cluster # 7505

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Oryza sativa
cluster # 7505 cluster # 7505 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7505#0 length = 830 sequences # 3

consensus_7505#1 length = 391 sequences # 1

consensusID : consensus_7505#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 830
fasta sequence

                              [ACGCCGCGCTCGATCTCTCGCCGCCATGGCCCGCCTCGCCGTCGCCGCCGCACTCCTCCTCGTCGCCCTCTGCCGCGTCGTCCACGGCGAGGCCGATCAGGAGACCGCCCCCGCCTACGCCAACCGTGAAGCCTACGTCGAGCACAATGGTGGTGACGCCGCCGGCACGTCCGTCGCCATCGTCCCGCCCTACCTCGACGCCGCCGCCGCCGCCCGTGACGAGCCCGCGGCGGCGGCGGCGAGCCCCGAGGGGCCTGTGATCCCGGTCGACGACGACGCGGCGGACCAGCAGGGCTTCCTCCGCTTCCCCTGCCGCTACCACTGCCGCTACCGCCACCACATGCGCCACGGCGGCCATCGCCATGGGGAGGGATTCCATGGCAAGGAGGAGAAGCAGCAGCTGGTGTTCGAGATGCCAGTCGAGCCGGCGACCCGCGGCGAGGAGCGCAGGGAGGAGGAGGAGGGGGTGGTTCTCCCCGTCGCGGAGCCAGATCCGGACTCGCGCCGCCAGTATGCCGCCGTAGCCGCCGCCGAGGAGGAAGACGAGGATGAGATGGCGAGGCTCCACCACGGCCGCCGCTCCCACCACCACCATCATCGCCACCACCATCATCACCACGACGAGAACGAGGAGGACGAGCACGAGCAGGCCGACGAGGCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCGCCACCACCACCACCACCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCACCACGAGGAGGAGGAGGAGTCCGAGATGAGGACCAAGCGNTTNCACCACCACC]

[+] EMBL AK101438             [ACGCCGCGCTCGATCTCTCGCCGCCATGGCCCGCCTCGCCGTCGCCGCCGCACTCCTCCTCGTCGCCCTCTGCCGCGTCGTCCACGGCGAGGCCGATCAGGAGACCGCCCCCGCCTACGCCAACCGTGAAGCCTACGTCGAGCACAATGGTGGTGACGCCGCCGGCACGTCCGTCGCCATCGTCCCGCCCTACCTCGACGCCGCCGCCGCCGCCCGTGACGAGCCCGCGGCGGCGGCGGCGAGCCCCGAGGGGCCTGTGATCCCGGTCGACGACGACGCGGCGGACCAGCAGGGCTTCCTCCGCTTCCCCTGCCGCTACCACTGCCGCTACCGCCACCACATGCGCCACGGCGGCCATCGCCATGGGGAGGGATTCCATGGCAAGGAGGAGAAGCAGCAGCTGGTGTTCGAGATGCCAGTCGAGCCGGCGACCCGCGGCGAGGAGCGCAGGGAGGAGGAGGAGGGGGTGGTTCTCCCCGTCGCGGAGCCAGATCCGGACTCGCGCCGCCAGTATGCCGCCGTAGCCGCCGCCGAGGAGGAAGACGAGGATGAGATGGCGAGGCTCCACCACGGCCGCCGCTCCCACCACCACCATCATCGCCACCACCATCATCACCACGACGAGAACGAGGAGGACGAGCACGAGCAGGCCGACGAGGCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCGCCACCACCACCACCACCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCACCACGAGGAGGAGGAGGAGTCCGAGA                           ]
[+] EMBL AK103464             [ACGCCGCGCTCGATCTCTCGCCGCCATGGCCCGCCTCGCCGTCGCCGCCGCACTCCTCCTCGTCGCCCTCTGCCGCGTCGTCCACGGCGAGGCCGATCAGGAGACCGCCCCCGCCTACGCCAACCGTGAAGCCTACGTCGAGCACAATGGTGGTGACGCCGCCGGCACGTCCGTCGCCATCGTCCCGCCCTACCTCGACGCCGCCGCCGCCGCCCGTGACGAGCCCGCGGCGGCGGCGGCGAGCCCCGAGGGGCCTGTGATCCCGGTCGACGACGACGCGGCGGACCAGCAGGGCTTCCTCCGCTTCCCCTGCCGCTACCACTGCCGCTACCGCCACCACATGCGCCACGGCGGCCATCGCCATGGGGAGGGATTCCATGGCAAGGAGGAGAAGCAGCAGCTGGTGTTCGAGATGCCAGTCGAGCCGGCGACCCGCGGCGAGGAGCGCAGGGAGGAGGAGGAGGGGGTGGTTCTCCCCGTCGCGGAGCCAGATCCGGACTCGCGCCGCCAGTATGCCGCCGTAGCCGCCGCCGAGGAGGAAGACGAGGATGAGATGGCGAGGCTCCACAACGGCCGCCGCTCCCACCACCACCATCATCGCCACCACCATCATCACCACGACGAGAACGAGGAGGACGAGCACGAGCAGGCCGACGAGGCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCGCCACCACCACCACCACCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCACCACGAGGAGGAGGAGGAGTCCGAGA                           ]
[+] EMBL OSR25551A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAGAACGAGGAGGACGAGCACGAGCAGGCCGACGAGGCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCGCCACCACCACCACCACCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCACCACGAGGAGGAGGAGGAGTCCGAGATGAGGACCAAGCGNTTNCACCACCACC]




>consensus_7505#0
ACGCCGCGCTCGATCTCTCGCCGCCATGGCCCGCCTCGCCGTCGCCGCCGCACTCCTCCT
CGTCGCCCTCTGCCGCGTCGTCCACGGCGAGGCCGATCAGGAGACCGCCCCCGCCTACGC
CAACCGTGAAGCCTACGTCGAGCACAATGGTGGTGACGCCGCCGGCACGTCCGTCGCCAT
CGTCCCGCCCTACCTCGACGCCGCCGCCGCCGCCCGTGACGAGCCCGCGGCGGCGGCGGC
GAGCCCCGAGGGGCCTGTGATCCCGGTCGACGACGACGCGGCGGACCAGCAGGGCTTCCT
CCGCTTCCCCTGCCGCTACCACTGCCGCTACCGCCACCACATGCGCCACGGCGGCCATCG
CCATGGGGAGGGATTCCATGGCAAGGAGGAGAAGCAGCAGCTGGTGTTCGAGATGCCAGT
CGAGCCGGCGACCCGCGGCGAGGAGCGCAGGGAGGAGGAGGAGGGGGTGGTTCTCCCCGT
CGCGGAGCCAGATCCGGACTCGCGCCGCCAGTATGCCGCCGTAGCCGCCGCCGAGGAGGA
AGACGAGGATGAGATGGCGAGGCTCCACCACGGCCGCCGCTCCCACCACCACCATCATCG
CCACCACCATCATCACCACGACGAGAACGAGGAGGACGAGCACGAGCAGGCCGACGAGGC
TTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCGCCACCACCACCACCACCA
CGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCACCA
CGAGGAGGAGGAGGAGTCCGAGATGAGGACCAAGCGNTTNCACCACCACC

consensusID : consensus_7505#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TCATTCTTTGCTACTCCGCATTGTTATTNANTCANTCTTNTCTTANTCTCTTATTATGTAATATTATAGNTAGGCTCCNTNGTATATAATATACGGTNCTATATGTCCTCACCAGTCTACATCTACTACTATATCACACTATCAACCCCTCACCAACGCACGCCCTCTATCCCACATCCTCAACAGCCACCACCTTCGAAACCGTAGCGAACCACACGTACCTTTCGTCGAACAGACTCTCAACGGCTCTACCTACGGTGTCGCGGTTGTCAGGGTTCACACCCCCCGTCCCCCCCCCCCCCCACCACGAAGACGCCCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCCCCACGAGGAGGAGGAGGAGTCCGAGAT]

[-] EMBL CA757651             [TCATTCTTTGCTACTCCGCATTGTTATTNANTCANTCTTNTCTTANTCTCTTATTATGTAATATTATAGNTAGGCTCCNTNGTATATAATATACGGTNCTATATGTCCTCACCAGTCTACATCTACTACTATATCACACTATCAACCCCTCACCAACGCACGCCCTCTATCCCACATCCTCAACAGCCACCACCTTCGAAACCGTAGCGAACCACACGTACCTTTCGTCGAACAGACTCTCAACGGCTCTACCTACGGTGTCGCGGTTGTCAGGGTTCACACCCCCCGTCCCCCCCCCCCCCCACCACGAAGACGCCCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCCCCACGAGGAGGAGGAGGAGTCCGAGAT]




>consensus_7505#1
TCATTCTTTGCTACTCCGCATTGTTATTNANTCANTCTTNTCTTANTCTCTTATTATGTA
ATATTATAGNTAGGCTCCNTNGTATATAATATACGGTNCTATATGTCCTCACCAGTCTAC
ATCTACTACTATATCACACTATCAACCCCTCACCAACGCACGCCCTCTATCCCACATCCT
CAACAGCCACCACCTTCGAAACCGTAGCGAACCACACGTACCTTTCGTCGAACAGACTCT
CAACGGCTCTACCTACGGTGTCGCGGTTGTCAGGGTTCACACCCCCCGTCCCCCCCCCCC
CCCACCACGAAGACGCCCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCC
ACCCCCACGAGGAGGAGGAGGAGTCCGAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7505#0      ACGCCGCGCTCGATCTCTCGCCGCCATGGCCCGCCTCGCCGTCGCCGCCGCACTCCTCCT 60
consensus_7505#1      ------------------------------------------------------------
                                                                                  

consensus_7505#0      CGTCGCCCTCTGCCGCGTCGTCCACGGCGAGGCCGATCAGGAGACCGCCCCCGCCTACGC 120
consensus_7505#1      ------------------------------------------------------------
                                                                                  

consensus_7505#0      CAACCGTGAAGCCTACGTCGAGCACAATGGTGGTGACGCCGCCGGCACGTCCGTCGCCAT 180
consensus_7505#1      ------------------------------------------------------------
                                                                                  

consensus_7505#0      CGTCCCGCCCTACCTCGACGCCGCCGCCGCCGCCCGTGACGAGCCCGCGGCGGCGGCGGC 240
consensus_7505#1      ------------------------------------------------------------
                                                                                  

consensus_7505#0      GAGCCCCGAGGGGCCTGTGATCCCGGTCGACGACGACGCGGCGGACCAGCAGGGCTTCCT 300
consensus_7505#1      ------------------------------------------------------------
                                                                                  

consensus_7505#0      CCGCTTCCCCTGCCGCTACCACTGCCGCTACCGCCACCACATGCGCCACGGCGGCCATCG 360
consensus_7505#1      ------------------------------------------------------------
                                                                                  

consensus_7505#0      CCATGGGGAGGGATTCCATGGCAAGGAGGAGAAGCAGCAGCTGGTGTTCGAGATGCCAGT 420
consensus_7505#1      ---------------------------------TCATTCTTTGCTACTCCGCATTGTTAT 27
                                                        **     ** *  **   **     *

consensus_7505#0      CGAGCCGGCGACCCGCGGCGAGGAGCGCAGGGAGGAGGAGGAGGGGGTGGTTCTCCCCGT 480
consensus_7505#1      TNANTCA---NTCTTNTCTTANTCTCTTATTATGTAATATTATAGNTAGGCTCCNTNGTA 84
                        *  *      *       *    *  *    * *  *  *  *   ** **       

consensus_7505#0      CGCGGAGCCAGATCCGGACTCGCGCCGCCAGTATGCCGCCGTAGCCGCCGCCGAGGAGGA 540
consensus_7505#1      TATAATATACGGTNCTATATGTCCTCACCAGT------CTACATCTACT----------- 127
                                * * *    *  *  * *****      *   * *  *            

consensus_7505#0      AGACGAGGATGAGATGGCGAGGCTCCACCACGGCCGCCGCTCCCACCACCACCATCATC- 599
consensus_7505#1      --ACTATATCACACTATCAACCCCTCACCAACGCACGCCCTCTATCCCACATCCTCAACA 185
                        ** *        *  * *  *  *****  **   * ***   **  ** * *** * 

consensus_7505#0      GCCACCACCATCATCACCACGACGAGAACGAGGAGGACGAGCACGAGCAGGCCGACGA-G 658
consensus_7505#1      GCCACCACCTTCGAAACCGTAGCGAACCACACGTACCTTTCGTCGAACAGACTCTCAACG 245
                      ********* **   ***    ***     * *          *** *** *   * * *

consensus_7505#0      GCTTCGCCCGCCGTGGAGCGGTTGATCAGCTTCCACCGCCGCCG-CCACCACCACCACCA 717
consensus_7505#1      GCTCTACCTACGGTGTCGCGGTTG-TCAGGGTTCACACCCCCCGTCCCCCCCCCCCCCCA 304
                      ***   **  * ***  ******* ****  * ***  ** *** ** ** ** ** ***

consensus_7505#0      CCACGAAGACGACCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCA 777
consensus_7505#1      CCACGAAGACGCCCACGAGCAGCGCGAGGAGGGTGCGCCCATGAAGCGGTTCCGCCACCC 364
                      *********** *********************************************** 

consensus_7505#0      CCACGAGGAGGAGGAGGAGTCCGAGATGAGGACCAAGCGNTTNCACCACCACC 830
consensus_7505#1      CCACGAGGAGGAGGAGGAGTCCGAGAT-------------------------- 391
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