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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1490 fasta sequence
[TCGGCGAGGACCACAAGGACCTCCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGCTCTCCACCTACGCCGCCATCCAGCAGCGCGTCATCCTCTCCCACCTCCGGCGGTGGCTCGACCGGAGCGCCGCCAACGGCGGCAAGGCCGAGCCGATTCGGGTGCCCTGCCGCGACATGAATCTCGAGACCTCGCAGACGGTGTTCGCGGGGCCGTACCTCACCAAGGAGGCGAGGGAGAAGTTCGAGAGGGACTACAATTTCTTCAATGTCGGCCTCATGGCCCTCCCCGTTGACCTGCCGGGGTTCGCATTCCGGAGCGCGAGGCTGGGCGTGGCGCGGCTGGTGCGCACGCTCGGCGAGTGCGCGCGGGCGAGCAAGGCGCGGATGCGCGCCGGCGGCGAACCAGAGTGCCTCGTCGACTTCTGGATGCAGGAGACGGTGCGGGAGATCGACGAGGCCAAGGCAGCGGGGAAGCCGCCTCCGGCGCACACCGACGACGAGGAGCTCGGGGGCTTCCTGTTCGACTTCCTCTTCGCGGCGCAGGACGCGTCCACCTCCTCCCTCTGCTGGGCCGTGTCCGCGCTGGACTCCCACCCGGACGTGCTCGCAGGCGTGCGCGCCGAGGTGGCCTCCCTCTGGTCCCCGGAGTCCGGCGAGCCCATCACCGCCGAGAAGATCGCGGAGATGAAGTACACTCAGGCCGTAGCTCGCGAGGTGGTCCGGCACCGGCCACCGGCGACGCTGGTGCCGCACATCGCCGGCGAGGAGTTCCAGCTGACGGAGTGGTACACGATCCCCAAGGGCACCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCCCCGAGCCGGACACGTTCGACCCGGAGCGCTTCTTCTCGGAGGCACGGAGGGAGGACGTGGTGTACAAGCGCAACTTCCTCGCGTTCGGCGCCGGGCCGCACCAGTGCGTCGGGCAGCGGTACGCGCTCAACCACCTCGTCCTATTCATGGCGCTCTTCGTCTCCGTCGTGGACTTCCGGCGAGACCGGACGGAGGGCTGCGACGAGCCGGTGTACATGCCGACCATCGTGCCGAGGGACAGCTGCACCGTGTACCTCAAGCAGCGATGCGCCAAGTTCCCATCTTTCTGAGCTGGTTTCCCTTGTCCTCTTGCTCTGCTCCTCTTCCCGTGCATCGCATAATTTTTCTTCTTCTCCATTTTTCTTTTCAATCTGGTGGATCGTGTCGCAGCTGTGATGCATTGTTGATTTGTAGGTTTTGATGTTTGGTCCATTCAATTATTTTTGTTGGTAATTGGGTTCAGTTGGGGTTTGGACTCAGCTTTGGGTCCCAGCCGGCTAGGGGATGATACGAACACTACATCTGGGGTTGTTGGCCACATGTGTGGGTCTTCTGGTTTGGTTGGTTGGCATGTCTCAGGAAATTGGTGGTATTTGGAATGGATTTGCTCGATTGTTTTGGCAACTAAAATGTGAGCA]
[+] EMBL AK060710 [TCGGCGAGGACCACAAGGACCTCCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGCTCTCCACCTACGCCGCCATCCAGCAGCGCGTCATCCTCTCCCACCTCCGGCGGTGGCTCGACCGGAGCGCCGCCAACGGCGGCAAGGCCGAGCCGATTCGGGTGCCCTGCCGCGACATGAATCTCGAGACCTCGCAGACGGTGTTCGCGGGGCCGTACCTCACCAAGGAGGCGAGGGAGAAGTTCGAGAGGGACTACAATTTCTTCAATGTCGGCCTCATGGCCCTCCCCGTTGACCTGCCGGGGTTCGCATTCCGGAGCGCGAGGCTGGGCGTGGCGCGGCTGGTGCGCACGCTCGGCGAGTGCGCGCGGGCGAGCAAGGCGCGGATGCGCGCCGGCGGCGAACCAGAGTGCCTCGTCGACTTCTGGATGCAGGAGACGGTGCGGGAGATCGACGAGGCCAAGGCAGCGGGGAAGCCGCCTCCGGCGCACACCGACGACGAGGAGCTCGGGGGCTTCCTGTTCGACTTCCTCTTCGCGGCGCAGGACGCGTCCACCTCCTCCCTCTGCTGGGCCGTGTCCGCGCTGGACTCCCACCCGGACGTGCTCGCAGGCGTGCGCGCCGAGGTGGCCTCCCTCTGGTCCCCGGAGTCCGGCGAGCCCATCACCGCCGAGAAGATCGCGGAGATGAAGTACACTCAGGCCGTAGCTCGCGAGGTGGTCCGGCACCGGCCACCGGCGACGCTGGTGCCGCACATCGCCGGCGAGGAGTTCCAGCTGACGGAGTGGTACACGATCCCCAAGGGCACCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCCCCGAGCCGGACACGTTCGACCCGGAGCGCTTCTTCTCGGAGGCACGGAGGGAGGACGTGGTGTACAAGCGCAACTTCCTCGCGTTCGGCGCCGGGCCGCACCAGTGCGTCGGGCAGCGGTACGCGCTCAACCACCTCGTCCTATTCATGGCGCTCTTCGTCTCCGTCGTGGACTTCCGGCGAGACCGGACGGAGGGCTGCGACGAGCCGGTGTACATGCCGACCATCGTGCCGAGGGACAGCTGCACCGTGTACCTCAAGCAGCGATGCGCCAAGTTCCCATCTTTCTGAGCTGGTTTCCCTTGTCCTCTTGCTCTGCTCCTCTTCCCGTGCATCGCATAATTTTTCTTCTTCTCCATTTTTCTTTTCAATCTGGTGGATCGTGTCGCAGCTGTGATGCATTGTTGATTTGTAGGTTTTGATGTTTGGTCCATTCAATTATTTTTGTTGGTAATTGGGTTCAGTTGGGGTTTGGACTCAGCTTTGGGTCCCAGCCGGCTAGGGGATGATACGAACACTACATCTGGGGTTGTTGGCCACATGTGTGGGTCTTCTGGTTTGGTTGGTTGGCATGTCTCAGGAAATTGGTGGTATTTGGAATGGATTTGCTCGATTGTTTTGGCAACTAAAATGTGAGCA]
consensusID : consensus_757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1016 fasta sequence
[AACTGTCTGAGCAGGAGCTCGAGAGCCTTCAGCACCCCACGCACTATGAGAACCAGCACTGACCCGTCCGGCTCAATCGAGTCGTTTCACGGCCTCGTACACCTCCGCACGGCGGCGCCATTGCTGGCTGCAGCTGTGGCGTTATACATGCTCATAGAGCAGCTGTCATACCACCGCAAGAAGGGGTCCATGCCAGGGGCGCCGCTCGTCGTGCCGTTCCTCGGTAGCGCCGCGCATTTGATCCGCGACCCGGTCGGATTCTGGGACGTGCAAGCGGCGCTCGCTCGCAAGTCCGGCGCTGGGCTCGCCGCGGACTTTCTCTTCGGCCGGTTCACGGTCTTCATCCGTGACTCGGAGCTGTCCCACCGCGTGTTCGCCAACGTCCGCGCCGACGCCTTCCACGTCGTCAGCCACCCGTTCGGCAAGAAGCTCTTCGGCGAACACAACCTCGTCTACCTGGTCGGCGAGGAGCACAAGGACCTGCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGCTCTCCACTTATGCCGTCATCCAGCAGCGTGTCATCATCTCCCACCTCCGGCGGTGGCTCGACCGGAGTGCTTCCAACGGCGGCAAGGCCGAGCCGATACGGGTGCCCTGCCGCGACATGAACCTGGAGACCTCGCAGACGGTGTTCGTGGGGCCGTACCTCACCGAGAAGGCGAGGGAGAGGTTCGACAGGGATTACAACCTCTTCAACGTCGGTTTCATAACCTTGCCCGTGGACCTTCCGGGGTTCGCGTTCCGCCGGGCGAGGCTAGCCGGGGCACGGCTGATGCACACTCTCGGGGACTGCGCACGTCAGAGCAGGCAACGCATGCTTGGCGGCGGCGAGCCAGAGTGCCTCCTGGACTACTTGATGCAGGAAACGGTGCGTGAGATCGACGAGGCCACGGCAGCGGGGCTGCCGCCACCACCGCACACCAGCGACGTGGAGGTCGGCGCCCTCCTGTTCGGCTTCCTCTTCGCGGCGCAGGACGCGTCCAC]
[+] EMBL AK071150 [AACTGTCTGAGCAGGAGCTCGAGAGCCTTCAGCACCCCACGCACTATGAGAACCAGCACTGACCCGTCCGGCTCAATCGAGTCGTTTCACGGCCTCGTACACCTCCGCACGGCGGCGCCATTGCTGGCTGCAGCTGTGGCGTTATACATGCTCATAGAGCAGCTGTCATACCACCGCAAGAAGGGGTCCATGCCAGGGGCGCCGCTCGTCGTGCCGTTCCTCGGTAGCGCCGCGCATTTGATCCGCGACCCGGTCGGATTCTGGGACGTGCAAGCGGCGCTCGCTCGCAAGTCCGGCGCTGGGCTCGCCGCGGACTTTCTCTTCGGCCGGTTCACGGTCTTCATCCGTGACTCGGAGCTGTCCCACCGCGTGTTCGCCAACGTCCGCGCCGACGCCTTCCACGTCGTCAGCCACCCGTTCGGCAAGAAGCTCTTCGGCGAACACAACCTCGTCTACCTGGTCGGCGAGGAGCACAAGGACCTGCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGCTCTCCACTTATGCCGTCATCCAGCAGCGTGTCATCATCTCCCACCTCCGGCGGTGGCTCGACCGGAGTGCTTCCAACGGCGGCAAGGCCGAGCCGATACGGGTGCCCTGCCGCGACATGAACCTGGAGACCTCGCAGACGGTGTTCGTGGGGCCGTACCTCACCGAGAAGGCGAGGGAGAGGTTCGACAGGGATTACAACCTCTTCAACGTCGGTTTCATAACCTTGCCCGTGGACCTTCCGGGGTTCGCGTTCCGCCGGGCGAGGCTAGCCGGGGCACGGCTGATGCACACTCTCGGGGACTGCGCACGTCAGAGCAGGCAACGCATGCTTGGCGGCGGCGAGCCAGAGTGCCTCCTGGACTACTTGATGCAGGAAACGGTGCGTGAGATCGACGAGGCCACGGCAGCGGGGCTGCCGCCACCACCGCACACCAGCGACGTGGAGGTCGGCGCCCTCCTGTTCGGCTTCCTCTTCGCGGCGCAGGACGCGTCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_757#0 TCGGCGAGGACCACAAGGACCTCCGCCGCCGGATCGCGCCCAACTTCACGCCGCGCGCGC 60
consensus_757#1 ------------------------------------------------------------
consensus_757#0 TCTCCACCTACGCCGCCATCCAGCAGCGCGTCATCCTCTCCCACCTCCGGCGGTGGCTCG 120
consensus_757#1 ---------AACTGTCTGAGCAGGAGCTCGAGAGCCTTCAGCACCCCACGCACTATGAGA 51
* * *** *** ** * *** **** * ** *
consensus_757#0 ACCGGAGCGCCGCCAACGGCGGCAAGGCCGAGCCGATTCGGGTGCCCTGCCGCGACATGA 180
consensus_757#1 ACC--AGCACTGACCCGTCCGGCTCAATCGAGTCGTTTCACGGCCTCGTACACCTCCGCA 109
*** *** * * * **** **** ** *** * * * * * * *
consensus_757#0 ATCTCGAGACCTCGCAGACGGTGTTCGCGGGGCCGTAC---CTCACCAAGGAGGCGAGGG 237
consensus_757#1 CGGCGGCGCCATTGCTGGCTGCAGCTGTGGCGTTATACATGCTCATAGAGCAGCTGTCAT 169
* * * * ** * * * * ** * *** **** ** ** *
consensus_757#0 AGAAGTTCGAGAGGGACTACAATTTCTTCAATGTCGGCC-TCATGGCCCTCCCCGTTGAC 296
consensus_757#1 ACCACCGCAAGAAGGGGTCCA-TGCCAGGGGCGCCGCTCGTCGTGCCGTTCCTCGGTAGC 228
* * * *** ** * ** * * * ** * ** ** * *** ** * *
consensus_757#0 CTGCCGGGGTTCGCATTCCGGAGCGCGAGGCTGGGCGTGGCGCGGCTGGTGCGCACGCTC 356
consensus_757#1 --GCCGCGCATTTGATCCGCGACCCGGTCGGATTCTGGGACGTGCAAGCGGCGCTCGCTC 286
**** * * ** * ** * * * * * ** * * **** *****
consensus_757#0 GGCGAGTGCGCGCGGGCGAGCAAGGCGCGGATGCGCGCCGGCGGCGAACCAGAGTGCCTC 416
consensus_757#1 G-CAAGTCCG-GCGC-TGGGCTCGCCGCGGACTTTCTCTTCGGCCGGTTCACGGT-CTTC 342
* * *** ** *** * ** * ****** * * * ** ** ** * **
consensus_757#0 GTCGACTTCTGGATGCAGGAGACGGTGCGGGAGATCGACGAGG-CCAAGGCAGCGGGGAA 475
consensus_757#1 ATCCGTGACTCGGAGCTGT---CCCACCGCGTGTTCGCCAACGTCCGCGCCGACGCCTTC 399
** ** * ** * * ** * * *** * * * ** * * **
consensus_757#0 GCCGCCTCCGGCGCACACCGACGACGAGGAGCTCGGGGGCTTCCTGTTCGACTTCCTCTT 535
consensus_757#1 CACGTCGTCAGC-CACCCGTTCGGCAAGAAGCTCTTCGGCGAAC---ACAACCTCGTCTA 455
** * * ** *** * ** * ** ***** *** * * ** ** ***
consensus_757#0 CGCGGCGCAGGACGCGTCCACCTCCTCCCTCTGCTGGGCCGTGTCCGCGCTGGACTCCCA 595
consensus_757#1 CCTGGTCGGCGAGGAGCACAAGGACCTGCGCCGCCGGATCGCGCCCAACTTCACGCCGCG 515
* ** ** * * ** * * * ** ** ** * ** * * *
consensus_757#0 CCCGGACGTGCTCGCAGGCGT-GCGCGCCGAGGTGGCCTC-CCTCTGGTCCCCGGAGTCC 653
consensus_757#1 CGCGCTCTCCACTTATGCCGTCATCCAGCAGCGTGTCATCATCTCCCACCTCCGGCGGTG 575
* ** * * *** * * *** * ** *** * **** *
consensus_757#0 GGCGAGCCCATCACCGCCGAGAAGATCGCGGAGATGAAGTACACTCAGGCCGTAGCTCGC 713
consensus_757#1 GCTCGACCGG--AGTGCTTCCAACGGCGGCAAGGCCGAGCCGATACGGGTGCCCTGCCGC 633
* ** * ** ** ** ** ** * * ** ***
consensus_757#0 GAGGTGGTCCGGCACCGGCCACCGGCGACGCTGGTG---CCGCACATCGCCGGCGAGGAG 770
consensus_757#1 GACATGAACCTGGAGACCTCGCAGACGGTGTTCGTGGGGCCGTACCTCACCGAGAAGGCG 693
** ** ** * * * * * ** * * *** *** ** ** *** *** *
consensus_757#0 TTCCAGCTGACGGAGTGG---TACACGATCCCCAAGGGCACCATCGTGTTCCCGTCGGTG 827
consensus_757#1 AGGGAGAGGTTCGACAGGGATTACAACCTCTTCAACGTCGGTTTCATAACCTTGCCCGTG 753
** * ** ** **** ** *** * * ** * * * * ***
consensus_757#0 TACGAGTCGTCGTTCCAGGGGTTCCCCGAGCCGGACACGTTCGACC-CGG--AGCGCTTC 884
consensus_757#1 GACCTTCCGGGGTTC--GCGTTCCGCCGGGCGAGGCTAGCCGGGGCACGGCTGATGCACA 811
** ** **** * * * * *** ** * * * * * *** **
consensus_757#0 TTCTCGGAGGC-ACGGAGGG-AGGACGTGGTGTACAAGCGCAACTTCCTCGCGTTCGGCG 942
consensus_757#1 CTCTCGGGGACTGCGCACGTCAGAGCAGGCAACGCATGCTTGGCGGCGGCGAGCCAGAGT 871
****** * * ** * * ** * * ** ** * * ** * *
consensus_757#0 CCGGGCCGCACCAGTGCGT-CGGGCAGCGGTACGCGCTCAACCACCTCGTCCTATTCATG 1001
consensus_757#1 GCCTCCTGGACTACTTGATGCAGGAAACGGTGCGTG--AGATCGACGAGGCCACGGCAGC 929
* * * ** * * * * ** * **** ** * * * * * ** **
consensus_757#0 GCGCTCTTCGTCTCCGTCGTGGACTTCCGGCGAGACCGGACGGAGGGCTGCGACGAGCCG 1061
consensus_757#1 GGGGCTGCCGCCACCACCGCACACCAGCGACG--------TGGAGGTCGGCGCC---CTC 978
* * ** * ** ** ** ** ** ***** * *** * *
consensus_757#0 GTGTACATGCCGACCATCGTGCCGAGGGACAGCTGCACCGTGTACCTCAAGCAGCGATGC 1121
consensus_757#1 CTGTTCGGCTTCCTCTTCGCGGCGCAGGACGCGTCCAC---------------------- 1016
*** * * *** * ** **** * ***
consensus_757#0 GCCAAGTTCCCATCTTTCTGAGCTGGTTTCCCTTGTCCTCTTGCTCTGCTCCTCTTCCCG 1181
consensus_757#1 ------------------------------------------------------------
consensus_757#0 TGCATCGCATAATTTTTCTTCTTCTCCATTTTTCTTTTCAATCTGGTGGATCGTGTCGCA 1241
consensus_757#1 ------------------------------------------------------------
consensus_757#0 GCTGTGATGCATTGTTGATTTGTAGGTTTTGATGTTTGGTCCATTCAATTATTTTTGTTG 1301
consensus_757#1 ------------------------------------------------------------
consensus_757#0 GTAATTGGGTTCAGTTGGGGTTTGGACTCAGCTTTGGGTCCCAGCCGGCTAGGGGATGAT 1361
consensus_757#1 ------------------------------------------------------------
consensus_757#0 ACGAACACTACATCTGGGGTTGTTGGCCACATGTGTGGGTCTTCTGGTTTGGTTGGTTGG 1421
consensus_757#1 ------------------------------------------------------------
consensus_757#0 CATGTCTCAGGAAATTGGTGGTATTTGGAATGGATTTGCTCGATTGTTTTGGCAACTAAA 1481
consensus_757#1 ------------------------------------------------------------
consensus_757#0 ATGTGAGCA 1490
consensus_757#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||