These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 864 fasta sequence [ACCAGACGACAACACACACACAAAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCCTCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAA] [+] EMBL AK072571 [ACCAGACGACAACACACACACAAAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCCTCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTATCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAA] [+] EMBL AY344490 [ AGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAA] [+] EMBL CB663982 [ GAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTACGAGGGATAAAGCTCTTCTCATGC ] consensusID : consensus_7513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence [AAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCCTCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAAC] [+] EMBL CB667903 [AAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCCTCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7513#0 ACCAGACGACAACACACACACAAAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCC 60 consensus_7513#1 ----------------------AAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCC 38 ************************************** consensus_7513#0 TCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAAT 120 consensus_7513#1 TCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAAT 98 ************************************************************ consensus_7513#0 CTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCC 180 consensus_7513#1 CTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCC 158 ************************************************************ consensus_7513#0 TCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGT 240 consensus_7513#1 TCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGT 218 ************************************************************ consensus_7513#0 CTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGT 300 consensus_7513#1 CTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGT 278 ************************************************************ consensus_7513#0 GGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTAT 360 consensus_7513#1 GGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTAT 338 ************************************************************ consensus_7513#0 CTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGA 420 consensus_7513#1 CTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGA 398 ************************************************************ consensus_7513#0 CCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTA 480 consensus_7513#1 CCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTA 458 ************************************************************ consensus_7513#0 TGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGG 540 consensus_7513#1 T-------------TTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGG 505 * ********************************************** consensus_7513#0 CCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAG 600 consensus_7513#1 CCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAG 565 ************************************************************ consensus_7513#0 CGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAA 660 consensus_7513#1 CGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAA 625 ************************************************************ consensus_7513#0 ATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCA 720 consensus_7513#1 ATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCA 685 ************************************************************ consensus_7513#0 GCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAAT 780 consensus_7513#1 GCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAAT 745 ************************************************************ consensus_7513#0 TGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGT 840 consensus_7513#1 TGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGT 805 ************************************************************ consensus_7513#0 TGTCCAGAATCCTAGTTTTCTCAA- 864 consensus_7513#1 TGTCCAGAATCCTAGTTTTCTCAAC 830 ************************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||