These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1055 fasta sequence [GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCCGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCCGCGAACAGCATCCTGTACAACCGCGGGGTGTACCCGGAGGAGAGCTTCACCAAGGTGAAGAAGTACGGCCTCACGATGCTGCTGACGCAGGACGAAGGGGTGAAGACCTTCATCGCCAACCTCAACACCCAGCTCTCAGAGTGGCTGGAGGCCGGGAAGCTGCAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCGAGGTGCTGGAGCGGTGGAACTTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTGTCATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATT-CAC-AAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA] [+] EMBL AK111976 [GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCCGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCCGCGAACAGCATCCTGTACAACCGCGGGGTGTACCCGGAGGAGAGCTTCACCAAGGTGAAGAAGTACGGCCTCACGATGCTGCTGACGCAGGACGAAGGGGTGAAGACCTTCATCGCCAACCTCAACACCCAGCTCTCAGAGTGGCTGGAGGCCGGGAAGCTGCAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCGAGGTGCTGGAGCGGTGGAACTTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTGTCATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATT CAC AAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCC ] [+] EMBL AU173518 [ AGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATT CAC AAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA] [+] EMBL AU030937 [ CGACACCAAGATTCCACAAAGGT GACACGCTCGTCTCNTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCAaaaaa ] consensusID : consensus_7494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTCCACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCGCGAACAAGCATCCTGTACAACCGCGGGGTGTACCCGGAAGAAGAGCTTTNAACAATGGTGAAGAATACGGNCTCACGATGCTGCTTGACGCAGGACGAAGGGGTGAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTGGNTTGAAGGCCTGGGAAA] [+] EMBL AU032090 [NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTCCACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCGCGAACAAGCATCCTGTACAACCGCGGGGTGTACCCGGAAGAAGAGCTTTNAACAATGGTGAAGAATACGGNCTCACGATGCTGCTTGACGCAGGACGAAGGGGTGAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTGGNTTGAAGGCCTGGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7494#0 ------------------------------------------------------------ consensus_7494#1 NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTC 60 consensus_7494#0 ----------GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCAT 50 consensus_7494#1 CACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCAT 120 ************************************************** consensus_7494#0 CCGCCGCCGCCGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGA 110 consensus_7494#1 CCG------------CCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGA 168 *** ********************************************* consensus_7494#0 TCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGC 170 consensus_7494#1 TCAGGAGATGGCGTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGC 228 *********************** ************************************ consensus_7494#0 CATCGTCAGCGAGTTCTTCGGCTACGCCGCGAACA-GCATCCTGTACAACCGCGGGGTGT 229 consensus_7494#1 CATCGTCAGCGAGTTCTTCGGCTACGC-GCGAACAAGCATCCTGTACAACCGCGGGGTGT 287 *************************** ******* ************************ consensus_7494#0 ACCCGGAGGA-GAGCTTCA--CCAAGGTGAAGAAGTACGGCCTCACGATGCTGCT-GACG 285 consensus_7494#1 ACCCGGAAGAAGAGCTTTNAACAATGGTGAAGAA-TACGGNCTCACGATGCTGCTTGACG 346 ******* ** ****** * * ********* ***** ************** **** consensus_7494#0 CAGGACGAAGGGGTGAA-GACCTTCA-TCGCCAACCTCAACA-CCCAGCTCTCA-GAGTG 341 consensus_7494#1 CAGGACGAAGGGGTGAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTG 406 ***************** ****** * ******** ****** ********* * ***** consensus_7494#0 GCT-GGAGGCCGGGAAGCTGCAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCG 400 consensus_7494#1 GNTTGAAGGCCTGGGAAA------------------------------------------ 424 * * * ***** ** * consensus_7494#0 AGGTGCTGGAGCGGTGGAACTTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTG 460 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TCATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGG 520 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGG 580 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 CGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCA 640 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATTCACAAGGTGGACA 700 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 CGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTG 760 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 GAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTA 820 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 GCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGA 880 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 ACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGAC 940 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAA 1000 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 GTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA 1055 consensus_7494#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||