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Oryza sativa
cluster # 7542 cluster # 7542       Sequences # 4       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7542#0 length = 1603 sequences # 1  
consensus_7542#1 length = 795 sequences # 1  
consensus_7542#2 length = 740 sequences # 1  
consensus_7542#3 length = 561 sequences # 1  

consensusID : consensus_7542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1603
fasta sequence
                              [CGCGGTCGCCGCCGCAAGGTTTATCTCCTCCGCGAGGCCGCGACCTGACGCCGCCGCCGCCGGCGGCCGCCGCCTCGTCGTCGATGAGCTCGCCATGGCGCCCTGCCGAACCCTATCTACGCCGCCGCGGTAGCAGGGTTCAGATTCTGCAGGGCCGCAGGCGCGGACTAGGCGAAGAAGGGCCGTCCCCCGTTCATGGCACTGCCGCGCGAGCGTCCCATTCCCCACTTTCTCGCCGGTCGCGATGAGCAGTAGGCCAGAGTCTGAAATGTGTTCGTCTCAGCCGGCTCAATCGTTCGGCGGGCGCTGACGTTGAAGTATAATGCAGCAACAGGTGGTCCAAGATTGTAAAATGCAGAGAAATCTCTGACGTTGAAATTTTGCCGCCATCCTGGAGCATAAACTGTTTGTCGTGCTTCCTGTTTGAATAGCACAAAAACAAGCCGATGAATTCCAGCCGGTGGCCGTGGAGCTTCGTACGGAACTATTTCATTGCCTGAAACAAAAAGAGTGTGCCTCTCTGATATCCTTGGGATGAGCCAGATGAGAGGATCAGGCGTGCTTCATGTATGCACTACCGAAGAGGAAAAAGATTAATGCATGTCTGGGAACAAGTTATTCACTGTGGACACTTCTGTTACAGGCATGCAGGTACAACTTTCCTTGTCCACTAAATACAGCTGTACAGGATCATTCGGACCAAACAGGAACAGCACTTAAAATCCAGTTGCACACAGAAGTTTCACCTTTGATGCTACAAACGGGCATTGGACTTTTCGAAGGACGGAGGATGGATACCATCACACTATGGGGTTGTGTTCAAGAACACCACATGTAGCTGCCTTTGCTCTCCATTCAAAAACATCACATGCGACTGCCTCGGCTCTCCACATAAACATCAATGTCGAGAATGCCATGAAGAATCCATGCAGATTTTAATATTTTTCAGCTGGGAATACAGTGAGGCAAGGAATATACTCGACATCCAAAAATCTTGTTGGAATAAAGGTACAGTCTTCAGATCAGATGAGCATCTCCACCAGGGCACTGCATGGCTGCAACCAGAAAAGCTGAAAGATTAACTTTGAATTGTTGAAAGCTCTTGCATGTCAGTCACAAAAGGGGGGAAAAGGCACCAAGGAATTTCCCCGCACTGCAAACAACCTACACCCAGCTTCTGTGGATGAACTCGTGCCATGCCAGTATGCCACCGTCCCTGCTGCCTCAGGCCCCTCTAGATTGTTCGTGGACCAGCTGGAAACTGTGCTAAAGCTGATCTGATCTCCAGGTGATACATGACAAGCTTCGTTGCTGCAGAAGAATGCAGGGTCAGGTGACCTGGAAAGATTGATGAGAAGAATTTGAGAATCTTGTACAGCAAATTGGATGGAGATAAGGTGAATGGCTGCGGTCCACTTCAAAGGTGAACTGGGACCAGCCGTGCATACAGAAACAACGTCTCTCATTTGTCCCGGTGCCTGCATAAACAATGTGAGCGTGAACGTCAAAGTGAAGCTCAACACAGTTCTTCTGATACTCTCTCTTGTTGGTCCATATTATAAGGTGTTCTGTTTTTCATAAGTCAAACTTCTCCAACATTGAT]

[+] EMBL AK119919             [CGCGGTCGCCGCCGCAAGGTTTATCTCCTCCGCGAGGCCGCGACCTGACGCCGCCGCCGCCGGCGGCCGCCGCCTCGTCGTCGATGAGCTCGCCATGGCGCCCTGCCGAACCCTATCTACGCCGCCGCGGTAGCAGGGTTCAGATTCTGCAGGGCCGCAGGCGCGGACTAGGCGAAGAAGGGCCGTCCCCCGTTCATGGCACTGCCGCGCGAGCGTCCCATTCCCCACTTTCTCGCCGGTCGCGATGAGCAGTAGGCCAGAGTCTGAAATGTGTTCGTCTCAGCCGGCTCAATCGTTCGGCGGGCGCTGACGTTGAAGTATAATGCAGCAACAGGTGGTCCAAGATTGTAAAATGCAGAGAAATCTCTGACGTTGAAATTTTGCCGCCATCCTGGAGCATAAACTGTTTGTCGTGCTTCCTGTTTGAATAGCACAAAAACAAGCCGATGAATTCCAGCCGGTGGCCGTGGAGCTTCGTACGGAACTATTTCATTGCCTGAAACAAAAAGAGTGTGCCTCTCTGATATCCTTGGGATGAGCCAGATGAGAGGATCAGGCGTGCTTCATGTATGCACTACCGAAGAGGAAAAAGATTAATGCATGTCTGGGAACAAGTTATTCACTGTGGACACTTCTGTTACAGGCATGCAGGTACAACTTTCCTTGTCCACTAAATACAGCTGTACAGGATCATTCGGACCAAACAGGAACAGCACTTAAAATCCAGTTGCACACAGAAGTTTCACCTTTGATGCTACAAACGGGCATTGGACTTTTCGAAGGACGGAGGATGGATACCATCACACTATGGGGTTGTGTTCAAGAACACCACATGTAGCTGCCTTTGCTCTCCATTCAAAAACATCACATGCGACTGCCTCGGCTCTCCACATAAACATCAATGTCGAGAATGCCATGAAGAATCCATGCAGATTTTAATATTTTTCAGCTGGGAATACAGTGAGGCAAGGAATATACTCGACATCCAAAAATCTTGTTGGAATAAAGGTACAGTCTTCAGATCAGATGAGCATCTCCACCAGGGCACTGCATGGCTGCAACCAGAAAAGCTGAAAGATTAACTTTGAATTGTTGAAAGCTCTTGCATGTCAGTCACAAAAGGGGGGAAAAGGCACCAAGGAATTTCCCCGCACTGCAAACAACCTACACCCAGCTTCTGTGGATGAACTCGTGCCATGCCAGTATGCCACCGTCCCTGCTGCCTCAGGCCCCTCTAGATTGTTCGTGGACCAGCTGGAAACTGTGCTAAAGCTGATCTGATCTCCAGGTGATACATGACAAGCTTCGTTGCTGCAGAAGAATGCAGGGTCAGGTGACCTGGAAAGATTGATGAGAAGAATTTGAGAATCTTGTACAGCAAATTGGATGGAGATAAGGTGAATGGCTGCGGTCCACTTCAAAGGTGAACTGGGACCAGCCGTGCATACAGAAACAACGTCTCTCATTTGTCCCGGTGCCTGCATAAACAATGTGAGCGTGAACGTCAAAGTGAAGCTCAACACAGTTCTTCTGATACTCTCTCTTGTTGGTCCATATTATAAGGTGTTCTGTTTTTCATAAGTCAAACTTCTCCAACATTGAT]


>consensus_7542#0 CGCGGTCGCCGCCGCAAGGTTTATCTCCTCCGCGAGGCCGCGACCTGACGCCGCCGCCGC CGGCGGCCGCCGCCTCGTCGTCGATGAGCTCGCCATGGCGCCCTGCCGAACCCTATCTAC GCCGCCGCGGTAGCAGGGTTCAGATTCTGCAGGGCCGCAGGCGCGGACTAGGCGAAGAAG GGCCGTCCCCCGTTCATGGCACTGCCGCGCGAGCGTCCCATTCCCCACTTTCTCGCCGGT CGCGATGAGCAGTAGGCCAGAGTCTGAAATGTGTTCGTCTCAGCCGGCTCAATCGTTCGG CGGGCGCTGACGTTGAAGTATAATGCAGCAACAGGTGGTCCAAGATTGTAAAATGCAGAG AAATCTCTGACGTTGAAATTTTGCCGCCATCCTGGAGCATAAACTGTTTGTCGTGCTTCC TGTTTGAATAGCACAAAAACAAGCCGATGAATTCCAGCCGGTGGCCGTGGAGCTTCGTAC GGAACTATTTCATTGCCTGAAACAAAAAGAGTGTGCCTCTCTGATATCCTTGGGATGAGC CAGATGAGAGGATCAGGCGTGCTTCATGTATGCACTACCGAAGAGGAAAAAGATTAATGC ATGTCTGGGAACAAGTTATTCACTGTGGACACTTCTGTTACAGGCATGCAGGTACAACTT TCCTTGTCCACTAAATACAGCTGTACAGGATCATTCGGACCAAACAGGAACAGCACTTAA AATCCAGTTGCACACAGAAGTTTCACCTTTGATGCTACAAACGGGCATTGGACTTTTCGA AGGACGGAGGATGGATACCATCACACTATGGGGTTGTGTTCAAGAACACCACATGTAGCT GCCTTTGCTCTCCATTCAAAAACATCACATGCGACTGCCTCGGCTCTCCACATAAACATC AATGTCGAGAATGCCATGAAGAATCCATGCAGATTTTAATATTTTTCAGCTGGGAATACA GTGAGGCAAGGAATATACTCGACATCCAAAAATCTTGTTGGAATAAAGGTACAGTCTTCA GATCAGATGAGCATCTCCACCAGGGCACTGCATGGCTGCAACCAGAAAAGCTGAAAGATT AACTTTGAATTGTTGAAAGCTCTTGCATGTCAGTCACAAAAGGGGGGAAAAGGCACCAAG GAATTTCCCCGCACTGCAAACAACCTACACCCAGCTTCTGTGGATGAACTCGTGCCATGC CAGTATGCCACCGTCCCTGCTGCCTCAGGCCCCTCTAGATTGTTCGTGGACCAGCTGGAA ACTGTGCTAAAGCTGATCTGATCTCCAGGTGATACATGACAAGCTTCGTTGCTGCAGAAG AATGCAGGGTCAGGTGACCTGGAAAGATTGATGAGAAGAATTTGAGAATCTTGTACAGCA AATTGGATGGAGATAAGGTGAATGGCTGCGGTCCACTTCAAAGGTGAACTGGGACCAGCC GTGCATACAGAAACAACGTCTCTCATTTGTCCCGGTGCCTGCATAAACAATGTGAGCGTG AACGTCAAAGTGAAGCTCAACACAGTTCTTCTGATACTCTCTCTTGTTGGTCCATATTAT AAGGTGTTCTGTTTTTCATAAGTCAAACTTCTCCAACATTGAT



consensusID : consensus_7542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence
                              [GGGCATTGGACTTTTCGAAGGACGGAGGATGGATACCATCACACTATGGGGTTGTGTTCAAGAACACCACATGTAGCTGCCTTTGCTCTCCATTCAAAAACATCACATGCGACTGCCTCGGCTCTCCACATAAACATCAATGTCGAGAATGCCATGAAGAATCCATGCAGATTTTAATATTTTTCAGCTGGGAATACAGTGAGGCAAGGAATATACTCGACATCCAAAAATCTTGTTGGAATAAAGCTCTTGCATGTCAGTCACAAAAGGGGGGAAAAGGCACCAAGGAATTTCCCCGCACTGCAAACAACCTACACCCAGCTTCTGTGGATGAACTCGTGCCATGCCAGTGAGAGCTGAATCTATTCTGATGGGGAGCAATCTTATCATTTTGACAGCATGCATCTGAAGGTGCTAGTGGATAAGTGGAAGCTTACTGAATACTCTTTTCTGTGATACATGACAAGCTTCGTTGCTGCAGAAGAATGCAGGGTCAGGTGACCTGGAAAGATTGATGAGAAGAATTTGAGAATCTTGTACAGCAAATTGGATGGAGATTAGGTGAATGGCTGCGGTCCACTTCAAAGGTGAACTGGGACCAGCCGTGCATACAGAAACAACGTCTCTCATTTGTCCCGGTGCCTGCATAAACAATGTGAGCGTGAACGTCAAAGTGAAGCTCAACACAGTTCTTCTGATACTCTCTCTTGTTGGTCCATATTATAAGGTGTTCTGTTTTTCATAAGTCAAACTTCTCCAACATTGATCAAGTTTATGAAAAAAAACACATCAATC]

[-] EMBL CB632235             [GGGCATTGGACTTTTCGAAGGACGGAGGATGGATACCATCACACTATGGGGTTGTGTTCAAGAACACCACATGTAGCTGCCTTTGCTCTCCATTCAAAAACATCACATGCGACTGCCTCGGCTCTCCACATAAACATCAATGTCGAGAATGCCATGAAGAATCCATGCAGATTTTAATATTTTTCAGCTGGGAATACAGTGAGGCAAGGAATATACTCGACATCCAAAAATCTTGTTGGAATAAAGCTCTTGCATGTCAGTCACAAAAGGGGGGAAAAGGCACCAAGGAATTTCCCCGCACTGCAAACAACCTACACCCAGCTTCTGTGGATGAACTCGTGCCATGCCAGTGAGAGCTGAATCTATTCTGATGGGGAGCAATCTTATCATTTTGACAGCATGCATCTGAAGGTGCTAGTGGATAAGTGGAAGCTTACTGAATACTCTTTTCTGTGATACATGACAAGCTTCGTTGCTGCAGAAGAATGCAGGGTCAGGTGACCTGGAAAGATTGATGAGAAGAATTTGAGAATCTTGTACAGCAAATTGGATGGAGATTAGGTGAATGGCTGCGGTCCACTTCAAAGGTGAACTGGGACCAGCCGTGCATACAGAAACAACGTCTCTCATTTGTCCCGGTGCCTGCATAAACAATGTGAGCGTGAACGTCAAAGTGAAGCTCAACACAGTTCTTCTGATACTCTCTCTTGTTGGTCCATATTATAAGGTGTTCTGTTTTTCATAAGTCAAACTTCTCCAACATTGATCAAGTTTATGAAAAAAAACACATCAATC]


>consensus_7542#1 GGGCATTGGACTTTTCGAAGGACGGAGGATGGATACCATCACACTATGGGGTTGTGTTCA AGAACACCACATGTAGCTGCCTTTGCTCTCCATTCAAAAACATCACATGCGACTGCCTCG GCTCTCCACATAAACATCAATGTCGAGAATGCCATGAAGAATCCATGCAGATTTTAATAT TTTTCAGCTGGGAATACAGTGAGGCAAGGAATATACTCGACATCCAAAAATCTTGTTGGA ATAAAGCTCTTGCATGTCAGTCACAAAAGGGGGGAAAAGGCACCAAGGAATTTCCCCGCA CTGCAAACAACCTACACCCAGCTTCTGTGGATGAACTCGTGCCATGCCAGTGAGAGCTGA ATCTATTCTGATGGGGAGCAATCTTATCATTTTGACAGCATGCATCTGAAGGTGCTAGTG GATAAGTGGAAGCTTACTGAATACTCTTTTCTGTGATACATGACAAGCTTCGTTGCTGCA GAAGAATGCAGGGTCAGGTGACCTGGAAAGATTGATGAGAAGAATTTGAGAATCTTGTAC AGCAAATTGGATGGAGATTAGGTGAATGGCTGCGGTCCACTTCAAAGGTGAACTGGGACC AGCCGTGCATACAGAAACAACGTCTCTCATTTGTCCCGGTGCCTGCATAAACAATGTGAG CGTGAACGTCAAAGTGAAGCTCAACACAGTTCTTCTGATACTCTCTCTTGTTGGTCCATA TTATAAGGTGTTCTGTTTTTCATAAGTCAAACTTCTCCAACATTGATCAAGTTTATGAAA AAAAACACATCAATC



consensusID : consensus_7542#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 740
fasta sequence
                              [GCCTCTTCGTCGATGAGCTCGCCATGGCGCCCTGCCGAACCCTATCTACGCCGCCGCGGTAGCAGGGTTCAGGGCCGCAGGCGCGGACTAGGCGAAGAAGGGCCGTCCCCCGTTCATGGCGCTGCCGCGCGAGCGTCCCATTCCCCACTTTCTCGCCGGTCGCGATGAGCAGTAGGCCAGAGTCTGAAATGTGTTCGTCTCAGCCGGCTCAATCGTTCGGCGGGCGCTGACGTTGAAGTATAATGCAGCAACAGGTGGTCCAAGATTGTAAAATGCAGAGAAATCTCTGACGTTGAAATTTTGCCGCCATCCTGGAGCATAAACTGTTTGTCGTGCTTCCTGTTTGAATAGCACAAAAACAAGCCGATGAATTCCGGCTGGTGGCCGTGGAGCTTCGTACGGAACTATTTCATTGCCTGAAACAAAAAGAGTGTGCCTCTCTGATATCCTTGGGATGAGCCAGATGAGAGGATCAGGCGTGCTTCATGTATGCACTACCGAAGTTTTTCATGCATATATTCCCCAAAGATCTGGAGGTATGTTTAAAGCTCCAAGAGTTAGCCTCCCCTGCATGGCGCCTTGCCTGGGCTAGGCCAAAGGTTTACGATGAGTCATTTCGTGTTCAATGATACTTCTCTGAGTGGGTGAGCACTCAGCTGGAGAGAGAATCTTTTGATCGACATCACAATGCAAGAGTATGAAACCTGGGGAGGTAGAGGCAGTGCAAAGGAAAAAGATTA]

[+] EMBL CB632234             [GCCTCTTCGTCGATGAGCTCGCCATGGCGCCCTGCCGAACCCTATCTACGCCGCCGCGGTAGCAGGGTTCAGGGCCGCAGGCGCGGACTAGGCGAAGAAGGGCCGTCCCCCGTTCATGGCGCTGCCGCGCGAGCGTCCCATTCCCCACTTTCTCGCCGGTCGCGATGAGCAGTAGGCCAGAGTCTGAAATGTGTTCGTCTCAGCCGGCTCAATCGTTCGGCGGGCGCTGACGTTGAAGTATAATGCAGCAACAGGTGGTCCAAGATTGTAAAATGCAGAGAAATCTCTGACGTTGAAATTTTGCCGCCATCCTGGAGCATAAACTGTTTGTCGTGCTTCCTGTTTGAATAGCACAAAAACAAGCCGATGAATTCCGGCTGGTGGCCGTGGAGCTTCGTACGGAACTATTTCATTGCCTGAAACAAAAAGAGTGTGCCTCTCTGATATCCTTGGGATGAGCCAGATGAGAGGATCAGGCGTGCTTCATGTATGCACTACCGAAGTTTTTCATGCATATATTCCCCAAAGATCTGGAGGTATGTTTAAAGCTCCAAGAGTTAGCCTCCCCTGCATGGCGCCTTGCCTGGGCTAGGCCAAAGGTTTACGATGAGTCATTTCGTGTTCAATGATACTTCTCTGAGTGGGTGAGCACTCAGCTGGAGAGAGAATCTTTTGATCGACATCACAATGCAAGAGTATGAAACCTGGGGAGGTAGAGGCAGTGCAAAGGAAAAAGATTA]


>consensus_7542#2 GCCTCTTCGTCGATGAGCTCGCCATGGCGCCCTGCCGAACCCTATCTACGCCGCCGCGGT AGCAGGGTTCAGGGCCGCAGGCGCGGACTAGGCGAAGAAGGGCCGTCCCCCGTTCATGGC GCTGCCGCGCGAGCGTCCCATTCCCCACTTTCTCGCCGGTCGCGATGAGCAGTAGGCCAG AGTCTGAAATGTGTTCGTCTCAGCCGGCTCAATCGTTCGGCGGGCGCTGACGTTGAAGTA TAATGCAGCAACAGGTGGTCCAAGATTGTAAAATGCAGAGAAATCTCTGACGTTGAAATT TTGCCGCCATCCTGGAGCATAAACTGTTTGTCGTGCTTCCTGTTTGAATAGCACAAAAAC AAGCCGATGAATTCCGGCTGGTGGCCGTGGAGCTTCGTACGGAACTATTTCATTGCCTGA AACAAAAAGAGTGTGCCTCTCTGATATCCTTGGGATGAGCCAGATGAGAGGATCAGGCGT GCTTCATGTATGCACTACCGAAGTTTTTCATGCATATATTCCCCAAAGATCTGGAGGTAT GTTTAAAGCTCCAAGAGTTAGCCTCCCCTGCATGGCGCCTTGCCTGGGCTAGGCCAAAGG TTTACGATGAGTCATTTCGTGTTCAATGATACTTCTCTGAGTGGGTGAGCACTCAGCTGG AGAGAGAATCTTTTGATCGACATCACAATGCAAGAGTATGAAACCTGGGGAGGTAGAGGC AGTGCAAAGGAAAAAGATTA



consensusID : consensus_7542#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence
                              [TTTTTTAAAAAGAATTCAGATTGATATATGTATGTGCTAATTGGTTCATTTTAAAGTAGAGAACACCAACGTGCACTATTCCTCATAATTACTGATATGAACATCAGCATTAATAGGTGACTATGAAGATATTGGACTTCTAATTTATTTCATACAATACAAGTCAATTACTAGACTACTTGATGGTCAACGCTATATATATGCTGTTAACTGCGTTTGGTGCATTATATTTNGTAATCTTGAATGATGTTGCATCCAGCCTTCAACTGGGTCCCTGAAACCTTCTGCCACCAACACCACTCTCCTTCTGGCAGTTGAAGTATAATGCAGCAACAGGGTGGTCCAAGATGGTAAAATGCAGAGAAATCTCTGACGTTGAAATTTGGCCGCCATCCGTGGAGCATAAACGGTTTGTCGTGCTTCCGTGTTGGAATAGCACAAAAACAAGCCGATGAATTCCGGCTGGTGGCGTGGAGCTTCGTACGGAACTATTTCATGTGCAAAACGTGCATCTATGGNCTCTGGGATGTCGTGTCCACCAACCAAAGCAAATATTCCCTG]

[-] EMBL BM418838             [TTTTTTAAAAAGAATTCAGATTGATATATGTATGTGCTAATTGGTTCATTTTAAAGTAGAGAACACCAACGTGCACTATTCCTCATAATTACTGATATGAACATCAGCATTAATAGGTGACTATGAAGATATTGGACTTCTAATTTATTTCATACAATACAAGTCAATTACTAGACTACTTGATGGTCAACGCTATATATATGCTGTTAACTGCGTTTGGTGCATTATATTTNGTAATCTTGAATGATGTTGCATCCAGCCTTCAACTGGGTCCCTGAAACCTTCTGCCACCAACACCACTCTCCTTCTGGCAGTTGAAGTATAATGCAGCAACAGGGTGGTCCAAGATGGTAAAATGCAGAGAAATCTCTGACGTTGAAATTTGGCCGCCATCCGTGGAGCATAAACGGTTTGTCGTGCTTCCGTGTTGGAATAGCACAAAAACAAGCCGATGAATTCCGGCTGGTGGCGTGGAGCTTCGTACGGAACTATTTCATGTGCAAAACGTGCATCTATGGNCTCTGGGATGTCGTGTCCACCAACCAAAGCAAATATTCCCTG]


>consensus_7542#3 TTTTTTAAAAAGAATTCAGATTGATATATGTATGTGCTAATTGGTTCATTTTAAAGTAGA GAACACCAACGTGCACTATTCCTCATAATTACTGATATGAACATCAGCATTAATAGGTGA CTATGAAGATATTGGACTTCTAATTTATTTCATACAATACAAGTCAATTACTAGACTACT TGATGGTCAACGCTATATATATGCTGTTAACTGCGTTTGGTGCATTATATTTNGTAATCT TGAATGATGTTGCATCCAGCCTTCAACTGGGTCCCTGAAACCTTCTGCCACCAACACCAC TCTCCTTCTGGCAGTTGAAGTATAATGCAGCAACAGGGTGGTCCAAGATGGTAAAATGCA GAGAAATCTCTGACGTTGAAATTTGGCCGCCATCCGTGGAGCATAAACGGTTTGTCGTGC TTCCGTGTTGGAATAGCACAAAAACAAGCCGATGAATTCCGGCTGGTGGCGTGGAGCTTC GTACGGAACTATTTCATGTGCAAAACGTGCATCTATGGNCTCTGGGATGTCGTGTCCACC AACCAAAGCAAATATTCCCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      CGCGGTCGCCGCCGCAAGGTTTATCTCCTCCGCGAGGCCGCGACCTGACGCCGCCGCCGC 60
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      CGGCGGCCGCCGCCTCGTCGTCGATGAGCTCGCCATGGCGCCCTGCCGAACCCTATCTAC 120
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      GCCGCCGCGGTAGCAGGGTTCAGATTCTGCAGGGCCGCAGGCGCGGACTAGGCGAAGAAG 180
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      GGCCGTCCCCCGTTCATGGCACTGCCGCGCGAGCGTCCCATTCCCCACTTTCTCGCCGGT 240
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      CGCGATGAGCAGTAGGCCAGAGTCTGAAATGTGTTCGTCTCAGCCGGCTCAATCGTTCGG 300
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      CGGGCGCTGACGTTGAAGTATAATGCAGCAACAGGTGGTCCAAGATTGTAAAATGCAGAG 360
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      AAATCTCTGACGTTGAAATTTTGCCGCCATCCTGGAGCATAAACTGTTTGTCGTGCTTCC 420
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      TGTTTGAATAGCACAAAAACAAGCCGATGAATTCCAGCCGGTGGCCGTGGAGCTTCGTAC 480
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      GGAACTATTTCATTGCCTGAAACAAAAAGAGTGTGCCTCTCTGATATCCTTGGGATGAGC 540
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      CAGATGAGAGGATCAGGCGTGCTTCATGTATGCACTACCGAAGAGGAAAAAGATTAATGC 600
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      ATGTCTGGGAACAAGTTATTCACTGTGGACACTTCTGTTACAGGCATGCAGGTACAACTT 660
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      TCCTTGTCCACTAAATACAGCTGTACAGGATCATTCGGACCAAACAGGAACAGCACTTAA 720
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ---------------------------------------------------TTTTTTAAA 9
consensus_7542#0      AATCCAGTTGCACACAGAAGTTTCACCTTTGATGCTACAAACGGGCATTGGACTTTTCGA 780
consensus_7542#1      ------------------------------------------GGGCATTGGACTTTTCGA 18
                                                                                  

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      AAGAATTCAGATTGATATATGTATGTGCTAATTGGTTCATTTTAAAGTAGAGAACACCAA 69
consensus_7542#0      AGGACGGAGGATGGATAC---CATCACACTATGGGGTTGTGTTCAAGAACACCACATGTA 837
consensus_7542#1      AGGACGGAGGATGGATAC---CATCACACTATGGGGTTGTGTTCAAGAACACCACATGTA 75
                                                                                  

consensus_7542#2      ----------GCCTCTTCGTCGATGAGCTCGCCAT-GGCGCCC-TGCCGAACCCTATCTA 48
consensus_7542#3      CGTGCACTATTCCTCATAATTACTGATATGAACATCAGCATTAATAGGTGACTATGAAGA 129
consensus_7542#0      GCTGC-CTTTGCTCTCCATTCAAAAACATCACATGCGACTGCCTCGGCTCTCCACATAAA 896
consensus_7542#1      GCTGC-CTTTGCTCTCCATTCAAAAACATCACATGCGACTGCCTCGGCTCTCCACATAAA 134
                                 *       *     *  *         *            *       *

consensus_7542#2      CGCCGCCGCGGTAGCAGGGTTCAGG-GCCGCAGG-CGCGGACTAGGCGAA--GAAGGGCC 104
consensus_7542#3      TATTGGACTTCTAATTTATTTCATACAATACAAGTCAATTACTAGACTACTTGATGGTCA 189
consensus_7542#0      CATCAATGTCG-AGAATGCCATGAAGAATCCATGCAGATTTTAATATTTTTCAGCTGGGA 955
consensus_7542#1      CATCAATGTCG-AGAATGCCATGAAGAATCCATGCAGATTTTAATATTTTTCAGCTGGGA 193
                                  *                 ** *         *            *   

consensus_7542#2      GTCCCCC-GTTCATGGCGC-TG-CCGCGC---GAGCGTCCCATTCCC-CACTT------- 150
consensus_7542#3      ACGCTAT-ATATATGCTGT-TAACTGCGTTTGGTGCATTATATTTNG-TAATC------- 239
consensus_7542#0      ATACAGTGAGGCAAGGAATATACTCGACATCCAAAAATCTTGTTGGAATAAAGGTACAGT 1015
consensus_7542#1      ATACAGTGAGGCAAGGAATATACTCGACATCCAAAAATCTTGTTGGAATAAAG------- 246
                         *        * *     *    *           *    **     *          

consensus_7542#2      ------------------------------------------------------------
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      CTTCAGATCAGATGAGCATCTCCACCAGGGCACTGCATGGCTGCAACCAGAAAAGCTGAA 1075
consensus_7542#1      ------------------------------------------------------------
                                                                                  

consensus_7542#2      ------------------------T---CTCGCCG--GTCGCGATGAGCAGTAGGCCAGA 181
consensus_7542#3      ------------------------T---TGAATGAT-GTTGCATCCAGCCTTCAACTGGG 271
consensus_7542#0      AGATTAACTTTGAATTGTTGAAAGCTCTTGCATGTCAGTCACAAAAGGGGGGAAAAGGCA 1135
consensus_7542#1      ------------------------CTCTTGCATGTCAGTCACAAAAGGGGGGAAAAGGCA 282
                                                           **  *     *            

consensus_7542#2      GTCTGAAATGTGTTCGTCTCAGCCGGCTCAATCGTTCGGCGGGCGC-TGACGTTGAA--- 237
consensus_7542#3      TCCCTGAAACCTTCTGCC---ACCAACACCACTCTCCTTCTGGCA------GTTGAA--- 319
consensus_7542#0      CCAAGGAATTTCCCCGC----ACTGCAAACAACCTACACCCAGCTTCTGTGGATGAACTC 1191
consensus_7542#1      CCAAGGAATTTCCCCGC----ACTGCAAACAACCTACACCCAGCTTCTGTGGATGAACTC 338
                            **       *      *       *   * *  *  **       * ****   

consensus_7542#2      GTATAATGC-AGCAACAGG-TGGTCCAAGATTGTAAAATGCAGAGAAATC--TCTGACGT 293
consensus_7542#3      GTATAATGC-AGCAACAGGGTGGTCCAAGATGGTAAAATGCAGAGAAATC--TCTGACGT 376
consensus_7542#0      GTGCCATGCCAGTATGC-CACCGTCCCTGCTGCCTCAGGCCCCTCT------------AG 1238
consensus_7542#1      GTGCCATGCCAGTGAGAGCTGAATCTATTCTGATGGGGAGCAATCTTATCATTTTGACAG 398
                      **   **** **           **     *         *                   

consensus_7542#2      TGAAATTTTGCCGCCATCC-TGGAGCATAAACTGTTTGTCG--TGCTTCC-TGTTTGA-A 348
consensus_7542#3      TGAAATTTGGCCGCCATCCGTGGAGCATAAACGGTTTGTCG--TGCTTCCGTGTTGGA-A 433
consensus_7542#0      ATTGTTCGTGGACCAGCTGGAAACTGTGCTAAAGCTGATCTGAT----CTCCAGGTGATA 1294
consensus_7542#1      CATGCATCTGAAGGTGCTAGTGGATAAGTGGAAGCTTACTGAATACTCTTTTCTGTGATA 458
                               *                       * *       *            ** *

consensus_7542#2      TAGCACAAAAACAA-----GCCGATGAATTCCGGCT--GGTGGCCGTGGAGCTTCGTACG 401
consensus_7542#3      TAGCACAAAAACAA-----GCCGATGAATTCCGGCT--GGTGGC-GTGGAGCTTCGTACG 485
consensus_7542#0      CATGACAAGCTTCGTTGCTGCAGAAGAATGCAGGGTCAGGTGACCTGGAAAGATTGATGA 1354
consensus_7542#1      CATGACAAGCTTCGTTGCTGCAGAAGAATGCAGGGTCAGGTGACCTGGAAAGATTGATGA 518
                       *  ****           ** ** **** * ** *  **** *   * *   * *    

consensus_7542#2      GAACTATTTCA---TTGCCTGAAACAAAAAGAGTGTGCCTCTCTGATATCCTTGGGATGA 458
consensus_7542#3      GAACTATTTCA---T-GTGCAAAACGTGCATCTATGGNCTCTGGGATGTCGTGTCCACCA 541
consensus_7542#0      GAAGAATTTGAGAATCTTGTACAGCAAATTGGATGGAGATAAGGTGAATGGCTGCGGTCC 1414
consensus_7542#1      GAAGAATTTGAGAATCTTGTACAGCAAATTGGATGGAGATTAGGTGAATGGCTGCGGTCC 578
                      ***  **** *   *       * *              *        *           

consensus_7542#2      GCCAGATGAGAGGATCAGGCGTGCTTCATGTATGCACTACCGAAGTTTTTCATGCATATA 518
consensus_7542#3      ACCAAAGCAAATATTC---CCTG------------------------------------- 561
consensus_7542#0      ACTTCAAAGGTGAACTGGGACCAGC-CGTGCATACAGAAACAACGTCTCTCATTTGTCCC 1473
consensus_7542#1      ACTTCAAAGGTGAACTGGGACCAGC-CGTGCATACAGAAACAACGTCTCTCATTTGTCCC 637
                       *   *                                                      

consensus_7542#2      TTCCCCAAAGATCTGGAGGTATGTTTAAAGCTCCAAGAGTTAGCCTCCCCTGCATGGC-- 576
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      GGTGCCTGCATAAACAATGTGAGCGTGAACGTCAAAGTGAAGCTCAACACAGTTCTTCTG 1533
consensus_7542#1      GGTGCCTGCATAAACAATGTGAGCGTGAACGTCAAAGTGAAGCTCAACACAGTTCTTCTG 697
                                                                                  

consensus_7542#2      GCCTTGCCTGGGCTAGGCCAAAGGTTTACGATGAGTCATTTCGTGTTCAATGATACTTCT 636
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      ATACTCTCTCTTGTTGGTCCATATTATAAGGTGTTCTGTTTTTCATAAGTCAAACTTCTC 1593
consensus_7542#1      ATACTCTCTCTTGTTGGTCCATATTATAAGGTGTTCTGTTTTTCATAAGTCAAACTTCTC 757
                                                                                  

consensus_7542#2      CTGAGTGGGTGAGCACTCAGCTGGAGAGAGAATCTTTTGATCGACATCACAATGCAAGAG 696
consensus_7542#3      ------------------------------------------------------------
consensus_7542#0      CAACATTGAT-------------------------------------------------- 1603
consensus_7542#1      CAACATTGATCAAGTTTATGAAAAAAAACACATCAATC---------------------- 795
                                                                                  

consensus_7542#2      TATGAAACCTGGGGAGGTAGAGGCAGTGCAAAGGAAAAAGATTA 740
consensus_7542#3      --------------------------------------------
consensus_7542#0      --------------------------------------------
consensus_7542#1      --------------------------------------------
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)