cluster # 7548

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Oryza sativa
cluster # 7548 cluster # 7548 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7548#0 length = 927 sequences # 3

consensus_7548#1 length = 209 sequences # 1

consensusID : consensus_7548#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 927
fasta sequence

                              [GCGTAGATCTCCCCCATTAGGCTCGTGTCGTGTGTCCGCCAGCTGCGCGCAGGCCGGCGACGAAGCTGCGTGCGCGCGGCAACGTCGGCCGGCCGCAGCAATGGCCCCGTTCATCGACCTCGGCCGCGGCGGGCCGACGGCGGCGCCGGGG-AAGCCGAGGCTGGTGATGATCATCGCCGACCCGGGGCGCGAGTCGACGGCGGCGATGGAGTGGGCGCTCTCGCACGCCGTCGCCGAGGGGGACGCCATCCTGCTCCTCCACATCAACATGCCCCCCAACTCCGCGGGCGGCGCCGGGCCGTCGCGCACCGGCTCCGGCGGGAGCGCCGGGTCCCCGCTCACGGCGCTCCTCGGCGCCGGCGCCGCGGGGGACGCCGATTTCATGGAGACGATGAGCGCCGCGTGCAAGGCGCGGCACCCGCGCGCCCGCGTCCGCGCCCTGCGCGTCGAGCCCGCCACCGAGGGCCGCGAGGCCAAGGCCCAGACCATCCTCGCCGAGTCCCAGCGCCGCGGCGTCGAGCTCCTCGTCATCGGCCACCGCCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAGCACGGCGGAGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGGGCAGAACGCCGGCTACCTGCTCAACACCAAGACGCACAAGAACTTTTGGCTCCTCGCTTGATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTTAATGGATCGAACAAAAGCTCCAAAAAC-TTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAATGCAGAAACAACGAATCGAGAAAAGCAAAATAAAGTGTTGTTTTGTTTTT]

[+] EMBL AK109194             [GCGTAGATCTCCCCCATTAGGCTCGTGTCGTGTGTCCGCCAGCTGCGCGCAGGCCGGCGACGAAGCTGCGTGCGCGCGGCAACGTCGGCCGGCCGCAGCAATGGCCCCGTTCATCGACCTCGGCCGCGGCGGGCCGACGGCGGCGCCGGGG AAGCCGAGGCTGGTGATGATCATCGCCGACCCGGGGCGCGAGTCGACGGCGGCGATGGAGTGGGCGCTCTCGCACGCCGTCGCCGAGGGGGACGCCATCCTGCTCCTCCACATCAACATGCCCCCCAACTCCGCGGGCGGCGCCGGGCCGTCGCGCACCGGCTCCGGCGGGAGCGCCGGGTCCCCGCTCACGGCGCTCCTCGGCGCCGGCGCCGCGGGGGACGCCGATTTCATGGAGACGATGAGCGCCGCGTGCAAGGCGCGGCACCCGCGCGCCCGCGTCCGCGCCCTGCGCGTCGAGCCCGCCACCGAGGGCCGCGAGGCCAAGGCCCAGACCATCCTCGCCGAGTCCCAGCGCCGCGGCGTCGAGCTCCTCGTCATCGGCCACCGCCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAGCACGGCGGAGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGGGCAGAACGCCGGCTACCTGCTCAACACCAAGACGCACAAGAACTTTTGGCTCCTCGCTTGATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTTAATGGATCGAACAAAAGCTCCAAAAAC TTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAATGCAGAAACAACGAATCGAGAAAAGCAAAATAAAGTGTTGTTTTGTTTTT]
[+] EMBL C73382               [                    GCTCGTNTCGTGTGTCCGCCAGCTGCGCGCAGGCCGGCNACGAAGCTGCGTGCGCGCGGCAACGTCGGCCGGCCGCAGCAATGGCCCCGTTNATCGACCTCGGCCGCGGCGGGCCGACGGCGGCGCCGGGGAAAGCCGAGGCTGGTNATGATCATCGCCGACCCGGGGCGCNATTCGACGGCGGCNATGGAGTNGGCGCTCTCGCACGCCGTCGCCGAGGGGGACGCCATCCTGCTCCTCCACATCAACATGCCCCCCAACTCCGCGGGCGGCGCCGGGCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU094301             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CATCGGCCACCGCCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAGCACGGCGGAGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGGGCAGAACGCCGGCTACCTGCTCAACACCAAGACGCACAAGAACTTTTGGCTCCTCGCTTGATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTTAATGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAATGCAAAAA                                          ]




>consensus_7548#0
GCGTAGATCTCCCCCATTAGGCTCGTGTCGTGTGTCCGCCAGCTGCGCGCAGGCCGGCGA
CGAAGCTGCGTGCGCGCGGCAACGTCGGCCGGCCGCAGCAATGGCCCCGTTCATCGACCT
CGGCCGCGGCGGGCCGACGGCGGCGCCGGGGAAGCCGAGGCTGGTGATGATCATCGCCGA
CCCGGGGCGCGAGTCGACGGCGGCGATGGAGTGGGCGCTCTCGCACGCCGTCGCCGAGGG
GGACGCCATCCTGCTCCTCCACATCAACATGCCCCCCAACTCCGCGGGCGGCGCCGGGCC
GTCGCGCACCGGCTCCGGCGGGAGCGCCGGGTCCCCGCTCACGGCGCTCCTCGGCGCCGG
CGCCGCGGGGGACGCCGATTTCATGGAGACGATGAGCGCCGCGTGCAAGGCGCGGCACCC
GCGCGCCCGCGTCCGCGCCCTGCGCGTCGAGCCCGCCACCGAGGGCCGCGAGGCCAAGGC
CCAGACCATCCTCGCCGAGTCCCAGCGCCGCGGCGTCGAGCTCCTCGTCATCGGCCACCG
CCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAG
CACGGCGGAGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGG
GCAGAACGCCGGCTACCTGCTCAACACCAAGACGCACAAGAACTTTTGGCTCCTCGCTTG
ATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTTAA
TGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGT
CAGACACGATCGATCAATCGAGTTAATTCTTCATTAATGCAGAAACAACGAATCGAGAAA
AGCAAAATAAAGTGTTGTTTTGTTTTT

consensusID : consensus_7548#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [GCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTNAATGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAAANNAANANNGAAANNAANAAAAANTANNC]

[+] EMBL AU094159             [GCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTNAATGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAAANNAANANNGAAANNAANAAAAANTANNC]




>consensus_7548#1
GCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTNAATGGATCGAACAAAAG
CTCCAAAAACTTTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGTGTCAGACACGATCGA
TCAATCGAGTTAATTCTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAA
ANNAANANNGAAANNAANAAAAANTANNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7548#0      GCGTAGATCTCCCCCATTAGGCTCGTGTCGTGTGTCCGCCAGCTGCGCGCAGGCCGGCGA 60
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      CGAAGCTGCGTGCGCGCGGCAACGTCGGCCGGCCGCAGCAATGGCCCCGTTCATCGACCT 120
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      CGGCCGCGGCGGGCCGACGGCGGCGCCGGGGAAGCCGAGGCTGGTGATGATCATCGCCGA 180
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      CCCGGGGCGCGAGTCGACGGCGGCGATGGAGTGGGCGCTCTCGCACGCCGTCGCCGAGGG 240
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      GGACGCCATCCTGCTCCTCCACATCAACATGCCCCCCAACTCCGCGGGCGGCGCCGGGCC 300
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      GTCGCGCACCGGCTCCGGCGGGAGCGCCGGGTCCCCGCTCACGGCGCTCCTCGGCGCCGG 360
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      CGCCGCGGGGGACGCCGATTTCATGGAGACGATGAGCGCCGCGTGCAAGGCGCGGCACCC 420
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      GCGCGCCCGCGTCCGCGCCCTGCGCGTCGAGCCCGCCACCGAGGGCCGCGAGGCCAAGGC 480
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      CCAGACCATCCTCGCCGAGTCCCAGCGCCGCGGCGTCGAGCTCCTCGTCATCGGCCACCG 540
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      CCGCGTCTCCTCCTTCCTCGGGTTGAGGAGCCCGAGCGGGTCGAGCCGAGCGCACGACAG 600
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      CACGGCGGAGTTCTTGATCGAACACAGCAAGTGCGTGTGCGTGAGTGTGCAGAAGAAGGG 660
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      GCAGAACGCCGGCTACCTGCTCAACACCAAGACGCACAAGAACTTTTGGCTCCTCGCTTG 720
consensus_7548#1      ------------------------------------------------------------
                                                                                  

consensus_7548#0      ATCATGATCATCACGGCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTTAA 780
consensus_7548#1      ---------------GCCTAGATAGTGATCCACACATCCATGCAGCTTCATATATGTNAA 45
                                     ****************************************** **

consensus_7548#0      TGGATCGAACAAAAGCTCCAAAAACTTTTTTTTT--GATTCTTCTCGCAGCAATGCTTGT 838
consensus_7548#1      TGGATCGAACAAAAGCTCCAAAAACTTTTTTTTTTTGATTCTTCTCGCAGCAATGCTTGT 105
                      **********************************  ************************

consensus_7548#0      GTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAATGCAGAAACAACGAATCGAGA 898
consensus_7548#1      GTCAGACACGATCGATCAATCGAGTTAATTCTTCATTAAAAAAAAAAAAAAAAAAAAAAA 165
                      ***************************************   * *** **  **   * *

consensus_7548#0      AAAGCAAAATAAAGTGTTGTT-TTGTTTTT-------------- 927
consensus_7548#1      AAAAAAAANAANAAAANNAANANNGAAANNAANAAAAANTANNC 209
                      ***  ***  * *           *