These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 862 fasta sequence [TCCTTTTTTTTTTTTTTTTTGAAGAGAAAAGGAATACGTTCTCCCTCCTCAAAGGCTCAAACCAGCAAAGATCAACACAAACTAATTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAAAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGACTCTACAACATGAGGTGATGAGGATG] [+] EMBL CB657553 [TCCTTTTTTTTTTTTTTTTTGAAGAGAAAAGGAATACGTTCTCCCTCCTCAAAGGCTCAAACCAGCAAAGATCAACACAAACTAATTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGGACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAAAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTAT ] [+] EMBL CB640107 [ TAATTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACACTATTTATACACCTCTTAACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCATCAAAAAAGAACAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAAATTTCGACCGACTTCAACAGCGCATCAGAATTTCAAAGATTCTTCAGGAGGTATAAAAAAAGGGGATGCTCAGAATTTCCACCAGAGGAAGCCCTTATTCCAACCACGGC ] [+] EMBL CB653834 [ GATACCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAGAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGACTCTACAACATGAGGTGATGAGGATG] consensusID : consensus_7488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence [CTTTTTTTTTGATCAACACAAACTAATTTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAGAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGA] [+] EMBL CB633910 [CTTTTTTTTTGATCAACACAAACTAATTTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAGAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7488#0 TCCTTTTTTTTTTTTTTTTTGAAGAGAAAAGGAATACGTTCTCCCTCCTCAAAGGCTCAA 60 consensus_7488#1 -----------------------------------------------------------C 1 consensus_7488#0 ACCAGCAAAGATCAACACAAACTAATTTTTTTTT-ACAGATAGCAATGCAATCCAATGAT 119 consensus_7488#1 TTTTTTTTTGATCAACACAAACTAATTTTTTTTTTACAGATAGCAATGCAATCCAATGAT 61 ************************* ************************* consensus_7488#0 CCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGG 179 consensus_7488#1 CCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGG 121 ************************************************************ consensus_7488#0 TACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACA 239 consensus_7488#1 TACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACA 181 ************************************************************ consensus_7488#0 AAAAAGAAAAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTAC 299 consensus_7488#1 AAAAAGAAGAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTAC 241 ******** *************************************************** consensus_7488#0 AGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTAT 359 consensus_7488#1 AGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTAT 301 ************************************************************ consensus_7488#0 AAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCG 419 consensus_7488#1 AAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCG 361 ************************************************************ consensus_7488#0 CTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTG 479 consensus_7488#1 CTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTG 421 ************************************************************ consensus_7488#0 TAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGAT 539 consensus_7488#1 TAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGAT 481 ************************************************************ consensus_7488#0 GTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCA 599 consensus_7488#1 GTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCA 541 ************************************************************ consensus_7488#0 TGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCAC 659 consensus_7488#1 TGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCAC 601 ************************************************************ consensus_7488#0 ATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCT 719 consensus_7488#1 ATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCT 661 ************************************************************ consensus_7488#0 GCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATC 779 consensus_7488#1 GCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATC 721 ************************************************************ consensus_7488#0 AGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGACTC 839 consensus_7488#1 AGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGA--- 778 ********************************************************* consensus_7488#0 TACAACATGAGGTGATGAGGATG 862 consensus_7488#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||