These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 828 fasta sequence [GCATTCATTTCGAGCATTGCAACAGAGAAGGCTGGGCAGGAAGGAGTCACAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTACAAGGCCCTCGACCGCTTCGACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGTCGGTAATCACTACCATTCGCACCAATCCTTAGCTACTTTAATTGGTCAATCCAAGAGCAAAGTTCTTGTTTTCAGTTTTCTGCATTCATCTGAAAAGACTGAAATCTGAGACCGTAGATCAATCAACCTGAATTTCACCCCTGGCAACACTTGGATTGAATGGCTTTGCTGCATATGCGCAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCGGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCTGAAAGCGACATCCACGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGAGGCGGCGTCGGCTGACACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTGGAAGTAGGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTGTGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTG] [+] EMBL AK120226 [GCATTCATTTCGAGCATTGCAACAGAGAAGGCTGGGCAGGAAGGAGTCACAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTACAAGGCCCTCGACCGCTTCGACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGTCGGTAATCACTACCATTCGCACCAATCCTTAGCTACTTTAATTGGTCAATCCAAGAGCAAAGTTCTTGTTTTCAGTTTTCTGCATTCATCTGAAAAGACTGAAATCTGAGACCGTAGATCAATCAACCTGAATTTCACCCCTGGCAACACTTGGATTGAATGGCTTTGCTGCATATGCGCAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCGGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCTGAAAGCGACATCCACGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGAGGCGGCGTCGGCTGACACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTGGAAGTAGGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTGTGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTG] [+] EMBL CB000598 [ CAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTACAAGGCCCTCGACCGCTTCGACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGTCGGTAATCACTACCATTCGCACCAATCCTTAGCTACTTTAATTGGTCAATCCAAGAGCAAAGTTCTTGTTTTCAGTTTTCTGCATTCATCTGAAAAGACTGAAATCTGAGACCGTAGATCAATCAACCTGAATTTCACCCCTGGCAACACTTGGATTGAATGGCTTTGCTGCATATGCGCAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCGGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTC ] consensusID : consensus_7567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CTGGCCTTGAAGGAGTCACAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTCAAGGCCCTCGACCGCTTCAACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCTGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTACCACATGAGCTGAAAGCGACATCCACGACTCCAGAAGCTAACATGCATCTGATTCCGAATAATCAATCAAAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGATGCGGCGTCCGCTGGCACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTGGAAGTACGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTGTGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTGGATCGAGAGCAACAGGGCTC] [+] EMBL CB679144 [CTGGCCTTGAAGGAGTCACAAGAGACGACCACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCTGCAGGCGATGTCGGCGGCGTCAAGGCCCTCGACCGCTTCAACGTCCTCGACTGCCGGAGCATCGCCGCTCACATCAAGAAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCTGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTACCACATGAGCTGAAAGCGACATCCACGACTCCAGAAGCTAACATGCATCTGATTCCGAATAATCAATCAAAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGATGCGGCGTCCGCTGGCACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTGGAAGTACGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTGTGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTGGATCGAGAGCAACAGGGCTC] consensusID : consensus_7567#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [TCACATCAAGAAGGAGTTTGACATGATCCNCGGCCCGGAATGGCAGTGNGTGGTGGGCGCCAGCTTNGGTTGCTACTTCACGCACAGCAAGGGAAGNTTCATCTACTTCAAGCTGGGGGCGATCAGGTTNNTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCTGAAAGCGACATCCATGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACAAGACGGCGTCGGCTGGCACGATACATGGAGCGT] [-] EMBL BF889456 [TCACATCAAGAAGGAGTTTGACATGATCCNCGGCCCGGAATGGCAGTGNGTGGTGGGCGCCAGCTTNGGTTGCTACTTCACGCACAGCAAGGGAAGNTTCATCTACTTCAAGCTGGGGGCGATCAGGTTNNTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCTGAAAGCGACATCCATGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGAATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACAAGACGGCGTCGGCTGGCACGATACATGGAGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7567#0 GCATTCATTTCGAGCATTGCAACAGAGAAGGCTGGGCAGGAAGGAGTCACAAGAGACGAC 60 consensus_7567#1 -------------------------------CTGGCCTTGAAGGAGTCACAAGAGACGAC 29 consensus_7567#2 ------------------------------------------------------------ consensus_7567#0 CACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCT 120 consensus_7567#1 CACCATGTTGGAAGGGAAGGCGATGGTGGAGGACACCGACATGCCGGTGAAGATGCAGCT 89 consensus_7567#2 ------------------------------------------------------------ consensus_7567#0 GCAGGCGATGTCGGCGGCGTACAAGGCCCTCGACCGCTTCGACGTCCTCGACTGCCGGAG 180 consensus_7567#1 GCAGGCGATGTCGGCGGCGT-CAAGGCCCTCGACCGCTTCAACGTCCTCGACTGCCGGAG 148 consensus_7567#2 ------------------------------------------------------------ consensus_7567#0 CATCGCCGCTCACATCAAGAAGGTCGGTAATCACTACCATTCGCACCAATCCTTAGCTAC 240 consensus_7567#1 CATCGCCGCTCACATCAAGAAGG------------------------------------- 171 consensus_7567#2 ------------------------------------------------------------ consensus_7567#0 TTTAATTGGTCAATCCAAGAGCAAAGTTCTTGTTTTCAGTTTTCTGCATTCATCTGAAAA 300 consensus_7567#1 ------------------------------------------------------------ consensus_7567#2 ------------------------------------------------------------ consensus_7567#0 GACTGAAATCTGAGACCGTAGATCAATCAACCTGAATTTCACCCCTGGCAACACTTGGAT 360 consensus_7567#1 ------------------------------------------------------------ consensus_7567#2 ------------------------------------------------------------ consensus_7567#0 TGAATGGCTTTGCTGCATATGCGCAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGT 420 consensus_7567#1 ---------------------------AGTTTGACATGATCCACGGGCCGGGATGGCAGT 204 consensus_7567#2 -------------TCACATCAAGAAGGAGTTTGACATGATCCNCGGCCCGGAATGGCAGT 47 *************** *** **** ******** consensus_7567#0 GCGTGGTGGGCGCCAGCTTCGGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACT 480 consensus_7567#1 GCGTGGTGGGCGCCAGCTTCTGCTGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACT 264 consensus_7567#2 GNGTGGTGGGCGCCAGCTTNGGTTGCTACTTCACGCACAGCAAGGGAAGNTTCATCTACT 107 * ***************** * ************************** ********** consensus_7567#0 TCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCT 540 consensus_7567#1 TCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGCATCGTACCACATGAGCT 324 consensus_7567#2 TCAAGCTGGGGGCGATCAGGTTNNTCGTCTTCAAAGGCGCAGCATCGTAGCAGATGAGCT 167 ************** ******* ************************* ** ******* consensus_7567#0 GAAAGCGACATCCACGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGA 600 consensus_7567#1 GAAAGCGACATCCACGACTCCAGAAGCTAACATGCATCTGATTCCGAATAATCAATCAAA 384 consensus_7567#2 GAAAGCGACATCCATGAGTCGAGAAGCTAACATGCATCTGATTCGGAATAATCAATCAGA 227 ************** ** ** *********************** ************* * consensus_7567#0 ATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGAGGCGGCG 660 consensus_7567#1 ATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGATGCGGCG 444 consensus_7567#2 ATAACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACAAGACGGCG 287 *************************************************** * ***** consensus_7567#0 TCGGCTGACACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTG 720 consensus_7567#1 TCCGCTGGCACGATACATGGAGCGTGAATTGTACTCGCACGATAGCACAGTAGAAAATTG 504 consensus_7567#2 TCGGCTGGCACGATACATGGAGCGT----------------------------------- 312 ** **** ***************** consensus_7567#0 GAAGTAGGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTG 780 consensus_7567#1 GAAGTACGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGCGATTCCACTTGGTGTTG 564 consensus_7567#2 ------------------------------------------------------------ consensus_7567#0 TGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTG------------ 828 consensus_7567#1 TGTAATGTTTTTCTAGAATGACTTGGTTTCCCTTGTAGTACATAATTGGATCGAGAGCAA 624 consensus_7567#2 ------------------------------------------------------------ consensus_7567#0 -------- consensus_7567#1 CAGGGCTC 632 consensus_7567#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||