cluster # 752

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Oryza sativa
cluster # 752 cluster # 752 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_752#0 length = 1018 sequences # 1

consensus_752#1 length = 684 sequences # 1

consensusID : consensus_752#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1018
fasta sequence

                              [CATATTCAGTTGGTTATATGGTCTGGTCGGTTCATGCGCACATCTTGTGATGGTAAATTCATCGTGGACAAGATCCCATATTGAAAATATTTGGAGGATACCAGAGCGTACTAGGAGGGTATACCCTCCATGTGATACTTCTGCCCTGCAGATGCTTCCACTGGAAAGATCAACTACACCTCCTATTCTTATATCAGTTGCACAGTTTCGGCCAGAAAAGGCCCATGGACTTCAGCTTGAGGCATTTGCAATTGCTCTTAAGAAGCTAAGTCCAGAATTTCCTAAGCCAAAGCTTCAATTTGTTGGAAGCTGTCGGAATAAAGAGGATCTGGAAAGATTGCAAAAGCTTAAAGACAGATCCACTGAACTACACATAGATGAGCTTGTGGAGTTCCACAAGGATATCTCTTACAGGGACTTGGTACAGCTTCTAGGTGGTGCTGTTGCTGGGCTCCATTCAATGACAGATGAGCATTTTGGGATAAGTGTTGTTGAATACATGGCTGCTGGTGCTATTCCAATTGCCCATAAATCGGCAGGACCAATGATGGACATTGTGCTAGATGAGGATGGCCAACAGACAGGATTTCTAGCCTCCGAGAAGGAAGAATATGCCGAGGCAATTGTCAAGGTCTTGCGGATGCCGGAGGCAGAGAGGCATGAGATGGCAACAGCAGCACGAAAACGCGCTCAAAGATTTTCTGAGCATAGGTTCCATGAAGATTTCACCGATGCAGTTCGCCCAATTTTGTCAGCAACATGAGCTTGACAAGCTAAGGAGTCTCCTCTTAACTGTCTGAAACACTAACAAGTTTCACATGATATGGTGACTATGAAGCTAACTGGCCAATTACTGGGTCTTGCATGCGGCATCCGTTTAAAGTGCGAGTTTTGCTTGAGTTTCCTTTTCTCTGTATTACTTACATAGAGGTGCATCATGTACAGTACAGACTACAAACCACAAAAATGATAGATTGATGACTTTGTTTGGCTTTATCTACCGTTTGGATTTGCTTAG]

[+] EMBL AK110753             [CATATTCAGTTGGTTATATGGTCTGGTCGGTTCATGCGCACATCTTGTGATGGTAAATTCATCGTGGACAAGATCCCATATTGAAAATATTTGGAGGATACCAGAGCGTACTAGGAGGGTATACCCTCCATGTGATACTTCTGCCCTGCAGATGCTTCCACTGGAAAGATCAACTACACCTCCTATTCTTATATCAGTTGCACAGTTTCGGCCAGAAAAGGCCCATGGACTTCAGCTTGAGGCATTTGCAATTGCTCTTAAGAAGCTAAGTCCAGAATTTCCTAAGCCAAAGCTTCAATTTGTTGGAAGCTGTCGGAATAAAGAGGATCTGGAAAGATTGCAAAAGCTTAAAGACAGATCCACTGAACTACACATAGATGAGCTTGTGGAGTTCCACAAGGATATCTCTTACAGGGACTTGGTACAGCTTCTAGGTGGTGCTGTTGCTGGGCTCCATTCAATGACAGATGAGCATTTTGGGATAAGTGTTGTTGAATACATGGCTGCTGGTGCTATTCCAATTGCCCATAAATCGGCAGGACCAATGATGGACATTGTGCTAGATGAGGATGGCCAACAGACAGGATTTCTAGCCTCCGAGAAGGAAGAATATGCCGAGGCAATTGTCAAGGTCTTGCGGATGCCGGAGGCAGAGAGGCATGAGATGGCAACAGCAGCACGAAAACGCGCTCAAAGATTTTCTGAGCATAGGTTCCATGAAGATTTCACCGATGCAGTTCGCCCAATTTTGTCAGCAACATGAGCTTGACAAGCTAAGGAGTCTCCTCTTAACTGTCTGAAACACTAACAAGTTTCACATGATATGGTGACTATGAAGCTAACTGGCCAATTACTGGGTCTTGCATGCGGCATCCGTTTAAAGTGCGAGTTTTGCTTGAGTTTCCTTTTCTCTGTATTACTTACATAGAGGTGCATCATGTACAGTACAGACTACAAACCACAAAAATGATAGATTGATGACTTTGTTTGGCTTTATCTACCGTTTGGATTTGCTTAG]




>consensus_752#0
CATATTCAGTTGGTTATATGGTCTGGTCGGTTCATGCGCACATCTTGTGATGGTAAATTC
ATCGTGGACAAGATCCCATATTGAAAATATTTGGAGGATACCAGAGCGTACTAGGAGGGT
ATACCCTCCATGTGATACTTCTGCCCTGCAGATGCTTCCACTGGAAAGATCAACTACACC
TCCTATTCTTATATCAGTTGCACAGTTTCGGCCAGAAAAGGCCCATGGACTTCAGCTTGA
GGCATTTGCAATTGCTCTTAAGAAGCTAAGTCCAGAATTTCCTAAGCCAAAGCTTCAATT
TGTTGGAAGCTGTCGGAATAAAGAGGATCTGGAAAGATTGCAAAAGCTTAAAGACAGATC
CACTGAACTACACATAGATGAGCTTGTGGAGTTCCACAAGGATATCTCTTACAGGGACTT
GGTACAGCTTCTAGGTGGTGCTGTTGCTGGGCTCCATTCAATGACAGATGAGCATTTTGG
GATAAGTGTTGTTGAATACATGGCTGCTGGTGCTATTCCAATTGCCCATAAATCGGCAGG
ACCAATGATGGACATTGTGCTAGATGAGGATGGCCAACAGACAGGATTTCTAGCCTCCGA
GAAGGAAGAATATGCCGAGGCAATTGTCAAGGTCTTGCGGATGCCGGAGGCAGAGAGGCA
TGAGATGGCAACAGCAGCACGAAAACGCGCTCAAAGATTTTCTGAGCATAGGTTCCATGA
AGATTTCACCGATGCAGTTCGCCCAATTTTGTCAGCAACATGAGCTTGACAAGCTAAGGA
GTCTCCTCTTAACTGTCTGAAACACTAACAAGTTTCACATGATATGGTGACTATGAAGCT
AACTGGCCAATTACTGGGTCTTGCATGCGGCATCCGTTTAAAGTGCGAGTTTTGCTTGAG
TTTCCTTTTCTCTGTATTACTTACATAGAGGTGCATCATGTACAGTACAGACTACAAACC
ACAAAAATGATAGATTGATGACTTTGTTTGGCTTTATCTACCGTTTGGATTTGCTTAG

consensusID : consensus_752#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CTGTGGGGCCGGTTTTTGAGGGGGGCCTTGTTTGTGGGCCCCCCTTCCACTGGCGGGTGTCGCCTTTTGGGGATAAGCGGTTGTGGAATACATGGCTGGTGGGGGTTTTTCCCGTTGCCCATTAATCGGCGGGGCCCTGTGTGGGCCTTGTGTTTGATGGGGATGGCCCCCACCCAGGGTTTTTTGCCTCCCAGAAGGAAGATTTTGCCGGGGCAATTGTCAAGGTTTTTCGGATGCCGGGGGCAGAAAGGCTTTAAATGGCAACAGCAGCCCGAAAACGCGCTCAAAGATTTTTTGAGCATAGGTTCCCTGAAGATTTTCCCGGTGCGGTTTGCCCCATTTTGTTAGCACCCTTAGCTTGCCAAGCTTTGGGGTTTCCTTTTAACTGTTTGAAACCCTAACCAGTTTCCCCTGATTTGGGGGCTTTGAAGCTAACTGGCCCATTTTTGGGCCTTGCCTGCGGCATCCGTTTAAAGTGCGAGTTTTGCCTGAGTTTCCCTTTTTTTGTATTACTTACAAAGAGGGGCCTCATGTTCCGTTCCGGCTTCCAACCCCAAAAATGATAGATTGGGGGCTTTGTTTGGCTTTTTTTCCCGTTTGGGTTTGGTTAGTTGTCCCGTCAATGTTTCCGTTTGTTTTGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA759333             [CTGTGGGGCCGGTTTTTGAGGGGGGCCTTGTTTGTGGGCCCCCCTTCCACTGGCGGGTGTCGCCTTTTGGGGATAAGCGGTTGTGGAATACATGGCTGGTGGGGGTTTTTCCCGTTGCCCATTAATCGGCGGGGCCCTGTGTGGGCCTTGTGTTTGATGGGGATGGCCCCCACCCAGGGTTTTTTGCCTCCCAGAAGGAAGATTTTGCCGGGGCAATTGTCAAGGTTTTTCGGATGCCGGGGGCAGAAAGGCTTTAAATGGCAACAGCAGCCCGAAAACGCGCTCAAAGATTTTTTGAGCATAGGTTCCCTGAAGATTTTCCCGGTGCGGTTTGCCCCATTTTGTTAGCACCCTTAGCTTGCCAAGCTTTGGGGTTTCCTTTTAACTGTTTGAAACCCTAACCAGTTTCCCCTGATTTGGGGGCTTTGAAGCTAACTGGCCCATTTTTGGGCCTTGCCTGCGGCATCCGTTTAAAGTGCGAGTTTTGCCTGAGTTTCCCTTTTTTTGTATTACTTACAAAGAGGGGCCTCATGTTCCGTTCCGGCTTCCAACCCCAAAAATGATAGATTGGGGGCTTTGTTTGGCTTTTTTTCCCGTTTGGGTTTGGTTAGTTGTCCCGTCAATGTTTCCGTTTGTTTTGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_752#1
CTGTGGGGCCGGTTTTTGAGGGGGGCCTTGTTTGTGGGCCCCCCTTCCACTGGCGGGTGT
CGCCTTTTGGGGATAAGCGGTTGTGGAATACATGGCTGGTGGGGGTTTTTCCCGTTGCCC
ATTAATCGGCGGGGCCCTGTGTGGGCCTTGTGTTTGATGGGGATGGCCCCCACCCAGGGT
TTTTTGCCTCCCAGAAGGAAGATTTTGCCGGGGCAATTGTCAAGGTTTTTCGGATGCCGG
GGGCAGAAAGGCTTTAAATGGCAACAGCAGCCCGAAAACGCGCTCAAAGATTTTTTGAGC
ATAGGTTCCCTGAAGATTTTCCCGGTGCGGTTTGCCCCATTTTGTTAGCACCCTTAGCTT
GCCAAGCTTTGGGGTTTCCTTTTAACTGTTTGAAACCCTAACCAGTTTCCCCTGATTTGG
GGGCTTTGAAGCTAACTGGCCCATTTTTGGGCCTTGCCTGCGGCATCCGTTTAAAGTGCG
AGTTTTGCCTGAGTTTCCCTTTTTTTGTATTACTTACAAAGAGGGGCCTCATGTTCCGTT
CCGGCTTCCAACCCCAAAAATGATAGATTGGGGGCTTTGTTTGGCTTTTTTTCCCGTTTG
GGTTTGGTTAGTTGTCCCGTCAATGTTTCCGTTTGTTTTGCCCCCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_752#0      CATATTCAGTTGGTTATATGGTCTGGTCGGTTCATGCGCACATCTTGTGATGGTAAATTC 60
consensus_752#1      ------------------------------------------------------------
                                                                                 

consensus_752#0      ATCGTGGACAAGATCCCATATTGAAAATATTTGGAGGATACCAGAGCGTACTAGGAGGGT 120
consensus_752#1      ------------------------------------------------------------
                                                                                 

consensus_752#0      ATACCCTCCATGTGATACTTCTGCCCTGCAGATGCTTCCACTGGAAAGATCAACTACACC 180
consensus_752#1      ------------------------------------------------------------
                                                                                 

consensus_752#0      TCCTATTCTTATATCAGTTGCACAGTTTCGGCCAGAAAAGGCCCATGGACTTCAGCTTGA 240
consensus_752#1      ------------------------------------------------------------
                                                                                 

consensus_752#0      GGCATTTGCAATTGCTCTTAAGAAGCTAAGTCCAGAATTTCCTAAGCCAAAGCTTCAATT 300
consensus_752#1      ------------------------------------------------------------
                                                                                 

consensus_752#0      TGTTGGAAGCTGTCGGAATAAAGAGGATCTGGAAAGATTGCAAAAGCTTAAAGACAGATC 360
consensus_752#1      ------------------------------------------------------------
                                                                                 

consensus_752#0      CACTGAACTACACATAGATGAGCTTGTGGAGTTCCACAAGGATATCTCTTACAGGGACTT 420
consensus_752#1      -------------------------------------------------------CTGTG 5
                                                                               * 

consensus_752#0      GGTACAGCTTCTAGGTGGTGC--TGTTGCTGGGCTCCATT--CAATGACAGATG--AGCA 474
consensus_752#1      GGGCCGGTTTTTGAGGGGGGCCTTGTTTGTGGGCCCCCCTTCCACTGGCGGGTGTCGCCT 65
                     **  * * ** *  * ** **  ****  ***** **  *  ** ** * * **    * 

consensus_752#0      TTTTGGGATAAGTG-TTGTTGAATACATGGCTGCTGGTG-CTATTCCAATTGCCCATAAA 532
consensus_752#1      TTTGGGGATAAGCGGTTGTGGAATACATGGCTGGTGGGGGTTTTTCCCGTTGCCCATTAA 125
                     *** ******** * **** ************* *** *  * ****  ******** **

consensus_752#0      TCGGCAGGACCAATGATGGACATTGTGCTAGATGAGGATGGCCAACAGACAGGATTTCTA 592
consensus_752#1      TCGGCGGGGCCCTGTGTGGGCCTTGTGTTTGATGGGGATGGCCCCCACCCAGGGTTTTTT 185
                     ***** ** **     *** * ***** * **** ********  **  **** *** * 

consensus_752#0      GCCTCCGAGAAGGAAGAATATGCCGAGGCAATTGTCAAGGTCTTGCGGATGCCGGAGGCA 652
consensus_752#1      GCCTCCCAGAAGGAAGATTTTGCCGGGGCAATTGTCAAGGTTTTTCGGATGCCGGGGGCA 245
                     ****** ********** * ***** *************** ** ********** ****

consensus_752#0      GAGAGGCATGAGATGGCAACAGCAGCACGAAAACGCGCTCAAAGATTTTCTGAGCATAGG 712
consensus_752#1      GAAAGGCTTTAAATGGCAACAGCAGCCCGAAAACGCGCTCAAAGATTTTTTGAGCATAGG 305
                     ** **** * * ************** ********************** **********

consensus_752#0      TTCCATGAAGATTTCACCGATGCAGTTCGCCCAATTTTGTCAGCAACATGAGCTTGACAA 772
consensus_752#1      TTCCCTGAAGATTTTCCCGGTGCGGTTTGCCCCATTTTGTTAGCACCCTTAGCTTGCCAA 365
                     **** *********  *** *** *** **** ******* **** * * ****** ***

consensus_752#0      GCTAAGGAGTCTCCTCTTAACTGTCTGAAACACTAACAAGTTTCACATGATATGGTGACT 832
consensus_752#1      GCTTTGGGGTTTCCTTTTAACTGTTTGAAACCCTAACCAGTTTCCCCTGATTTGGGGGCT 425
                     ***  ** ** **** ******** ****** ***** ****** * **** *** * **

consensus_752#0      ATGAAGCTAACTGGCCAATTACTGGGTCTTGCATGCGGCATCCGTTTAAAGTGCGAGTTT 892
consensus_752#1      TTGAAGCTAACTGGCCCATTTTTGGGCCTTGCCTGCGGCATCCGTTTAAAGTGCGAGTTT 485
                      *************** ***  **** ***** ***************************

consensus_752#0      TGCTTGAGTTTCCTTTTCTCTGTATTACTTACATAGAGGTGCATCATGTACAGTACAGAC 952
consensus_752#1      TGCCTGAGTTTCCCTTTTTTTGTATTACTTACAAAGAGGGGCCTCATGTTCCGTTCCGGC 545
                     *** ********* *** * ************* ***** ** ****** * ** * * *

consensus_752#0      TACAAACCACAAAAATGATAGATTGATGACTTTGTTTGGCTTTATCTACCGTTTGGATTT 1012
consensus_752#1      TTCCAACCCCAAAAATGATAGATTGGGGGCTTTGTTTGGCTTTTTTTCCCGTTTGGGTTT 605
                     * * **** ****************  * ************** * * ******** ***

consensus_752#0      GCTTAG------------------------------------------------------ 1018
consensus_752#1      GGTTAGTTGTCCCGTCAATGTTTCCGTTTGTTTTGCCCCCAAAAAAAAAAAAAAAAAAAA 665
                     * ****                                                      

consensus_752#0      -------------------
consensus_752#1      AAAAAAAAAAAAAAAAAAA 684