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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 828 fasta sequence
[GCATTCATTTCGAGCATTGCAACAGAGAAGGCTGGGCAGGAAGGAGTCACAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTACAAGGCCCTCGACCGCTTCGACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGTCGGTAATCACTACCATTCGCACCAATCCTTAGCTACTTTAATTGGTCAATCCAAGAGCAAAGTTCTTGTTTTCAGTTTTCTGCATTCATCTGAAAAGACTGAAATCTGAGACCGTAGATCAATCAACCTGAATTTCACCCCTGGCAACACTTGGATTGAATGGCTTTGCTGCATATGCGCAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCGGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCTGAAAGCGACATCCACGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGAGGCGGCGTCGGCTGACACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTGGAAGTAGGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTGTGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTG]
[+] EMBL AK120226 [GCATTCATTTCGAGCATTGCAACAGAGAAGGCTGGGCAGGAAGGAGTCACAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTACAAGGCCCTCGACCGCTTCGACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGTCGGTAATCACTACCATTCGCACCAATCCTTAGCTACTTTAATTGGTCAATCCAAGAGCAAAGTTCTTGTTTTCAGTTTTCTGCATTCATCTGAAAAGACTGAAATCTGAGACCGTAGATCAATCAACCTGAATTTCACCCCTGGCAACACTTGGATTGAATGGCTTTGCTGCATATGCGCAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCGGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCTGAAAGCGACATCCACGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGAGGCGGCGTCGGCTGACACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTGGAAGTAGGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTGTGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTG]
[+] EMBL CB000598 [ CAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTACAAGGCCCTCGACCGCTTCGACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGTCGGTAATCACTACCATTCGCACCAATCCTTAGCTACTTTAATTGGTCAATCCAAGAGCAAAGTTCTTGTTTTCAGTTTTCTGCATTCATCTGAAAAGACTGAAATCTGAGACCGTAGATCAATCAACCTGAATTTCACCCCTGGCAACACTTGGATTGAATGGCTTTGCTGCATATGCGCAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCGGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTC ]
consensusID : consensus_7567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[CTGGCCTTGAAGGAGTCACAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTCAAGGCCCTCGACCGCTTCAACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCTGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTACCACATGAGCTGAAAGCGACATCCACGACTCCAGAAGCTAACATGCATCTGATTCCGAATAATCAATCAAAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGATGCGGCGTCCGCTGGCACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTGGAAGTACGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTGTGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTGGATCGAGAGCAACAGGGCTC]
[+] EMBL CB679144 [CTGGCCTTGAAGGAGTCACAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTCAAGGCCCTCGACCGCTTCAACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCTGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTACCACATGAGCTGAAAGCGACATCCACGACTCCAGAAGCTAACATGCATCTGATTCCGAATAATCAATCAAAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGATGCGGCGTCCGCTGGCACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTGGAAGTACGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTGTGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTGGATCGAGAGCAACAGGGCTC]
consensusID : consensus_7567#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence
[TCACATCAAGAAGGAGTTTGACATGATCCNCGGCCCGGAATGGCAGTGNGTGGTGGGCGCCAGCTTNGGTTGCTACTTCACGCACAGCAAGGGAAGNTTCATCTACTTCAAGCTGGGGGCGATCAGGTTNNTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCTGAAAGCGACATCCATGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACAAGACGGCGTCGGCTGGCACGATACATGGAGCGT]
[-] EMBL BF889456 [TCACATCAAGAAGGAGTTTGACATGATCCNCGGCCCGGAATGGCAGTGNGTGGTGGGCGCCAGCTTNGGTTGCTACTTCACGCACAGCAAGGGAAGNTTCATCTACTTCAAGCTGGGGGCGATCAGGTTNNTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCTGAAAGCGACATCCATGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACAAGACGGCGTCGGCTGGCACGATACATGGAGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7567#0 GCATTCATTTCGAGCATTGCAACAGAGAAGGCTGGGCAGGAAGGAGTCACAAGAGACGAC 60
consensus_7567#1 -------------------------------CTGGCCTTGAAGGAGTCACAAGAGACGAC 29
consensus_7567#2 ------------------------------------------------------------
consensus_7567#0 CACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCT 120
consensus_7567#1 CACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCT 89
consensus_7567#2 ------------------------------------------------------------
consensus_7567#0 GCAGGCGATGTCGGCGGCGTACAAGGCCCTCGACCGCTTCGACGTCCTCGACTGCCGGAG 180
consensus_7567#1 GCAGGCGATGTCGGCGGCGT-CAAGGCCCTCGACCGCTTCAACGTCCTCGACTGCCGGAG 148
consensus_7567#2 ------------------------------------------------------------
consensus_7567#0 CATCGCCGCTCACATCAAGAAGGTCGGTAATCACTACCATTCGCACCAATCCTTAGCTAC 240
consensus_7567#1 CATCGCCGCTCACATCAAGAAGG------------------------------------- 171
consensus_7567#2 ------------------------------------------------------------
consensus_7567#0 TTTAATTGGTCAATCCAAGAGCAAAGTTCTTGTTTTCAGTTTTCTGCATTCATCTGAAAA 300
consensus_7567#1 ------------------------------------------------------------
consensus_7567#2 ------------------------------------------------------------
consensus_7567#0 GACTGAAATCTGAGACCGTAGATCAATCAACCTGAATTTCACCCCTGGCAACACTTGGAT 360
consensus_7567#1 ------------------------------------------------------------
consensus_7567#2 ------------------------------------------------------------
consensus_7567#0 TGAATGGCTTTGCTGCATATGCGCAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGT 420
consensus_7567#1 ---------------------------AGTTTGACATGATCCACGGGCCGGGATGGCAGT 204
consensus_7567#2 -------------TCACATCAAGAAGGAGTTTGACATGATCCNCGGCCCGGAATGGCAGT 47
*************** *** **** ********
consensus_7567#0 GCGTGGTGGGCGCCAGCTTCGGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACT 480
consensus_7567#1 GCGTGGTGGGCGCCAGCTTCTGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACT 264
consensus_7567#2 GNGTGGTGGGCGCCAGCTTNGGTTGCTACTTCACGCACAGCAAGGGAAGNTTCATCTACT 107
* ***************** * ************************** **********
consensus_7567#0 TCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCT 540
consensus_7567#1 TCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTACCACATGAGCT 324
consensus_7567#2 TCAAGCTGGGGGCGATCAGGTTNNTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCT 167
************** ******* ************************* ** *******
consensus_7567#0 GAAAGCGACATCCACGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGA 600
consensus_7567#1 GAAAGCGACATCCACGACTCCAGAAGCTAACATGCATCTGATTCCGAATAATCAATCAAA 384
consensus_7567#2 GAAAGCGACATCCATGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGA 227
************** ** ** *********************** ************* *
consensus_7567#0 ATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGAGGCGGCG 660
consensus_7567#1 ATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGATGCGGCG 444
consensus_7567#2 ATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACAAGACGGCG 287
*************************************************** * *****
consensus_7567#0 TCGGCTGACACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTG 720
consensus_7567#1 TCCGCTGGCACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTG 504
consensus_7567#2 TCGGCTGGCACGATACATGGAGCGT----------------------------------- 312
** **** *****************
consensus_7567#0 GAAGTAGGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTG 780
consensus_7567#1 GAAGTACGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTG 564
consensus_7567#2 ------------------------------------------------------------
consensus_7567#0 TGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTG------------ 828
consensus_7567#1 TGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTGGATCGAGAGCAA 624
consensus_7567#2 ------------------------------------------------------------
consensus_7567#0 --------
consensus_7567#1 CAGGGCTC 632
consensus_7567#2 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||