|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1796 fasta sequence
[AGAGAAAGGGAAAAAGGGAAAAGAAGAAGCAGCAGCAGCTCAAGACTCAACTCAAGTAGAAGAAGAAGAATAGGGAGAGAGAGAGACCATCGATCGATCTGTCTCTTTTGCCTGCTCTGCTCCTCTTGTTTTCTTTTGCCTTGTTTGCCTCCTCTGCAACGAACGCAGACCTAGCAGCATGCATATTCAGTCAAGAGTTTAATTGCAAGAAGAAGAAGAAGAAGAAGAAATCTACTACTAGTCCAGTTGCAGTTGCAGAGGCATATTGTGGTTGGATAATGGAGACGGTGTCGGTGTGCGGGCTCCACCCGGGCGTGGCGGTGACGGGGTTCTGCCCGGCCTGCCTCCGCGACCGCCTCGCCGGCCTCCACCCGCCATCCGACCTCCGCCGCTGCAAGTCCTTCTCCTACTACGCCCGCTCCTCATCCTACTTGGAGCCGCACCCGCAGCAGGATGCTCTAGTCCTGCCCGATGCTGCTGATGCTCCAACCAACACCAAGCTCGCCTTGGGCTCCCTGGGCAAGCGCTGGCAGGAATGGCGTCGCAAGTCCAAGCTCAAGCACCACCACCCGCCCCCCGCCACCGCCACCGACCCCGCGCTGCTGGCCCGCCGCTCCTGCGACGCTTTCTCCACCCGCACCATGCTGGACGAGCCCCGCGCGTCCTACCATCCCACGCTCTTCGTTCCACGCTCCGACGACCAGATCCCCGTGGAGGAGGAGGAGCGAGCTTACGTGCCCGGCGGCTCCGCCCAGACAAGGGACTACTACCTCGACTCCTCCAGCTCCAGCAGGAGGCGCCGGAGCGTCGACCGCAAGTCCTCCTCCGACGCCGGCGACCAAATCCCCAGGATGGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGTACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGGCCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCATCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTGCGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCCAGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCTCATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATTTCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCAGGTATCAGTTTCACAAGGATGATTACTCCAACTCCATTGCCAACAATTCTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCACCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTATTAATCTCCTCCAACCACGACATATGCATGTTTCTTCTTTCATCCATTCAGTCCCAGACTCAAGCCTGTCTCATAATCTCATATGCTTCAAATCAGCCATGTGTTGGATTGAAAAGAAAAACGCTTTTCCCTTCATCAGTTTGTAAGGCTCCTTTTCTTTCATATACTGATATACAACTATGCAATGAAGCTCATG]
[+] EMBL AK105585 [AGAGAAAGGGAAAAAGGGAAAAGAAGAAGCAGCAGCAGCTCAAGACTCAACTCAAGTAGAAGAAGAAGAATAGGGAGAGAGAGAGACCATCGATCGATCTGTCTCTTTTGCCTGCTCTGCTCCTCTTGTTTTCTTTTGCCTTGTTTGCCTCCTCTGCAACGAACGCAGACCTAGCAGCATGCATATTCAGTCAAGAGTTTAATTGCAAGAAGAAGAAGAAGAAGAAGAAATCTACTACTAGTCCAGTTGCAGTTGCAGAGGCATATTGTGGTTGGATAATGGAGACGGTGTCGGTGTGCGGGCTCCACCCGGGCGTGGCGGTGACGGGGTTCTGCCCGGCCTGCCTCCGCGACCGCCTCGCCGGCCTCCACCCGCCATCCGACCTCCGCCGCTGCAAGTCCTTCTCCTACTACGCCCGCTCCTCATCCTACTTGGAGCCGCACCCGCAGCAGGATGCTCTAGTCCTGCCCGATGCTGCTGATGCTCCAACCAACACCAAGCTCGCCTTGGGCTCCCTGGGCAAGCGCTGGCAGGAATGGCGTCGCAAGTCCAAGCTCAAGCACCACCACCCGCCCCCCGCCACCGCCACCGACCCCGCGCTGCTGGCCCGCCGCTCCTGCGACGCTTTCTCCACCCGCACCATGCTGGACGAGCCCCGCGCGTCCTACCATCCCACGCTCTTCGTTCCACGCTCCGACGACCAGATCCCCGTGGAGGAGGAGGAGCGAGCTTACGTGCCCGGCGGCTCCGCCCAGACAAGGGACTACTACCTCGACTCCTCCAGCTCCAGCAGGAGGCGCCGGAGCGTCGACCGCAAGTCCTCCTCCGACGCCGGCGACCAAATCCCCAGGATGGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGTACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGGCCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCATCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTGCGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCCAGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCTCATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATTTCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCGGGTATCAGTTTCACAAGGATGATTACTCCAACTCCATTGCCAACAATTCTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCACCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACCCTTGGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTATTAATCTCCTCCAACCACGACATATGCATGTTTCTTCTTTCATCCATTCAGTCCCAGACTCAAGCCTGTCTCATAATCTCATATGCTTCAAATCAGCCATGTGTTGGATTGAAAAGAAAAACGCTTTTCCCTTCATCAGTTTGTAAGGCTCCTTTTCTTTCATATACTGATATACAACTATGCAATGAAGCTCATG]
[+] EMBL AK072181 [ CGATCGATCTGTCTCTTTTGCCTGCTCTGCTCCTCTTGTTTTCTTTTGCCTTGTTTGCCTCCTCTGCAACGAACGCAGACCTAGCAGCATGCATATTCAGTCAAGAGTTTAATTGCAAGAAGAAGAAGAAGAAGAAGAAATCTACTACTAGTCCAGTTGCAGTTGCAGAGGCATATTGTGGTTGGATAATGGAGACGGTGTCGGTGTGCGGGCTCCACCCGGGCGTGGCGGTGACGGGGTTCTGCCCGGCCTGCCTCCGCGACCGCCTCGCCGGCCTCCACCCGCCATCCGACCTCCGCCGCTGCAAGTCCTTCTCCTACTACGCCCGCTCCTCATCCTACTTGGAGCCGCACCCGCAGCAGGATGCTCTAGTCCTGCCCGATGCTGCTGATGCTCCAACCAACACCAAGCTCGCCTTGGGCTCCCTGGGCAAGCGCTGGCAGGAATGGCGTCGCAAGTCCAAGCTCAAGCACCACCACCCGCCCCCCGCCACCGCCACCGACCCCGCGCTGCTGGCCCGCCGCTCCTGCGACGCTTTCTCCACCCGCACCATGCTGGACGAGCCCCGCGCGTCCTACCATCCCACGCTCTTCGTTCCACGCTCCGACGACCAGATCCCCGTGGAGGAGGAGGAGCGAGCTTACGTGCCCGGCGGCTCCGCCCAGACAAGGGACTACTACCTCGACTCCTCCAGCTCCAGCAGGAGGCGCCGGAGCGTCGACCGCAAGTCCTCCTCCGACGCCGGCGACCAAATCCCCAGGATGGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGTACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGGCCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCATCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTGCGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCCAGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCTCATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATTTCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCAGGTATCAGTTTCACAAGGATGATTACTCCAACTCCATTGCCAACAATTCTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCACCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTATTAATCTCCTCCAACCACGACATATGCATGTTTCTTCTTTCATCCATTCAGTCCCAGACTCAAGCCTGTCTCATAATCTCATATGCTTCAAATCAGCCATG ]
[-] EMBL CB652562 [ GGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGTACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGGCCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCATCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTGCGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCCAGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCTCATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATTTCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCAGGTATCAGTTTCACAAGGATGATTACTCCAACTCCATTGCCAACAATTTTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCACCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTGTTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCAAAGGGTACGGGTGCATTATCCCTTc ]
consensusID : consensus_7502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence
[TCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU083403 [TCTACTACTACTGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7502#0 AGAGAAAGGGAAAAAGGGAAAAGAAGAAGCAGCAGCAGCTCAAGACTCAACTCAAGTAGA 60
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 AGAAGAAGAATAGGGAGAGAGAGAGACCATCGATCGATCTGTCTCTTTTGCCTGCTCTGC 120
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 TCCTCTTGTTTTCTTTTGCCTTGTTTGCCTCCTCTGCAACGAACGCAGACCTAGCAGCAT 180
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 GCATATTCAGTCAAGAGTTTAATTGCAAGAAGAAGAAGAAGAAGAAGAAATCTACTACTA 240
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 GTCCAGTTGCAGTTGCAGAGGCATATTGTGGTTGGATAATGGAGACGGTGTCGGTGTGCG 300
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 GGCTCCACCCGGGCGTGGCGGTGACGGGGTTCTGCCCGGCCTGCCTCCGCGACCGCCTCG 360
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 CCGGCCTCCACCCGCCATCCGACCTCCGCCGCTGCAAGTCCTTCTCCTACTACGCCCGCT 420
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 CCTCATCCTACTTGGAGCCGCACCCGCAGCAGGATGCTCTAGTCCTGCCCGATGCTGCTG 480
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 ATGCTCCAACCAACACCAAGCTCGCCTTGGGCTCCCTGGGCAAGCGCTGGCAGGAATGGC 540
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 GTCGCAAGTCCAAGCTCAAGCACCACCACCCGCCCCCCGCCACCGCCACCGACCCCGCGC 600
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 TGCTGGCCCGCCGCTCCTGCGACGCTTTCTCCACCCGCACCATGCTGGACGAGCCCCGCG 660
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 CGTCCTACCATCCCACGCTCTTCGTTCCACGCTCCGACGACCAGATCCCCGTGGAGGAGG 720
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 AGGAGCGAGCTTACGTGCCCGGCGGCTCCGCCCAGACAAGGGACTACTACCTCGACTCCT 780
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 CCAGCTCCAGCAGGAGGCGCCGGAGCGTCGACCGCAAGTCCTCCTCCGACGCCGGCGACC 840
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 AAATCCCCAGGATGGTGGCCGCGGCTGCCAATGCCAGGGTTTCACCGGCCACAGAGCTGT 900
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 ACCACCAGCCCCACACGTTCCACTATCACCAGCCAAGCTTCGAGCCGCCGCCATTATTGG 960
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 CCCGGGAACGACAAGAGGCAAAGAGCAAGCCTAAGAACAAGGGGATCAAGGGGTGGAGCA 1020
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 TCTGGGGCCTCCTGCACAAGAAGAGCAGCACCACCAACAGTGTGGGTGCCACTGCCAGTG 1080
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 CGTTCGCCGGCGAGGCACGGGCGGCGCCACCGGAGCTCCGGGCAAGGGGTTACGACGGCC 1140
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 AGATGCTCCGGTGCAACAGCAGCGTCAGCGCAAGAAGCTCATTCAGTGGAATTGGAAGCT 1200
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 CATTCAATGGCGGCAGGTTGGGGATGAGGAGGGCAGATGAAGTTTTGCTTGAGAGGAATT 1260
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 TCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCAGGTATCAGTTTCACAAGGATGATTACT 1320
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 CCAACTCCATTGCCAACAATTCTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCA 1380
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 CCTTGCCGAGGACCTCACTTGGACTCTACTACTACTGAACTCAATTTTATTATTATTACC 1440
consensus_7502#1 ------------------------TCTACTACTACTGAACTCAATTTTATTATTATTACC 36
************************************
consensus_7502#0 CTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTAT 1500
consensus_7502#1 CTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAGCTTAT 96
************************************************************
consensus_7502#0 ATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCAT 1560
consensus_7502#1 ATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCAT 156
************************************************************
consensus_7502#0 TATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTATTAATCTCCTCCAACCACGA 1620
consensus_7502#1 TATACCTTACTTAATTTACACTAGTACACCCTTTTGTTTAAAAAAAAAAAAAAAAAAAAA 216
**************************************** ** ** * *
consensus_7502#0 CATATGCATGTTTCTTCTTTCATCCATTCAGTCCCAGACTCAAGCCTGTCTCATAATCTC 1680
consensus_7502#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 256
* * * * * * * *
consensus_7502#0 ATATGCTTCAAATCAGCCATGTGTTGGATTGAAAAGAAAAACGCTTTTCCCTTCATCAGT 1740
consensus_7502#1 ------------------------------------------------------------
consensus_7502#0 TTGTAAGGCTCCTTTTCTTTCATATACTGATATACAACTATGCAATGAAGCTCATG 1796
consensus_7502#1 --------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||