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Oryza sativa
cluster # 7494 cluster # 7494       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7494#0 length = 1055 sequences # 3  
consensus_7494#1 length = 424 sequences # 1  

consensusID : consensus_7494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1055
fasta sequence
                              [GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCCGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCCGCGAACAGCATCCTGTACAACCGCGGGGTGTACCCGGAGGAGAGCTTCACCAAGGTGAAGAAGTACGGCCTCACGATGCTGCTGACGCAGGACGAAGGGGTGAAGACCTTCATCGCCAACCTCAACACCCAGCTCTCAGAGTGGCTGGAGGCCGGGAAGCTGCAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCGAGGTGCTGGAGCGGTGGAACTTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTGTCATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATT-CAC-AAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA]

[+] EMBL AK111976             [GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCCGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCCGCGAACAGCATCCTGTACAACCGCGGGGTGTACCCGGAGGAGAGCTTCACCAAGGTGAAGAAGTACGGCCTCACGATGCTGCTGACGCAGGACGAAGGGGTGAAGACCTTCATCGCCAACCTCAACACCCAGCTCTCAGAGTGGCTGGAGGCCGGGAAGCTGCAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCGAGGTGCTGGAGCGGTGGAACTTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTGTCATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATT CAC AAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCC                                                                                 ]
[+] EMBL AU173518             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATT CAC AAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA]
[+] EMBL AU030937             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGACACCAAGATTCCACAAAGGT GACACGCTCGTCTCNTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCAaaaaa             ]


>consensus_7494#0 GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGC CGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATG GCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGC GAGTTCTTCGGCTACGCCGCGAACAGCATCCTGTACAACCGCGGGGTGTACCCGGAGGAG AGCTTCACCAAGGTGAAGAAGTACGGCCTCACGATGCTGCTGACGCAGGACGAAGGGGTG AAGACCTTCATCGCCAACCTCAACACCCAGCTCTCAGAGTGGCTGGAGGCCGGGAAGCTG CAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCGAGGTGCTGGAGCGGTGGAAC TTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTGTCATCAAGGAGAAGAGCGAC AAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGGTCGCCTCCTGCATCACCTAC CTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGGCGTACACCGACATGGACGTC GCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTG AAGCTGCATTCCTTCGACACCAAGATTCACAAGGTGGACACGCTCGTCTCCTACAAGGTC GACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCC CCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTT GTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAA TCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCA TGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGC ATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA



consensusID : consensus_7494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence
                              [NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTCCACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCGCGAACAAGCATCCTGTACAACCGCGGGGTGTACCCGGAAGAAGAGCTTTNAACAATGGTGAAGAATACGGNCTCACGATGCTGCTTGACGCAGGACGAAGGGGTGAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTGGNTTGAAGGCCTGGGAAA]

[+] EMBL AU032090             [NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTCCACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCGCGAACAAGCATCCTGTACAACCGCGGGGTGTACCCGGAAGAAGAGCTTTNAACAATGGTGAAGAATACGGNCTCACGATGCTGCTTGACGCAGGACGAAGGGGTGAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTGGNTTGAAGGCCTGGGAAA]


>consensus_7494#1 NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTC CACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCAT CCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGC GTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGA GTTCTTCGGCTACGCGCGAACAAGCATCCTGTACAACCGCGGGGTGTACCCGGAAGAAGA GCTTTNAACAATGGTGAAGAATACGGNCTCACGATGCTGCTTGACGCAGGACGAAGGGGT GAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTGGNTTGAAGGCCTGG GAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7494#0      ------------------------------------------------------------
consensus_7494#1      NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTC 60
                                                                                  

consensus_7494#0      ----------GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCAT 50
consensus_7494#1      CACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCAT 120
                                **************************************************

consensus_7494#0      CCGCCGCCGCCGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGA 110
consensus_7494#1      CCG------------CCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGA 168
                      ***            *********************************************

consensus_7494#0      TCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGC 170
consensus_7494#1      TCAGGAGATGGCGTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGC 228
                      *********************** ************************************

consensus_7494#0      CATCGTCAGCGAGTTCTTCGGCTACGCCGCGAACA-GCATCCTGTACAACCGCGGGGTGT 229
consensus_7494#1      CATCGTCAGCGAGTTCTTCGGCTACGC-GCGAACAAGCATCCTGTACAACCGCGGGGTGT 287
                      *************************** ******* ************************

consensus_7494#0      ACCCGGAGGA-GAGCTTCA--CCAAGGTGAAGAAGTACGGCCTCACGATGCTGCT-GACG 285
consensus_7494#1      ACCCGGAAGAAGAGCTTTNAACAATGGTGAAGAA-TACGGNCTCACGATGCTGCTTGACG 346
                      ******* ** ******    * * ********* ***** ************** ****

consensus_7494#0      CAGGACGAAGGGGTGAA-GACCTTCA-TCGCCAACCTCAACA-CCCAGCTCTCA-GAGTG 341
consensus_7494#1      CAGGACGAAGGGGTGAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTG 406
                      ***************** ****** * ******** ****** ********* * *****

consensus_7494#0      GCT-GGAGGCCGGGAAGCTGCAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCG 400
consensus_7494#1      GNTTGAAGGCCTGGGAAA------------------------------------------ 424
                      * * * ***** ** *                                            

consensus_7494#0      AGGTGCTGGAGCGGTGGAACTTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTG 460
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      TCATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGG 520
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      TCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGG 580
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      CGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCA 640
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      TCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATTCACAAGGTGGACA 700
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      CGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTG 760
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      GAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTA 820
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      GCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGA 880
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      ACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGAC 940
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      TGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAA 1000
consensus_7494#1      ------------------------------------------------------------
                                                                                  

consensus_7494#0      GTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA 1055
consensus_7494#1      -------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)