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Oryza sativa
cluster # 7571 cluster # 7571       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7571#0 length = 816 sequences # 3  
consensus_7571#1 length = 580 sequences # 1  

consensusID : consensus_7571#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 816
fasta sequence
                              [CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGTACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT]

[+] EMBL AK120232             [CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGTACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT]
[+] EMBL AK062016             [                                     GCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACGCTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTG                                              ]
[+] EMBL CF326645             [                                                                                                                                  GATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAAT                                                                                                                        ]


>consensus_7571#0 CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTC GCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAG CACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTT CGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCA CGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACG CTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTAC ACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACC TACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGC GCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCG TTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACC GCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTT GCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGC ACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGT ACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT



consensusID : consensus_7571#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCAAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTC]

[+] EMBL BF430859             [GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCAAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTC]


>consensus_7571#1 GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGA GTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTG CTGCTGCTGCTGCAAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCT GCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACG ACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCC GCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGA TCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCTACGTGCTCACCTGCGTCGCGTA CCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAG CTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTG CACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7571#0      CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTC 60
consensus_7571#1      -------------------GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTC 41
                                         *****************************************

consensus_7571#0      GCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAG 120
consensus_7571#1      GCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAG 101
                      ************************************************************

consensus_7571#0      CACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTT 180
consensus_7571#1      CACCGGGGCGGATAATCTGCTGCTGCTGCTGCA---------------------AGACTT 140
                      ********************************                      ******

consensus_7571#0      CGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCA 240
consensus_7571#1      CGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCA 200
                      ************************************************************

consensus_7571#0      CGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACG 300
consensus_7571#1      CGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACG 260
                      ************************************************************

consensus_7571#0      CTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTAC 360
consensus_7571#1      CTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTAC 320
                      ************************************************************

consensus_7571#0      ACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACC 420
consensus_7571#1      ACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACC 380
                      ************************************************************

consensus_7571#0      TACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGC 480
consensus_7571#1      TACATCCTGGACGCGGC------------------------------------------- 397
                      *****************                                           

consensus_7571#0      GCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCG 540
consensus_7571#1      ------------------------------------------------------------
                                                                                  

consensus_7571#0      TTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACC 600
consensus_7571#1      ------------------------------TACGTGCTCACCTGCGTCGCGTACCCGACC 427
                                                    ******************************

consensus_7571#0      GCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTT 660
consensus_7571#1      GCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTT 487
                      ************************************************************

consensus_7571#0      GCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGC 720
consensus_7571#1      GCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTGCACATGC 547
                      ******************************************* ****************

consensus_7571#0      ACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGT 780
consensus_7571#1      ACTTGCCGTTGAAACTAGCCAGAATTTATCGTC--------------------------- 580
                      *********************************                           

consensus_7571#0      ACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT 816
consensus_7571#1      ------------------------------------
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)