These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1150 fasta sequence [GCGGCGCCGCCCAGGGCCGGGAACCAGGCGGTGTCGCTCCGCGAGGAGAGCTCCGGGAAGACGCGCGCTGACGCGGCCTCCCTGCTGAGGGTCCAGCACCTGCAACGCCGAGGCGGCCGGGATACCTCTGGCCGCCTCCACCTTCCTATGCCAGAGGTGTGAAACAGTCTTACAGCCAGGCTTCAACTGCACAATCCGCATAAAGAACAACAAAAGAAAAGCAAAGCGACGCAAGAAGTTAAACACTTGCCAGAACAGCATTTCTTACCTGTGCCATTTCTGTGGAGACCAAAACCTAATAAGGGGCAGCGGAAAGAATATTATGAAGGGCTTGTTATCATCAAGAAAGCCAGTTGGCATGGATGTAACCAGCATAAAGTTGAAAGGGGACAGTAATAACAAGAGATTAGTAACTATAAAAGAGGGCTTTGAATATTCTCAGGCAGCGGTCTCACAACTAGAGTCAACATCTGGGTTGAAACAACAAAATCTTGAAAAGAATGAGTATGAGGAAAGTCCAGTACCCAATCTTCTTGACGAATCTATGGAAAAGGAGGTAGCGTGTTCATCGGTGGAACTGAATCAGTCAGCATCAGCTACTGATCAGGAGAATGTCTCACAGAAAATAGTGGTAACAATCACAAGTGAAAAAGGTATGCATGAAACTGAGCCTGTTTCTGCTAACAAAATTGCAATATGCCAACCCGATTTTCCTTCAAAAGCAGAATTTCCAGTCGGATCAAGTTTTGTTACTCCTCGAAAGAACAAACTGGTGGATGTGACGGACCATAAGGATTCTGCAGAACTGGTCAAGACAAGAAGCATTCAGAACAAGAAAGGGGAGATGCCAAGTTCAGTTACTGGCAAGGCCCCTACAATGCCTACCAAGTCAGCTCCAAAGGACCGTGTGAAAAATAAATCTGTAGCAAGTGGTTCTGCTCAGATGTCTGGTAGTTCAAGGAAGCGGGCAAGAAAGGGGTGGACTACGCTGAAACAGATTGCTGAAAAGGAAGAGCTTGAGAGAAAAGAGAAGATGGGTAAC-TTTGTAATACCATTC-TTTATGCAATAAGAGATGTTACAACTCACGCTGATTGTAAGCTTTATTCTTGGTGTATTTGTTGAGAATAGCATACAAAATTTTGATCATATT] [+] EMBL AK071815 [GCGGCGCCGCCCAGGGCCGGGAACCAGGCGGTGTCGCTCCGCGAGGAGAGCTCCGGGAAGACGCGCGCTGACGCGGCCTCCCTGCTGAGGGTCCAGCACCTGCAACGCCGAGGCGGCCGGGATACCTCTGGCCGCCTCCACCTTCCTATGCCAGAGGTGTGAAACAGTCTTACAGCCAGGCTTCAACTGCACAATCCGCATAAAGAACAACAAAAGAAAAGCAAAGCGACGCAAGAAGTTAAACACTTGCCAGAACAGCATTTCTTACCTGTGCCATTTCTGTGGAGACCAAAACCTAATAAGGGGCAGCGGAAAGAATATTATGAAGGGCTTGTTATCATCAAGAAAGCCAGTTGGCATGGATGTAACCAGCATAAAGTTGAAAGGGGACAGTAATAACAAGAGATTAGTAACTATAAAAGAGGGCTTTGAATATTCTCAGGCAGCGGTCTCACAACTAGAGTCAACATCTGGGTTGAAACAACAAAATCTTGAAAAGAATGAGTATGAGGAAAGTCCAGTACCCAATCTTCTTGACGAATCTATGGAAAAGGAGGTAGCGTGTTCATCGGTGGAACTGAATCAGTCAGCATCAGCTACTGATCAGGAGAATGTCTCACAGAAAATAGTGGTAACAATCACAAGTGAAAAAGGTATGCATGAAACTGAGCCTGTTTCTGCTAACAAAATTGCAATATGCCAACCCGATTTTCCTTCAAAAGCAGAATTTCCAGTCGGATCAAGTTTTGTTACTCCTCGAAAGAACAAACTGGTGGATGTGACGGACCATAAGGATTCTGCAGAACTGGTCAAGACAAGAAGCATTCAGAACAAGAAAGGGGAGATGCCAAGTTCAGTTACTGGCAAGGCCCCTACAATGCCTACCAAGTCAGCTCCAAAGGACCGTGTGAAAAATAAATCTGTAGCAAGTGGTTCTGCTCAGATGTCTGGTAGTTCAAGGAAGCGGGCAAGAAAGGGGTGGACTACGCTGAAACAGATTGCTGAAAAGGAAGAGCTTGAGAGAAAAGAGAAGATGGGTAAC TTTGTAATACCATTC TTTATGCAATAAGAGATGTTACAACTCACGCTGATTGTAAGCTTTATTCTTGGTGTATTTGTTGAGAATAGCATACAAAATTTTGATCATATT] [+] EMBL CA765530 [ annCAAGAGATTNGTAACTATAAAAGAGGGCTTTGAATATTCTCAGGCAGCGGTCTCACAACTAGAGTCAACATCTGGGTTGAAACAACAAAATCTTGAAAAGAATGAGTATGAGGAAAGTCCAGTACCCAATCTTCTTGACGAATCTATGGAAAAGGAGGTAGCGNGTTCATCGGTGGAACTGAATCAGTCAGCATCAGCTACTGATCAGGAGAATGTCTCACAGAAAATAGTGGTAACAATCACAAGTGAAAAAGGTATGCATGAAACTGAGCCTGTTTCTGCTAACAAAATTGCAATATGCCAACCCGATTTTCCTTCAAAAGCAGAATTTCCAGTCGGATCAAGTTTTGTTACTCCTCGAAAGAACAAACTGGTGGATGTGACGGACCATAAGGATTCTGCAGAACTGGTCAAGACAAGAAGCATTCAGAACAAGAAAGGGGAGATGCCAAGTTCAGTTACTGGCAAGGCCCCTACAATGCCTACCAAGTCAGCTTCAAAGGACCGNGTGAAAAATAAATCTGTAGCAAGTGGNTCTGCTCANATGTCTGGTAGTTCAAGGAAGCGGGCAAGAAANGGGNGGACTACNCTGAAACAGATTGCTGAAAAGGAANAGCTTGAGAGAAAANANAANATGGGGAACTTTTGTAATANCATTCNTTTATGCAATAAGAGATGGTACAACTCACGCTGATTGNAAGCTTTATTCTTGGGGNATTTGGTGAGAANA CNTACAAAATTTTGATCATt ] consensusID : consensus_7559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [AGACCCACTCGCCGTCGCCGCCGCCGCCTCCGCCTACTCCCTCCCGCGCCGCCGCCCTCCGGTTGTCTTCCTCGCGGTTGCGGCTTGGCGGCTACATGGGGAAGAAGCGCGGTGGCCATGGCCATGCCCCGGCGGCGCCGCCCAGGGCCGGGAACCAGGCCGTGTCGCTCCGCGAGGAGAGCTCCGGGAAGACGCGCGCCGACGCGGCCTCCCTGCTGAGGGTCCAGCACCTGCAGCGGCTGGCGGCGTGGGCGGGCGGGGAGGCCAGGGTGGGCCCCCTCGGCGCCCTGCTGGGGCGACGCCTCGCCGCCAACGCCGAGGCGGCCGGGATACCTCTGGCCGCCTCCACCTTCCTATGCCAGAGGTGTGAAACAGTCTTACAGCCAGGCTTCAACTGCACCATCCGCATAAAGAACAACAAAAGAAAAGCAAAGCGACGCAAGAAGTTAAACACTTGCCAGAACAGCATTTCCTACCTGTGCCATTTCTGTGGAGACCAAAACCTAATAAGGGGCAGCGGAAAGAATATTATGAAGGGCTTGTTATCATTAAGAAAGCCAGTTGGCATGGATGTTACCAGCATTAAGTTGAAAGGGGACATAAATAACAAGAGATTAGTAACTATAAAAGAGGGCTTGGAATATTCTCAAGGAGCAGTCTCACAACTAGAGTCAACATCTGGGTTGAAACAACGAAATCTTGTAAAGAACGAGTATGAGGAGAGCCCAGTACCCA] [+] EMBL CB656252 [AGACCCACTCGCCGTCGCCGCCGCCGCCTCCGCCTACTCCCTCCCGCGCCGCCGCCCTCCGGTTGTCTTCCTCGCGGTTGCGGCTTGGCGGCTACATGGGGAAGAAGCGCGGTGGCCATGGCCATGCCCCGGCGGCGCCGCCCAGGGCCGGGAACCAGGCCGTGTCGCTCCGCGAGGAGAGCTCCGGGAAGACGCGCGCCGACGCGGCCTCCCTGCTGAGGGTCCAGCACCTGCAGCGGCTGGCGGCGTGGGCGGGCGGGGAGGCCAGGGTGGGCCCCCTCGGCGCCCTGCTGGGGCGACGCCTCGCCGCCAACGCCGAGGCGGCCGGGATACCTCTGGCCGCCTCCACCTTCCTATGCCAGAGGTGTGAAACAGTCTTACAGCCAGGCTTCAACTGCACCATCCGCATAAAGAACAACAAAAGAAAAGCAAAGCGACGCAAGAAGTTAAACACTTGCCAGAACAGCATTTCCTACCTGTGCCATTTCTGTGGAGACCAAAACCTAATAAGGGGCAGCGGAAAGAATATTATGAAGGGCTTGTTATCATTAAGAAAGCCAGTTGGCATGGATGTTACCAGCATTAAGTTGAAAGGGGACATAAATAACAAGAGATTAGTAACTATAAAAGAGGGCTTGGAATATTCTCAAGGAGCAGTCTCACAACTAGAGTCAACATCTGGGTTGAAACAACGAAATCTTGTAAAGAACGAGTATGAGGAGAGCCCAGTACCCA] consensusID : consensus_7559#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [CAGCATCAGCTACTGATGAGGAAAATGTCTCACAGAAAATAGTAGTAACAATCCCAAATGAAAAAAGTACGCATGAAACTGAGCCTGTTTTTGCTAACAAAATTGCAATATGCCAACCCGATGTTCCTTCGAAAGCAGAATTTTCAGTTGGATCAAGTTTTGTTACTCCTCGAAAGAACAAAGTGGTGGATGTGACGGACCATAAGGATTTTGCAGAACTGCTCAAGACAAGAAGCATTCAGAACAAGAAAGCGGAGATGCCAAGTTCAGTTACTGGCAAGGCCCCTACAATGCCTACCAAGTCAGCTCCAAACGATAGTATGAAAAATAAACCTGTAGCAATTGGTTTTGCTCAGATGTTTGGTAGTTCAAGGAAGCGGGCAAGAAAGGGGTGGACTACGTTAAAACAGATTGCTGAAAAGGAAGAGCTTGAGAGAAAAGAGAAGATGGGTAACTTTGTAATTCCATTTTTTATGCAATAAGAGATTTTACTACTCACGCCAAATGTAAAGTTTATAGTTGGTGTATTTGTTGAGAATTGCATACAAAAATTGTGATCATATTTTGAGTTGCTAAAATTTGAACCATCACGCAGTGTAAACGAAACATGAACTGCCCAGAGGTTAAGTGGGGGAAAAATATCTTAACGAAAGGGTTCGGGTATAAAAAAAAAAAAAAAAAAAAAAAATAAAAAGG] [-] EMBL CB656253 [CAGCATCAGCTACTGATGAGGAAAATGTCTCACAGAAAATAGTAGTAACAATCCCAAATGAAAAAAGTACGCATGAAACTGAGCCTGTTTTTGCTAACAAAATTGCAATATGCCAACCCGATGTTCCTTCGAAAGCAGAATTTTCAGTTGGATCAAGTTTTGTTACTCCTCGAAAGAACAAAGTGGTGGATGTGACGGACCATAAGGATTTTGCAGAACTGCTCAAGACAAGAAGCATTCAGAACAAGAAAGCGGAGATGCCAAGTTCAGTTACTGGCAAGGCCCCTACAATGCCTACCAAGTCAGCTCCAAACGATAGTATGAAAAATAAACCTGTAGCAATTGGTTTTGCTCAGATGTTTGGTAGTTCAAGGAAGCGGGCAAGAAAGGGGTGGACTACGTTAAAACAGATTGCTGAAAAGGAAGAGCTTGAGAGAAAAGAGAAGATGGGTAACTTTGTAATTCCATTTTTTATGCAATAAGAGATTTTACTACTCACGCCAAATGTAAAGTTTATAGTTGGTGTATTTGTTGAGAATTGCATACAAAAATTGTGATCATATTTTGAGTTGCTAAAATTTGAACCATCACGCAGTGTAAACGAAACATGAACTGCCCAGAGGTTAAGTGGGGGAAAAATATCTTAACGAAAGGGTTCGGGTATAAAAAAAAAAAAAAAAAAAAAAAATAAAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7559#0 GCGGCGCCGCCCAGGGCCGGGAACCAGGCGGTGTCGCTCCGCGAGGAGAGCTCCGGGAAG 60 consensus_7559#2 ------------------------------------------------------------ consensus_7559#1 ------------------------------------------------------------ consensus_7559#0 ACGCGCGCTGACGCGGCCTCCCTGCTGAGGGTCCAGCACCTGCAACGCCGAGGCGGCCGG 120 consensus_7559#2 ------------------------------------------------------------ consensus_7559#1 ------------------------------------------------------------ consensus_7559#0 GATACCTCTGGCCGCCTCCACCTTCCTATGCCAGAGGTGTGAAACAGTCTTACAGCCAGG 180 consensus_7559#2 ------------------------------------------------------------ consensus_7559#1 ------------------------------------------------------------ consensus_7559#0 CTTCAACTGCACAATCCGCATAAAGAACAACAAAAGAAAAGCAAAGCGACGCAAGAAGTT 240 consensus_7559#2 ------------------------------------------------------------ consensus_7559#1 ------------------------------------------------------------ consensus_7559#0 AAACACTTGCCAGAACAGCATTTCTTACCTGTGCCATTTCTGTGGAGACCAAAACCTAAT 300 consensus_7559#2 ------------------------------------------------------------ consensus_7559#1 ------------------------------------------------------------ consensus_7559#0 AAGGGGCAGCGGAAAGAATATTATGAAGGGCTTGTTATCATCAAGAAAGCCAGTTGGCAT 360 consensus_7559#2 ------------------------------------------------------------ consensus_7559#1 ------------------------------------------------------------ consensus_7559#0 GGATGTAACCAGCATAAAGTTGAAAGGGGACAGTAATAACAAGAGATTAGTAACTATAAA 420 consensus_7559#2 ------------------------------------------------------------ consensus_7559#1 ------------------------------------------------------------ consensus_7559#0 AGAGGGCTTTGAATATTCTCAGGCAGCGGTCTCACAACTAGAGTCAACATCTGGGTTGAA 480 consensus_7559#2 ------------------------------------------------------------ consensus_7559#1 ------------------------------------------------------------ consensus_7559#0 ACAACAAAATCTTGAAAAGAATGAGTATGAGGAAAGTCCAGTACCCAATCTTCTTGACGA 540 consensus_7559#2 ------------------------------------------------------------ consensus_7559#1 ------------------------------------------------------------ consensus_7559#0 ATCTATGGAAAAGGAGGTAGCGTGTTCATCGGTGGAACTGAATCAGTCAGCATCAGCTAC 600 consensus_7559#2 -----------------------------------------------CAGCATCAGCTAC 13 consensus_7559#1 ------------------------------------------------AGACCCACTCGC 12 ** ** * consensus_7559#0 TGATCAGGAGAATGTCTCACAGAAAATAGTGGTAACAATCACAAGTGAAAAAGGTATGCA 660 consensus_7559#2 TGATGAGGAAAATGTCTCACAGAAAATAGTAGTAACAATCCCAAATGAAAAAAGTACGCA 73 consensus_7559#1 CGTCGCCGCCGCCGCCTC-CGCCTACTCCCTCCCGCGCCGCCGCCCTCCGGTTGTCTTCC 71 * * * *** * * * * * ** * consensus_7559#0 T-GAAACTGAGCCTGTTTCTGCTA-ACAAAATTGCAATATGCCAACC-CGATTTTCCTTC 717 consensus_7559#2 T-GAAACTGAGCCTGTTTTTGCTA-ACAAAATTGCAATATGCCAACC-CGATGTTCCTTC 130 consensus_7559#1 TCGCGGTTGCGGCT-TGGCGGCTACATGGGGAAGAAGCGCGGTGGCCATGGCCATGCCCC 130 * * ** * ** * **** * * * * ** * * * * consensus_7559#0 AAAAGCAGAATTTCCAGTCGG--ATCAAGTTTTGTTACTCCTCGAAAGAACAAACTGGTG 775 consensus_7559#2 GAAAGCAGAATTTTCAGTTGG--ATCAAGTTTTGTTACTCCTCGAAAGAACAAAGTGGTG 188 consensus_7559#1 GGCGGCGCCGCCCAGGGCCGGGAACCAGGCCGTGTCGCTCCGCGAGGAGAGCTCCGGGAA 190 ** * ** * ** * *** **** *** * ** consensus_7559#0 GATGTGACGGACCATAAGGATTCTGCAGAACTGGTCAAGACAAGAAGCATT---CAGAAC 832 consensus_7559#2 GATGTGACGGACCATAAGGATTTTGCAGAACTGCTCAAGACAAGAAGCATT---CAGAAC 245 consensus_7559#1 GACGCGCGCCGACGCGGCCTCCCTGCTGAGG-GTCCAGCACCTGCAGCGGCTGGCGGCGT 249 ** * * * *** ** * ** ** * *** * * consensus_7559#0 AAGAAAGGGGAGATGCCAAGTTCAGTTACTGGCAAGGCCCCTACAATGCCTACCAAGTCA 892 consensus_7559#2 AAGAAAGCGGAGATGCCAAGTTCAGTTACTGGCAAGGCCCCTACAATGCCTACCAAGTCA 305 consensus_7559#1 GGGCGGGCGGGGAGGCCAGGGTGGGCCCCC--TCGGCGCCCTGCTGGGGCGAC--GCCTC 305 * * ** ** **** * * * * * **** * * * ** consensus_7559#0 GCTCCAAAGGACCGTGTGAAAAATAAATCTGTAGCAA--GTGGTTCTGCT----CAGATG 946 consensus_7559#2 GCTCCAAACGATAGTATGAAAAATAAACCTGTAGCAA--TTGGTTTTGCT----CAGATG 359 consensus_7559#1 GCCGCCAACGCCGAGGCGGCCGGGATACCTCTGGCCGCCTCCACCTTCCTATGCCAGAGG 365 ** * ** * * * * ** * ** * ** **** * consensus_7559#0 TCTGGTA-GTTCAAGGAAGCGGGCAAGAAAGGGGTGGACTACGCTGAAACAGATTGCTGA 1005 consensus_7559#2 TTTGGTA-GTTCAAGGAAGCGGGCAAGAAAGGGGTGGACTACGTTAAAACAGATTGCTGA 418 consensus_7559#1 TGTGAAACAGTCTTACAGCCAGGCTTCAACTGCACCATCCGCATAAAGAACAACAAAAGA 425 * ** * ** * * *** ** * * * * * * ** consensus_7559#0 AAAGGAAGAGCTTGAGAGAAAAGAGAAGATGGGTAACTTTGTAATACCAT---------T 1056 consensus_7559#2 AAAGGAAGAGCTTGAGAGAAAAGAGAAGATGGGTAACTTTGTAATTCCAT---------T 469 consensus_7559#1 AAAGCAAAGCGACGCAAGAAGTTAAACACTTGCCAGAACAGCATTTCCTACCTGTGCCAT 485 **** ** * **** * * * * * * * * ** * consensus_7559#0 CTTTATGCAATAAGAGATGTTACAACTCAC-GCTGATTGTAAGCTTTATTCTTGGTGTAT 1115 consensus_7559#2 TTTTATGCAATAAGAGATTTTACTACTCAC-GCCAAATGTAAAGTTTATAGTTGGTGTAT 528 consensus_7559#1 TTCTGTGGAGACCAAAACCTAATAAGGGGCAGCGGAAAGAATATTATGAAGGGCTTGTTA 545 * * ** * * * * * * * ** * * * * * *** consensus_7559#0 TTGTTGAGAATAGCA--TACAAAATTT-TGATCATATT---------------------- 1150 consensus_7559#2 TTGTTGAGAATTGCA--TACAAAAATTGTGATCATATTTTGAGTTGCTAAA--ATTTGAA 584 consensus_7559#1 TCATTAAGAAAGCCAGTTGGCATGGATGTTACCA-GCATTAAGTTGAAAGGGGACATAAA 604 * ** **** ** * * * * * ** consensus_7559#0 ------------------------------------------------------------ consensus_7559#2 CCATCACGCAGTGTAAACGAAACATGAACTGCCCAGAGGTTAAGTGGGGGAAAAATATCT 644 consensus_7559#1 TAACAAGAGATTAGTAACTATAAAAGAG--GGCTTGGAATATTCTCAAGGAGCAGTCTCA 662 consensus_7559#0 ------------------------------------------------------------ consensus_7559#2 TAACGAAAGG----GTTCGGGTATAAAAAAAAAAAA-----AAAAAAAAAAAATAAAAAG 695 consensus_7559#1 CAACTAGAGTCAACATCTGGGTTGAAACAACGAAATCTTGTAAAGAACGAGTATGAGGAG 722 consensus_7559#0 ------------- consensus_7559#2 G------------ 696 consensus_7559#1 AGCCCAGTACCCA 735 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||