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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2920 fasta sequence
[TTCATTTCTACACGCACCAAACGCCCCCAAAACCACCAGAAACACACGCGCAGACGCTGCCCCGGCCCCGGCCCCGCCCCCGCCCCCAACACTCTCTCTCGGATCCCCTTTCCTCTCTTCCTTCGCCGCGGGCGCGCCACGGCGGCGACGGGTCGGGTCTCGCTGTCGCCGCCGCTGCTGCCGAAATGGGGTACCTCTCCTGCCGCGCGGACTCGTCGGTGGCGACGTGCCGGTCCATCACCGCCATATCGCCGCTGCCGCTGTCGCGGCGGTCGGGGGTCGGCGGCAGGCGGCGCGCGCTGCCGGCGGCGGCGAGGGAGGGGGATGGTGGGGAGGCGTCGTCCGCCGCCGCCACCATCGAGCGGTTCGCGTACCACGAACTGGAGGCGGCGACCTCCCACTTCGCGGACGCGGCGCTGCTCGGGAGGGGCTAGCCACGGGGCTGGTGTACAAGGCGGTGCTCGCCTCCGGCCGCGCCGTCGCCGTCAAGCGCCCCTCCCCGCGCCGCCCCGAGGTGGACAACGAGATCCGCATCCTCTCCTCCGTCCGCGGCCCGCGCCTCGTCAACCTCCTCGGCTTCTCCGACTCCGGCGCCGGCGCCGGCGCCGACCAGCAGCAGCAGCAGCACCGCCCGCGCCTGCTCGTCGTCGAGTACATGCCCAACGGCACGCTCTATGAGCTGCTCCATTCCAACCCGCGCCCGCCCGGGTGGCCGCGCCGCGTCCGCCTCGCGCTCCAGACGGCGCGCGCGCTCCGCGCGCTCCACGACGCCGATCCCCCCGTCATCCATCGCGACGTCAAGTCCGCCAACGTCCTGCTCGACGCCAACCTCGACGCGCGCCTCGGCGACTTCGGCCTAGCCCTCCGCGTGCCCAAGCGGCTACCCGGCGACGCCGCCGCCAATGCCGCCGCCACGCCGGCGCCGGCGGGCACGCTCGGGTACCTCGACCCGGCCTACGTCACGCCGGAGAGCCTCAGCACCAAGACCGACGTCTTCAGCTTCGGGATCCTGCTGCTCGAGATCATGAGCGGCCGCAAGGCCATCGACGTCCAGCACTCGCCGCCGTCGGTGGTGGAGTGGGCGGTGCCCCTGCTGCGGAAGGGGAAGGTGGCCTCGCTGTTCGACCCACGGGTGGCGCCGCCGCGTGACCCGGTCACCCGGAGAGACCTAGCCGCTCTGGCGGCGAGCTGCGTGCGGTCGTGCAGGGAGCGGCGGCCGTCGATGGCCGACATAGTTGATCGGCTTGTGGTTCTCAGCAAGGCCGTGTCGGGCAAAATGTGGAACGGACTCGCCGTGGTTGGGAACCCCTGCGCTGTCGTGGATGTCCAGAAGACCATCGCGAAGCGAGCTGCTGCTGCTGCTGCAGGCGATAGAGCCGCGTCGCAGCGGGAGCTGACTTCGGCATTGGCATTTGATGATGATGAGAAGAAAGAGGAGGAGGATGCGCCGAATGCAGGTGCGTTAGAGGAGGATGAGGTGCCATTGGTGGGTGCGAAGAAAGCACCCCGGCCATTGAAGAATGGGAAGATGTTCTCTGAGCCAGGGGCAAGGGAGAGGAGAAATCTCTTGGAGCTCATGGCTCGGATTGATGGTGTCGCCGGCCAAAGATTTGGCATAACTCGGGCAAGAACAGTGCGTGCCGCTAGTGAATCTATCGAAAAAGATGCGGCGGTGTTGCTCCTGAGGAGAAATCAAACTGTGAAAGTACTTGGATCGGAGGCCCTTTCTAAAGCTGATATCTTTTCAAGTTTGGATGCAAAAATCAAGCATGAATTGGGGAAAGAGCAGCAAGAGGAGGCAGGAAAAATCAAGCATGAATTGGTGAAAGAGCAGCAAGAGAAGGCAGGAAATATCAAGCAGGAATTGGTGAAAGAGCAGCAAGAGAAGGCAGGAAATATCAAGCAGGAATCAGGGGAAGAGCAAGAGAAGGCAGGGAAAACCAAGCATGATGCAGGGAAAGGGCATGTTGAGAAGGCAGTGGGAATCAATCTTGAAGCAGGGAAGGAGCAGGAGAAAGTAGAGAAAAACCAAGAGAAAGAAATGAAAATCCAAGAAAAACTTGGGGAAATCTTTGATAAAGCAATGAAATCTGAAGAAAAGACAGGGCAAAATCCTGGCATAGAAAAGAAAATCCAAGACACGGCAGAGAAGAAACAAGAGCATGATGCTAGGGTAGTCCAAGACAAAGTGGAGAAGATCCAAGACGAAGCCAAGAAAATCCAATGAGTGTAAAGAGTTAAAATAATGCAACTGTTCTTAATCAATTATTGCT-TGGCAGTTGATCTGAGGACAAGGCCCATCATCTATGGATCTCATTGCTTCGATGTCATGATGAGATTTCTAGTTCTAGAGATAAGATCCTGGAAATCACTTACCAGCAACCTGGCCATCCATTTCGGAAATCGGTACTGTGCTGGTAATGTCATCAAGGCTTAAGTCCTAAGGTCTCCGGTGATAACCAATGCAACACAAACTGTGGTTAATCCTCTGTAAGATTGACTGGATCAGGAAGGCTGGAAGGCTGGAAGTCTGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAATGAAATTCATTCTCCATGTAAGCAACCGGTAATCGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAATGAAATTCATTCTCCATGTAAGCAACCGGTAATCATTTTGCTGCTTCAGTTCAAGTTTGGAGCTTTAAAATGATCCCTAGTTGGAAGTAGATTGTTGTAGCTTTTGCCCAACTTCTTTGATTCA-TTTTTTTCCCTATCTGCATAGAAGAATCACCAACTGTTCTGTTGATTGTATGTAGATAGGAAGCAGAAGTGCAATGTTAAGGAAAAAAAAGTATTTTA------TCAAAAAAAAAAAAAA]
[+] EMBL AK120230 [TTCATTTCTACACGCACCAAACGCCCCCAAAACCACCAGAAACACACGCGCAGACGCTGCCCCGGCCCCGGCCCCGCCCCCGCCCCCAACACTCTCTCTCGGATCCCCTTTCCTCTCTTCCTTCGCCGCGGGCGCGCCACGGCGGCGACGGGTCGGGTCTCGCTGTCGCCGCCGCTGCTGCCGAAATGGGGTACCTCTCCTGCCGCGCGGACTCGTCGGTGGCGACGTGCCGGTCCATCACCGCCATATCGCCGCTGCCGCTGTCGCGGCGGTCGGGGGTCGGCGGCAGGCGGCGCGCGCTGCCGGCGGCGGCGAGGGAGGGGGATGGTGGGGAGGCGTCGTCCGCCGCCGCCACCATCGAGCGGTTCGCGTACCACGAACTGGAGGCGGCGACCTCCCACTTCGCGGACGCGGCGCTGCTCGGGAGGGGCTAGCCACGGGGCTGGTGTACAAGGCGGTGCTCGCCTCCGGCCGCGCCGTCGCCGTCAAGCGCCCCTCCCCGCGCCGCCCCGAGGTGGACAACGAGATCCGCATCCTCTCCTCCGTCCGCGGCCCGCGCCTCGTCAACCTCCTCGGCTTCTCCGACTCCGGCGCCGGCGCCGGCGCCGACCAGCAGCAGCAGCAGCACCGCCCGCGCCTGCTCGTCGTCGAGTACATGCCCAACGGCACGCTCTATGAGCTGCTCCATTCCAACCCGCGCCCGCCCGGGTGGCCGCGCCGCGTCCGCCTCGCGCTCCAGACGGCGCGCGCGCTCCGCGCGCTCCACGACGCCGATCCCCCCGTCATCCATCGCGACGTCAAGTCCGCCAACGTCCTGCTCGACGCCAACCTCGACGCGCGCCTCGGCGACTTCGGCCTAGCCCTCCGCGTGCCCAAGCGGCTACCCGGCGACGCCGCCGCCAATGCCGCCGCCACGCCGGCGCCGGCGGGCACGCTCGGGTACCTCGACCCGGCCTACGTCACGCCGGAGAGCCTCAGCACCAAGACCGACGTCTTCAGCTTCGGGATCCTGCTGCTCGAGATCATGAGCGGCCGCAAGGCCATCGACGTCCAGCACTCGCCGCCGTCGGTGGTGGAGTGGGCGGTGCCCCTGCTGCGGAAGGGGAAGGTGGCCTCGCTGTTCGACCCACGGGTGGCGCCGCCGCGTGACCCGGTCACCCGGAGAGACCTAGCCGCTCTGGCGGCGAGCTGCGTGCGGTCGTGCAGGGAGCGGCGGCCGTCGATGGCCGACATAGTTGATCGGCTTGTGGTTCTCAGCAAGGCCGTGTCGGGCAAAATGTGGAACGGACTCGCCGTGGTTGGGAACCCCTGCGCTGTCGTGGATGTCCAGAAGACCATCGCGAAGCGAGCTGCTGCTGCTGCTGCAGGCGATAGAGCCGCGTCGCAGCGGGAGCTGACTTCGGCATTGGCATTTGATGATGATGAGAAGAAAGAGGAGGAGGATGCGCCGAATGCAGGTGCGTTAGAGGAGGATGAGGTGCCATTGGTGGGTGCGAAGAAAGCACCCCGGCCATTGAAGAATGGGAAGATGTTCTCTGAGCCAGGGGCAAGGGAGAGGAGAAATCTCTTGGAGCTCATGGCTCGGATTGATGGTGTCGCCGGCCAAAGATTTGGCATAACTCGGGCAAGAACAGTGCGTGCCGCTAGTGAATCTATCGAAAAAGATGCGGCGGTGTTGCTCCTGAGGAGAAATCAAACTGTGAAAGTACTTGGATCGGAGGCCCTTTCTAAAGCTGATATCTTTTCAAGTTTGGATGCAAAAATCAAGCATGAATTGGGGAAAGAGCAGCAAGAGGAGGCAGGAAAAATCAAGCATGAATTGGTGAAAGAGCAGCAAGAGAAGGCAGGAAATATCAAGCAGGAATTGGTGAAAGAGCAGCAAGAGAAGGCAGGAAATATCAAGCAGGAATCAGGGGAAGAGCAAGAGAAGGCAGGGAAAACCAAGCATGATGCAGGGAAAGGGCATGTTGAGAAGGCAGTGGGAATCAATCTTGAAGCAGGGAAGGAGCAGGAGAAAGTAGAGAAAAACCAAGAGAAAGAAATGAAAATCCAAGAAAAACTTGGGGAAATCTTTGATAAAGCAATGAAATCTGAAGAAAAGACAGGGCAAAATCCTGGCATAGAAAAGAAAATCCAAGACACGGCAGAGAAGAAACAAGAGCATGATGCTAGGGTAGTCCAAGACAAAGTGGAGAAGATCCAAGACGAAGCCAAGAAAATCCAATGAGTGTAAAGAGTTAAAATAATGCAACTGTTCTTAATCAATTATTGCT TGGCAGTTGATCTGAGGACAAGGCCCATCATGTATGGATCTCATTGCTTCGATGTCATGATGAGATTTCTAGTTCTAGAGATAAGATCCTGGAAATCACTTACCAGCAACCTGGCCATCCATTTCGGAAATCGGTACTGTGCTGGTAATGTCATCAAGGCTTAAGTCCTAAGGTCTCCGGTGATAACCAATGCAACACAAACTGTGGTTAATCCTCTGTAAGATTGACTGGATCAGGAAGGCTGGAAGGCTGGAAGTCTGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAATGAAATTCATTCTCCATGTTAGCAACCGTTAATCGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAATGAAATTCATTCTCCATGTAAGCAACCGGTAATCATTTTGCTGCTTCAGTTCAAGTTTGGAGCTTTAAAATGATCACTAGTTGGAAGTAGATTGTTGTAGCTTTTGCCCAACTTCTTTGATTCATTTTTTTTCCCTATCTGCATAGAAGAATCACCAACTGTTCTGTTGATTGTATGTAGATAGGAAGCAGAAGTGCAATGTTAAGGAAAAAAA ]
[+] EMBL AK105254 [ ACACGCGCAGACGCTGCCCCGGCCCCGGCCCCGCCCCCGCCCCCAACACTCTCTCTCGGATCCCCTTTCCTCTCTTCCTTCGCCGCGGGCGCGCCACGGCGGCGACGGGTCGGGTCTCGCTGTCGCCGCCGCTGCTGCCGAAATGGGGTACCTCTCCTGCCGCGCGGACTCGTCGGTGGCGACGTGCCGGTCCATCACCGCCATATCGCCGCTGCCGCTGTCGCGGCGGTCGGGGGTCGGCGGCAGGCGGCGCGCGCTGCCGGCGGCGGCGAGGGAGGGGGATGGTGGGGAGGCGTCGTCCGCCGCCGCCACCATCGAGCGGTTCGCGTACGACGAACTGGAGGCGGCGACCTCCCACTTCGCGGACGCGGCGCTGCTCGGGAGGGGC AGCCACGGGGC GGTGTACAAGGCGGTGCTCGCCTCCGGCCGCGCCGTCGCCGTCAAGCGCCCCTCCCCGCGCCGCCCCGAGGTGGACAACGAGATCCGCATCCTCTCCTCCGTCCGCGGCCCGCGCCTCGTCAACCTCCTCGGCTTCTCCGACTCCGGCGCCGGCGCCGGCGCCGACCAGCAGCAGCAGCAGCACCGCCCGCGCCTGCTCGTCGTCGAGTACATGCCCAACGGCACGCTCTATGAGCTGCTCCATTCCAACCCGCGCCCGCCCGGGTGGCCGCGCCGCGTCCGCCTCGCGCTCCAGACGGCGCGCGCGCTCCGCGCGCTCCACGACGCCGATCCCCCCGTCATCCATCGCGACGTCAAGTCCGCCAACGTCCTGCTCGACGCCAACCTCGACGCGCGCCTCGGCGACTTCGGCCTAGCCCTCCGCGTGCCCAAGCGGCTACCCGGCGACGCCGCCGCCAATGCCGCCGCCACGCCGGCGCCGGCGGGCACGCTCGGGTACCTCGACCCGGCCTACGTCACGCCGGAGAGCCTCAGCACCAAGACCGACGTCTTCAGCTTCGGGATCCTGCTGCTCGAGATCATGAGCGGCCGCAAGGCCATCGACGTCCAGCACTCGCCGCCGTCGGTGGTGGAGTGGGCGGTGCCCCTGCTGCGGAAGGGGAAGGTGGCCTCGCTGTTCGACCCACGGGTGGCGCCGCCGCGTGACCCGGTCACCCGGAGAGACCTAGCCGCTCTGGCGGCGAGCTGCGTGCGGTCGTGCAGGGAGCGGCGGCCGTCGATGGCCGACATAGTTGATCGGCTTGTGGTTCTCAGCAAGGCCGTGTCGGGCAAAATGTGGAACGGACTCGCCGTGGTTGGGAACCCCTGCGCTGTCGTGGATGTCCAGAAGACCATCGCGAAGCGAGCTGCTGCTGCTGCTGCAGGCGATAGAGCCGCGTCGCAGCGGGAGCTGACTTCGGCATTGGCATTTGATGATGATGAGAAGAAAGAGGAGGAGGATGCGCCGAATGCAGGTGCGTTAGAGGAGGATGAGGTGCCATTGGTGGGTGCGAAGAAAGCACCCCGGCCATTGAAGAATGGGAAGATGTTCTCTGAGCCAGGGGCAAGGGAGAGGAGAAATCTCTTGGAGCTCATGGCTCGGATTGATGGTGTCGCCGGCCAAAGATTTGGCATAACTCGGGCAAGAACAGTGCGTGCCGCTAGTGAATCTATCGAAAAAGATGCGGCGGTGTTGCTCCTGAGGAGAAATCAAACTGTGAAAGTACTTGGATCGGAGGCCCTTTCTAAAGCTGATATCTTTTCAAGTTTGGATGCAAAAATCAAGCATGAATTGGGGAAAGAGCAGCAAGAGGAGGCAGGAAAAATCAAGCATGAATTGGTGAAAGAGCAGCAAGAGAAGGCAGGAAATATCAAGCAGGAATTGGTGAAAGAGCAGCAAGAGAAGGCAGGAAATATCAAGCAGGAATCAGGGGAAGAGCAAGAGAAGGCAGGGAAAACCAAGCATGATGCAGGGAAAGGGCATGTTGAGAAGGCAGTGGGAATCAATCTTGAAGCAGGGAAGGAGCAGGAGAAAGTAGAGAAAAACCAAGAGAAAGAAATGAAAATCCAAGAAAAACTTGGGGAAATCTTTGATAAAGCAATGAAATCTGAAGAAAAGACAGGGCAAAATCCTGGCATAGAAAAGAAAATCCAAGACACGGCAGAGAAGAAACAAGAGCATGATGCTAGGGTAGTCCAAGACAAAGTGGAGAAGATCCAAGACGAAGCCAAGAAAATCCAATGAGTGTAAAGAGTTAAAATAATGCAACTGTTCTTAATCAATTATTG ]
[-] EMBL CA761039 [ AATGAGTGTAAAGAGTTAAAATAATGCACCTGTTCTTAATCAATTA TGCTCTGGCAGTTGATCTGAGGACAAGGCCCATCATCTATGGATCTCATTGCTTCGATGTCATGATGAGATTTCTAGTTCTAGAGATAAGATCCTGGAAATCACTTACCAGCAACCTGGCCATCCATTTCGGAAATCGGTACTGTGCTGGTAATGTCATCAAGGCTTAAGTCCTAAGGTCTCCGGTGATAACCAATGCAACACAAACTGTGGTTAATCCTCTGTAAGATTGACTGGATCAGGAAGGCTGGAAGGCTGGAAGTCTGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAATGAAATTCATTCTCCATGTAAGCAACCGGTAATCGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAATGAAATTCATTCTCCATGTAAGCAACCGGTAATCATTTTGCTGCTTCAGTTCAAGTTTGGAGCTTTAAAATGATCCCTAGTTGGAAGTAGATTGTTGTAGCTTTTGCCCAACTTCTTTGATTCA TTTTTTTCCCTATCTGCATAGAAGAATCACCAACTGTTCTGTTGATTGTATGTAGATAGGAAGCAGAAGTGCAATGTTAAGGAAAAAAAAGTATTTTA TCAAAAAAAAA ]
[-] EMBL CA761103 [ TAAAGAGTTAAAATAATGCAACTGTTCTTAATCAATTATTGCT TGGCAGTTGATCTGAGGACAAGGCCCATCATCTATGGATCTCATTGCTTCGATGTCATGATGAGATTTCTAGCTCTAGAGATAAGATCCTGGAAATCACTTACCAGCAACCTGGCCATCCATTTCGGAAATCGGTACTGTGCTGGTAATGTCATCAAGGCTTAAGTCCTAAGGTCTCCGGTGATAACCAATGCAACACAAACTGTGGTTAATCCTCTGTAAGATTGACTGGATCAGGAAGGCTGGAAGGCTGGAAGTCTGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAATGAAATTCATTCTCCATGTAAGCAACCGGTAATCGAGCAGCAAGGCACGGTTGATCAACAATACCTATTGTTGAGCATTTGAGATTTGTTAATGAAATTCATTCTCCATGTAAGCAACCGGTAATCATTTTGCTGCTTCAGTTCAAGTTTGGAGCTTTAAAATGATCCCTAGCTGGAAGTAGATTGTTGTAGCTTTTGCCCAACTTCTTTGATTCA TTTTTTTCCCTATCTGCATAGAAGAATCCCCAACTGTTCTGTTGATTGTATGTAGATAGGAAGCAGAGGTGCAATGTTAAGG AAAAAAAGTATTTTATCCTTTTCAAAAAAAAAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||