These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 816 fasta sequence [CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGTACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT] [+] EMBL AK120232 [CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGTACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT] [+] EMBL AK062016 [ GCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACGCTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTG ] [+] EMBL CF326645 [ GATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAAT ] consensusID : consensus_7571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCAAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTC] [+] EMBL BF430859 [GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCAAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7571#0 CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTC 60 consensus_7571#1 -------------------GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTC 41 ***************************************** consensus_7571#0 GCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAG 120 consensus_7571#1 GCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAG 101 ************************************************************ consensus_7571#0 CACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTT 180 consensus_7571#1 CACCGGGGCGGATAATCTGCTGCTGCTGCTGCA---------------------AGACTT 140 ******************************** ****** consensus_7571#0 CGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCA 240 consensus_7571#1 CGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCA 200 ************************************************************ consensus_7571#0 CGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACG 300 consensus_7571#1 CGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACG 260 ************************************************************ consensus_7571#0 CTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTAC 360 consensus_7571#1 CTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTAC 320 ************************************************************ consensus_7571#0 ACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACC 420 consensus_7571#1 ACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACC 380 ************************************************************ consensus_7571#0 TACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGC 480 consensus_7571#1 TACATCCTGGACGCGGC------------------------------------------- 397 ***************** consensus_7571#0 GCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCG 540 consensus_7571#1 ------------------------------------------------------------ consensus_7571#0 TTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACC 600 consensus_7571#1 ------------------------------TACGTGCTCACCTGCGTCGCGTACCCGACC 427 ****************************** consensus_7571#0 GCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTT 660 consensus_7571#1 GCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTT 487 ************************************************************ consensus_7571#0 GCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGC 720 consensus_7571#1 GCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTGCACATGC 547 ******************************************* **************** consensus_7571#0 ACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGT 780 consensus_7571#1 ACTTGCCGTTGAAACTAGCCAGAATTTATCGTC--------------------------- 580 ********************************* consensus_7571#0 ACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT 816 consensus_7571#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||