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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1453 fasta sequence
[GCAATCCCTATCCACCCATCCTCTGCTCCCTCATCCCCTCCCGTGCGCCGCCGCCACAAACCTCCGCCCGTTTCGCCCTGATCTCTCCACCGGACGCGCTCGTCCGCGGCCTCTCGGCGGCCACCACCGGCTAGGGCCTCGCGGGGCCAGGCAGATCCCACGGCGCGCGGGAGTTTCACCCGGAATTGGAGAAGGCCGAGGATTACGCGTTTCTTGGACGTGAGGTGGATGAGGCTCGCCACCGGCGTGGAGTGCGTCCGCAACACGGCTGCGGCGGCCGTCGCGCGTTCCTCCCAGAGTCGCGCGACGAGGTCGACGTCACGATGACGAGCTATTTCTACCCCTCCGTGCCGTCTCTCTACCCCCTCCGCCTCCACTTGCTGCGGCCGCGCGGGTACCTGCCGAGCACGGCGTCTCCGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGACAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCAGCCTTAGGTTGGTCGCGGCAATTACGGCGTTGCGCGCGACAGCGACCCCCGCGACGAGCCTGCGCGCGTCGGCCGAGCGTGACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGATGGTCAACCACTTGTGTGAGTTATGTCTTTTCCTTGTTATATGAAGGAATTGTGTATCATATTTTCAGGTGCCCTGTCGCAATTGAAGTAATGGAGGATAGCTTGTTATGCTTTCAAACTTAGCTCGCTAAGTGTGCATAAACTTGTCACTTTGTCAGTAATCTGCCTTAGATTATTTTGAAATACTCCTACTGGTTATTGTTGGCTGTGTAGCGATTTGCTGTTTCAAACGAAACGAAAACTGAGCCGGAGGCCCCAGCATTGTCTTTGACGCCTGCATTGACTTCAACTGATGGAGCTCATCAAAGCCGCTCCTTGCTGCTATGGAGAACTCAACTCCGCTAATTGCGCATATGCCAGGGGTGCCAACGAGGAGGCTGTCCAAAGCACTCCAACTCCGTCACCGCTTCTGAAGGAGTTCATCAGTTCAATCGCTGTGGCTGGGTAGACTGCTTCAGCAATGAGCTTGGGAATGGGATTTTGGGGGTGGGGGGGGGGGGCGAACCCCAAGATTGGGTGGCAGCAGCAGATACTCAATCTGGAGGTTTATTTGAAGAGTACGGAGCTTGTGCGTGAGCAAATCATTACTGCGCTAGAAGATCTGAGGTCTTCTTCTGTTGTAGAGTGTGGCATTAGTTTATGCATGTATTATAACATTCCGATTTGTATTCTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTCGGAACATTGATATGTAGATGAAATGAGGGTCAAAGCTGGTCAAAACCTGTAGCTACTTTGTGATGTGATCTATCTTATAAT]
[+] EMBL AK119654 [GCAATCCCTATCCACCCATCCTCTGCTCCCTCATCCCCTCCCGTGCGCCGCCGCCACAAACCTCCGCCCGTTTCGCCCTGATCTCTCCACCGGACGCGCTCGTCCGCGGCCTCTCGGCGGCCACCACCGGCTAGGGCCTCGCGGGGCCAGGCAGATCCCACGGCGCGCGGGAGTTTCACCCGGAATTGGAGAAGGCCGAGGATTACGCGTTTCTTGGACGTGAGGTGGATGAGGCTCGCCACCGGCGTGGAGTGCGTCCGCAACACGGCTGCGGCGGCCGTCGCGCGTTCCTCCCAGAGTCGCGCGACGAGGTCGACGTCACGATGACGAGCTATTTCTACCCCTCCGTGCCGTCTCTCTACCCCCTCCGCCTCCACTTGCTGCGGCCGCGCGGGTACCTGCCGAGCACGGCGTCTCCGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGACAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCAGCCTTAGGTTGGTCGCGGCAATTACGGCGTTGCGCGCGACAGCGACCCCCGCGACGAGCCTGCGCGCGTCGGCCGAGCGTGACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGATGGTCAACCACTTGTGTGAGTTATGTCTTTTCCTTGTTATATGAAGGAATTGTGTATCATATTTTCAGGTGCCCTGTCGCAATTGAAGTAATGGAGGATAGCTTGTTATGCTTTCAAACTTAGCTCGCTAAGTGTGCATAAACTTGTCACTTTGTCAGTAATCTGCCTTAGATTATTTTGAAATACTCCTACTGGTTATTGTTGGCTGTGTAGCGATTTGCTGTTTCAAACGAAACGAAAACTGAGCCGGAGGCCCCAGCATTGTCTTTGACGCCTGCATTGACTTCAACTGATGGAGCTCATCAAAGCCGCTCCTTGCTGCTATGGAGAACTCAACTCCGCTAATTGCGCATATGCCAGGGGTGCCAACGAGGAGGCTGTCCAAAGCACTCCAACTCCGTCACCGCTTCTGAAGGAGTTCATCAGTTCAATCGCTGTGGCTGGGTAGACTGCTTCAGCAATGAGCTTGGGAATGGGATTTTGGGGGTGGGGGGGGGGGGCGAACCCCAAGATTGGGTGGCAGCAGCAGATACTCAATCTGGAGGTTTATTTGAAGAGTACGGAGCTTGTGCGTGAGCAAATCATTACTGCGCTAGAAGATCTGAGGTCTTCTTCTGTTGTAGAGTGTGGCATTAGTTTATGCATGTATTATAACATTCCGATTTGTATTCTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTCGGAACATTGATATGTAGATGAAATGAGGGTCAAAGCTGGTCAAAACCTGTAGCTACTTTGTGATGTGATCTATCTTATAAT]
[+] EMBL AK121077 [ CCACAAACCTCCGCCCGTTTCGCCCTGATCTCTCCACCGGACGCGCTCGTCCGCGGCCTCTCGGCGGCCACCACCGGCTAGGGCCTCGCGGGGCCAGGCAGATCCCACGGCGCGCGGGAGTTTCACCCGGAATTGGAGAAGGCCGAGGATTACGCGTTTCTTGGACGTGAGGTGGATGAGGCTCGCCACCGGCGTGGAGTGCGTCCGCAACACGGCTGCGGCGGCCGTCGCGCGTTCCTCCCAGAGTCGCGCGACGAGGTCGACGTCACGATGACGAGCTATTTCTACCCCTCCGTGCCGTCTCTCTACCCCCTCCGCCTCCACTTGCTGCGGCCGCGCGGGTACCTGCCGAGCACGGCGTCTCCGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGACAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCAGCCTTAGGTTGGTCGCGGCAATTACGGCGTTGCGCGCGACAGCGACCCCCGCGACGAGCCTGCGCGCGTCGGCCGAGCGTGACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGATGGTCAACCACATGTGTGAGTTATGTCTTTTCCTTGTTATATGAAGGAATTGTGTATCATATTTTCAGGTGCCCTGTTGCAATTGAAGTAATGGAGGATAGCTTGTTATGCTTTCAAACTTAGCTCGCTAAGTGTGCATAAACTTGTCACTTTGTCAGTGATCTGCCTTA ]
[+] EMBL AU166241 [ AGCACGGCGTCTCCGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGACAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCA NCTTAGGTTGGTCGCGGCAATTACGGCGTTGCGCGCNACANAACCCCCCGCNACGAGCCTGCGCGCNTCGGCCGAGCGTAACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGATGGTCAACCATTTGTGTGAGTTATGTCTTTTTGTTGTTATATGAAGGAATTGTGTATCATAaaaa ]
consensusID : consensus_7539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1191 fasta sequence
[TGGGTATGGGGTACCCATAATCTCCACACTCGACTTCACGGCGCGGCGGGGCACCACGTTCGCGTCGCACCAGTACGACACGGGGCCCTTCTACGACGAGATCCGGCGGCGCCTCTCCTTCGACTTCACCAAGAGCCAGCTCGTCGAGAAGCTCCGCCGCCTCAAGAAGAAGTACCGCCTCTGCGCCGCCCGCATGGCCTCCTCCCCCCACGCCGCCGCCGCCGGCTTCGCCTTCAGGACCCCCCACGAGGGCGCCATCTACGACCTCGCCCGCCACATCTGGCCCCCCGCCCTCAAGCGCGACGGCACCGCCTCCGACGACGACGACATCAACCCCGCCGCCGCAGCTGCCACTGCGGCAGTTATGACGCCTGTTGCGATGGAGGATGGTTTCGGCGGAAGCGCCCCTACGCCGACGCCGACGCCGAGGGGCAGGGGAGGGCGGCGCGTCCGGCGGAGAATGGCGCAAGAGCAGGAGGCCGCAGCATTGCCTTCCGCGCCGGCGCTGACCTCAACAGATGGAGCTCATCAGGAGCCGCTTGTCGCGGCCATGGAGAACACATTGCCGCAGATTGCGCAGCTGCCACCGGTGTCGGAGACGGAGCCAATGCCAGTGATTGCCAATGGTGCTAATGAGGAGGCTGTCCGGAGCGTTCTGTCACGTCTACTGAAGGAGTTCATCACCTCATTCGCTGTGGTTGGGCAGACTGGTCCAGGAATGGGCTTAAACATGGGATTTGGGGGTGCTGGATTAAACGCTGATATTGCTGGCCTTGGTTTCGGCATTGCCGGGCTGAACCCTGGGGTGCCCGGTGCTGATAGGTGGAGGCAGCATCAGATACTTGAGCTGGAGGTTTATCTGAAGAGGATTGAGCTTGTGCGTGAGCAAGTCACCGCCGCGCTAGATGAGCTCAGGTCATCGGAAGGTTGATTTGTTCTCTTGTTTCATAGTCCCGTCGATACTTTCTCTCATTAGCAGGGAGTACTTTCAACTTCTTCTGTTGTAGTGTGTGCCATTAGTTGATGCATGTATTATAAAGTTCTGATTGTATACTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTGAGAACATCGATGTGTAGATGAAATGAGGATCAAAGCTGATCAATACTTGTAGCTCTACTTTATCTTATAATTTGATAAAATGCAATGAAGA]
[+] EMBL AK072886 [TGGGTATGGGGTACCCATAATCTCCACACTCGACTTCACGGCGCGGCGGGGCACCACGTTCGCGTCGCACCAGTACGACACGGGGCCCTTCTACGACGAGATCCGGCGGCGCCTCTCCTTCGACTTCACCAAGAGCCAGCTCGTCGAGAAGCTCCGCCGCCTCAAGAAGAAGTACCGCCTCTGCGCCGCCCGCATGGCCTCCTCCCCCCACGCCGCCGCCGCCGGCTTCGCCTTCAGGACCCCCCACGAGGGCGCCATCTACGACCTCGCCCGCCACATCTGGCCCCCCGCCCTCAAGCGCGACGGCACCGCCTCCGACGACGACGACATCAACCCCGCCGCCGCAGCTGCCACTGCGGCAGTTATGACGCCTGTTGCGATGGAGGATGGTTTCGGCGGAAGCGCCCCTACGCCGACGCCGACGCCGAGGGGCAGGGGAGGGCGGCGCGTCCGGCGGAGAATGGCGCAAGAGCAGGAGGCCGCAGCATTGCCTTCCGCGCCGGCGCTGACCTCAACAGATGGAGCTCATCAGGAGCCGCTTGTCGCGGCCATGGAGAACACATTGCCGCAGATTGCGCAGCTGCCACCGGTGTCGGAGACGGAGCCAATGCCAGTGATTGCCAATGGTGCTAATGAGGAGGCTGTCCGGAGCGTTCTGTCACGTCTACTGAAGGAGTTCATCACCTCATTCGCTGTGGTTGGGCAGACTGGTCCAGGAATGGGCTTAAACATGGGATTTGGGGGTGCTGGATTAAACGCTGATATTGCTGGCCTTGGTTTCGGCATTGCCGGGCTGAACCCTGGGGTGCCCGGTGCTGATAGGTGGAGGCAGCATCAGATACTTGAGCTGGAGGTTTATCTGAAGAGGATTGAGCTTGTGCGTGAGCAAGTCACCGCCGCGCTAGATGAGCTCAGGTCATCGGAAGGTTGATTTGTTCTCTTGTTTCATAGTCCCGTCGATACTTTCTCTCATTAGCAGGGAGTACTTTCAACTTCTTCTGTTGTAGTGTGTGCCATTAGTTGATGCATGTATTATAAAGTTCTGATTGTATACTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTGAGAACATCGATGTGTAGATGAAATGAGGATCAAAGCTGATCAATACTTGTAGCTCTACTTTATCTTATAATTTGATAAAATGCAATGAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7539#0 GCAATCCCTATCCACCCATCCTCTGCTCCCTCATCCCCTCCCGTGCGCCGCCGCCACAAA 60
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 CCTCCGCCCGTTTCGCCCTGATCTCTCCACCGGACGCGCTCGTCCGCGGCCTCTCGGCGG 120
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 CCACCACCGGCTAGGGCCTCGCGGGGCCAGGCAGATCCCACGGCGCGCGGGAGTTTCACC 180
consensus_7539#1 --------------------------------TGGGTATGGGGTACCCATAATCTCCACA 28
* ** * * * * ***
consensus_7539#0 CGGAATTGGAGAAGGCCGAGGATTAC-GCGTTTCTTGGACGTGAGGTGGATGAGGCTCGC 239
consensus_7539#1 CTCGACTTCACGGCGCGGCGGGGCACCACGTTCGCGTCGCACCAGTACGACACGGGGCCC 88
* * * * ** * ** ** **** * ** ** ** * *
consensus_7539#0 CACCGGCGTGGAGTGCGTCCGCAACACGGCTGCGGCGGCCGTCGCGCGTTCCTCCCAGAG 299
consensus_7539#1 TTCTACGACGAGATCCGGCGGCGCCTCTCCTTCGACT-TCACCAAGAGCCAGCTC----G 143
* * * ** * ** * * ** ** * * * * * * *
consensus_7539#0 TCGCGCGACGAGGTCGACGTCACGATGACGAGCTATTTCTACCCC-TCCGTGCCGTCTCT 358
consensus_7539#1 TCGAGAAGCTCCGCCGCC-TCAAGAAGAAGTACCGCCTCTGCGCCGCCCGCATGGCCTCC 202
*** * * * ** * *** ** ** * * *** * ** *** * ***
consensus_7539#0 CTACCCC-CTCCGCCTCCACTTGCTGCGGCCGCGCGGGTACCTGCCGAGCACGGCGTCTC 417
consensus_7539#1 TCCCCCCACGCCGCCGCCGCCGGCTTCGCCTTCA-GGACCCCCCACGAGGGCGCCATCTA 261
**** * ***** ** * *** ** * * ** ** **** ** * ***
consensus_7539#0 CGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGA 477
consensus_7539#1 CGACCTCGCCCGCCACATC--------TGGC----CCCCCGCCCTCAAGCGCGACGGCAC 309
** * *** ** * * ** ** ** * * ***** ***
consensus_7539#0 CAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCAG 537
consensus_7539#1 C--GCCTCCGACGACGA-CGACATC---AACCCCGCCGCCGCAGCTGCCAC-TGCGGCAG 362
* ** * *** ** * ** ** * * * **** **** * * *** ***
consensus_7539#0 CCTTAGGTTGGTCGCGGCAATTACGG-CGTTGCGCGCGACAGCGACCCCCGCGACGA-GC 595
consensus_7539#1 --TTATGACGCCTGTTGCGATGGAGGATGGTTTCGGCGGAAGCG-CCCCTACGCCGACGC 419
*** * * * ** ** ** * * *** **** **** ** *** **
consensus_7539#0 CTGCGCGCGTCGGCCGAGCGTGACGATTAGCGCCCTGGCCAAGAAGGCGAGCAGACCCGA 655
consensus_7539#1 CGACGCCGAGGGGCAGGGGAGGGCGGC--GCGTCC-GGCGGAGAATG-GCGCAAGAGCAG 475
* *** *** * * * ** *** ** *** **** * * *** *
consensus_7539#0 TGGTCAACCACTTGTGTGAGTTATGTCTTTTCCTTGTTATATGAAGGAATTGTGTATCAT 715
consensus_7539#1 GAGGCCGCAGCAT---TGCCTTCCGCGCCGGCGCTG--ACCTCAACAGATGGAGC----- 525
* * * * * ** ** * * ** * * ** ** * *
consensus_7539#0 ATTTTCAGGTGCCCTGTCGCAATTGAAGTAATGGAGGATAGCTTGTTATGCTTTCAAACT 775
consensus_7539#1 -TCATCAGGAGCCGCTT----GTCGCGGCCATGGAGAACACATTGCCGCAGATT---GCG 577
* ***** *** * * * * ****** * * *** ** *
consensus_7539#0 TAGCTCGCTAAGTGTGCATAAACTTGTCACTTTGTCAGTAATCTGCCTTAGATTATTTTG 835
consensus_7539#1 CAGCT-GCCACCGGTGTCGGAGACGGAGCCAATGCCAGTGAT-TGCC------------- 622
**** ** * *** * * * ** **** ** ****
consensus_7539#0 AAATACTCCTACTGGTTATTGTTGGCTGTGTAGCGATTTGCTGTTTCAAACGAAACGAAA 895
consensus_7539#1 -AATGGTGCTAATGA-----GGAGGCTGTCCGGAGCGTT-CTGTC---------ACGTCT 666
*** * *** ** * ****** * * ** **** ***
consensus_7539#0 ACTGAGCCGGAGGCCCCAGCATTGTCTTTGACGCCTGCATTGACT--TCAACTGATGGAG 953
consensus_7539#1 ACTGAA--GGAGTTCATCACCTCATTCGCTGTGGTTGGGCAGACTGGTCCAGGAATGG-G 723
***** **** * * * * * ** **** ** * **** *
consensus_7539#0 CTCATCAAAGCCGCTCCTTGCTGCTATGGAGAACTCAACTCCGCTAATTGCGCATATGCC 1013
consensus_7539#1 CTTAAACATGGGATTTGGGGGTGCT-----GGATTAAACGCTGATA-TTGC-----TGGC 772
** * * * * * **** * * * *** * * ** **** ** *
consensus_7539#0 AGGGGTGCCAACGAGGAGGCTGTCCAAAGCACTCCAACTCCGTCACCGCTTCTGAAGGAG 1073
consensus_7539#1 CTTGGTTTCGGCATT---GCCGGGCTGAACCCTGGGGTGCC--CGGTGCTGATAGGTGGA 827
*** * * ** * * * * ** ** * *** * *
consensus_7539#0 TTCATCAGTTCAATCGCTGTGGCTGGGTAGACTGCTTCAGCAATGAGCTTGGGAATGGGA 1133
consensus_7539#1 GGCAGCA--TCAGATACTTGAGCTGG--AGGTTTATCTGAAGA--------GGATTGAGC 875
** ** *** ** ***** ** * * * *** ** *
consensus_7539#0 TTTTGGGGGTGGGGGGGGGGGGCGAACCCCAAGATTGGGTGGCAGCAGCAGATACTCAAT 1193
consensus_7539#1 TTGTGCGTGAGCAAGTCACCGCCG---CGCTAGATGAGCTCAGGTCATCGGAAGGTTGAT 932
** ** * * * * * ** * * **** * * ** * ** * **
consensus_7539#0 CTGGAGGTTTATTTGAAGAGTACGGAGCTTGTGCGTGAGCAAATCATTACTGCGCTAGAA 1253
consensus_7539#1 TTGTTCTCTTGTTTCATAGTCCCGTCGATACTTTCTC------TCATTA----GCAGGGA 982
** ** *** * ** * * * * ****** ** * *
consensus_7539#0 GATCTGAGGTCTTCTTCTGTTGTAGAGTGTGGCATTAGTTTATGCATGTATTATAACATT 1313
consensus_7539#1 GTACTTTCAACTTCTTCTGTTGTAGTGTGTGCCATTAGTTGATGCATGTATTATAAAGTT 1042
* ** *************** ***** ******** *************** **
consensus_7539#0 CCGATTTGTATTCTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTCG 1373
consensus_7539#1 CTGATT-GTATACTTGGATCTAGCTTAGCTGCAGGTAGTTGCCCATAAGGTTAGAGGTGA 1101
* **** **** **********************************************
consensus_7539#0 GAACATTGATATGTAGATGAAATGAGGGTCAAAGCTGGTCAAAACCTGTAGCT--ACTTT 1431
consensus_7539#1 GAACATCGATGTGTAGATGAAATGAGGATCAAAGCTGATCAATACTTGTAGCTCTACTTT 1161
****** *** **************** ********* **** ** ******* *****
consensus_7539#0 GTGATGTGATCTATCT---TATAAT----- 1453
consensus_7539#1 ATCTTATAATTTGATAAAATGCAATGAAGA 1191
* * * ** * * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||