cluster # 7485

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Oryza sativa
cluster # 7485 cluster # 7485 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7485#0 length = 1101 sequences # 3

consensus_7485#1 length = 666 sequences # 1

consensusID : consensus_7485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1101
fasta sequence

                              [CCGACTTCAAAGGCGCACATACACACAAACAAACACCCTCCTAGTGCGGCTAGT-GCGGCTGCACTCG-CTTCAACTGCCACGCCAATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTACACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCACCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGG---CGGCGAC-GACG-ACGACGACGGCGCGGCGTCGTTCGGCGGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGTGTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCATGGATCAATGCCAGATTACCGATAATGCACATGACTCCTCCTACCCGTCGTGTATCAAGCTTGCATGAGTGGAAGTAATCAAGTAAACTGTAATATTGAGT]

[+] EMBL AK108756             [CCGACTTCAAAGGCGCACATACACACAAACAAACACCCTCCTAGTGCGGCTAGT GCGGCTGCACTCG CTTCAACTGCCACGCCAATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTACACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCACCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGG   CGGCGAC GACG ACGACGACGGCGCGGCGTCGTTCGGCGGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGTGTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCATGGATCAATGCCAGATTACCGATAATGCACATGACTCCTCCTACCCGTCGTGTATCAAGCTTGCATGAGTGGAAGTAATCAAGTAAACTGTAATATTGAGT]
[+] EMBL CB651599             [         AAGGCGCACATACACACAAACAAACACCCTCCTAGTGCGGCTAGTGGCGGCTGCACTCGACTTCAACTGCCACGCCAATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTACACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCACCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGG   CGGCGAC GACG ACGACGACGGCGCGGCGTCGTTCGGCGGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGNCAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAG                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C74199               [                                                                                                                                                                                                                  ACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCNGCGCCGCAGGGGGGAACCGGAACGGACGAACGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_7485#0
CCGACTTCAAAGGCGCACATACACACAAACAAACACCCTCCTAGTGCGGCTAGTGCGGCT
GCACTCGCTTCAACTGCCACGCCAATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTAC
ACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCA
CCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCC
GCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAG
TCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCC
ACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTC
CGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAG
CCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGGC
GGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATG
GCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGG
TGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGAC
CTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTC
GCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTC
AGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGT
GTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCC
AATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCATGGATCAATGCCAGATTACC
GATAATGCACATGACTCCTCCTACCCGTCGTGTATCAAGCTTGCATGAGTGGAAGTAATC
AAGTAAACTGTAATATTGAGT

consensusID : consensus_7485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CAAGCTTNTCCACCGAGTCCGACGTNTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGACGNCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGTGTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCAAAAAAAAAAAAAAAA]

[+] EMBL AU082991             [CAAGCTTNTCCACCGAGTCCGACGTNTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGACGNCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGTGTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCAAAAAAAAAAAAAAAA]




>consensus_7485#1
CAAGCTTNTCCACCGAGTCCGACGTNTCCGCCACGGCCGAGGACATGGCCGACGCCATAG
TCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCC
TCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGG
CGTCGTTCGACGNCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCC
GGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGG
CCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGG
CGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGT
CGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCC
ATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGC
TACCTACGTGTGTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAG
TAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCAAAAAAAAAA
AAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7485#0      CCGACTTCAAAGGCGCACATACACACAAACAAACACCCTCCTAGTGCGGCTAGTGCGGCT 60
consensus_7485#1      ------------------------------------------------------------
                                                                                  

consensus_7485#0      GCACTCGCTTCAACTGCCACGCCAATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTAC 120
consensus_7485#1      ------------------------------------------------------------
                                                                                  

consensus_7485#0      ACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCA 180
consensus_7485#1      ------------------------------------------------------------
                                                                                  

consensus_7485#0      CCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCC 240
consensus_7485#1      ------------------------------------------------------------
                                                                                  

consensus_7485#0      GCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAG 300
consensus_7485#1      ------------------------------------------------------------
                                                                                  

consensus_7485#0      TCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCC 360
consensus_7485#1      -------------------------------------------------CAAGCTTNTCC 11
                                                                         *** * ***

consensus_7485#0      ACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTC 420
consensus_7485#1      ACCGAGTCCGACGTNTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTC 71
                      ************** *********************************************

consensus_7485#0      CGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAG 480
consensus_7485#1      CGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAG 131
                      ************************************************************

consensus_7485#0      CCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGGC 540
consensus_7485#1      CCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGAC 191
                      ********************************************************** *

consensus_7485#0      GGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATG 600
consensus_7485#1      GNCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATG 251
                      * **********************************************************

consensus_7485#0      GCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGG 660
consensus_7485#1      GCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGG 311
                      ************************************************************

consensus_7485#0      TGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGAC 720
consensus_7485#1      TGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGAC 371
                      ************************************************************

consensus_7485#0      CTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTC 780
consensus_7485#1      CTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTC 431
                      ************************************************************

consensus_7485#0      GCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTC 840
consensus_7485#1      GCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTC 491
                      ************************************************************

consensus_7485#0      AGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGT 900
consensus_7485#1      AGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGT 551
                      ************************************************************

consensus_7485#0      GTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCC 960
consensus_7485#1      GTGTGTGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCC 611
                      ************************************************************

consensus_7485#0      AATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCATGGATCAATGCCAGATTACC 1020
consensus_7485#1      AATTGAATGACGAAGTAGCTAGCTAGCCTCCGGTTAATCAAAAAAAAAAAAAAAA----- 666
                      ****************************************   *  **    * *     

consensus_7485#0      GATAATGCACATGACTCCTCCTACCCGTCGTGTATCAAGCTTGCATGAGTGGAAGTAATC 1080
consensus_7485#1      ------------------------------------------------------------
                                                                                  

consensus_7485#0      AAGTAAACTGTAATATTGAGT 1101
consensus_7485#1      ---------------------