCGCA 78
consensus_7483#1 AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGCCTCGCA 120
******* ***********
consensus_7483#0 TGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTG 138
consensus_7483#1 TGGCGATGAGAGCTCGCATCTGGTAGCCAAGGATGACTTGCCTGTGTCTCTGCTCATGTG 180
************************************************************
consensus_7483#0 CAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCC 198
consensus_7483#1 CAGTAGAAGAAGATGCATTTCTAGCTGCTTTCTGCATATGTGATCTCACAGGCAGTCTCC 240
************************************************************
consensus_7483#0 TTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCT 258
consensus_7483#1 TTGGCTAGCCTGAGCGGCTCTCATCCTTCATGCCTGGCTCATCTCTTCTTAATGATCTCT 300
************************************************************
consensus_7483#0 TATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCA 318
consensus_7483#1 TATTAGTCACAGATCCTGTAGAGATTAGTTGATGTTTGATGCTTGTCCACTTCAGTGCCA 360
************************************************************
consensus_7483#0 CACATAAACATAGCGGCCGTGATCAACTGATCAGTCC-AGCCTGACAGAGAA-TTCAGAG 376
consensus_7483#1 CACATAAACATAGCGGCCGTGATCAACTGATCAGTCCCAGCCTGACAGAGNAATTCAAGG 420
************************************* ************ * **** *
consensus_7483#0 AGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATGTATTCAGGG 436
consensus_7483#1 AGCATGACAAGATCAGCTTCTGACAAACCGCGCGAGATTAACCAACAAATG--------- 471
***************************************************
consensus_7483#0 AGAATATCTGAATTGCATTGCACTTTGCATGATCGGGACATTCTCGTTAATTTCATAATT 496
consensus_7483#1 ------------------------------------------------------------
consensus_7483#0 AAAATTCAGATGCTCTCTCTGTACGTAACTACGTATAATACTAATATACTTTGCTGAATT 556
consensus_7483#1 ------------------------------------------------------------
consensus_7483#0 GCTTTGGTTCTTACTTGATGTGTGCAGGCAGGCAAGATCAAGACTACAGCGGTGCGTGCT 616
consensus_7483#1 ----------------------------CAGGCAAGATCAAGACTACAGCGGTGCGTGCT 503
********************************
consensus_7483#0 TNCTGAACTGCCTGTGGACGAAGACGAACAGACANAGCTAGTGATCGATCGATGCTCTGA 676
consensus_7483#1 TCCTGAACTGCCTGTGGACGAAGACGAACAGACAAAGCTAGTGATCGATCGATGCTCTGA 563
* ******************************** *************************
consensus_7483#0 CGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTANATAGAGCCTAN 736
consensus_7483#1 CGACAGCCACTCCTGCAGGCTGCAGCTTATGCACTGGTGCATCTGCTAGATAGAGCCTAG 623
************************************************ **********
consensus_7483#0 GAGAGGTGGAGGATGCACTTACAGAGAGACAGAATGTGGTGGGTCTCTGCTTAATATTGT 796
consensus_7483#1 GAGAGTAGGAGGATGCACTTACAGAGAGACAGAATGTGTTGT-TCTCTGCTTAAT-TTGT 681
***** ******************************* ** ************ ****
consensus_7483#0 TAGTACCCACTTGGTT--ATTCCTCTGGTCAATGGGAAACTCCGTTAAG----------- 843
consensus_7483#1 TAGTTACCACACTGTTTAATTCCTCTGTTCAATGGGAAATTCGTTTAGGGTGTGTTTAAA 741
**** **** *** ********* *********** ** *** *
consensus_7483#0 ---------------------
consensus_7483#1 AAAAAAAAAAAAAAAAAAAAA 762
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||