These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1744 fasta sequence [CGAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGCTTGCCCCGGCGCCCGCCGCTTGTTCGACAAAATGGCTGACCGGAAGAAGTGCAAGGCGGCGGCGGTCGCCACCACGGATGGCGGTGGCGAGGACCGCATCAGCGCCCTTCCGGACGAGGTCCTCCAGCGGGCGCTCTCCTTCCTGCCCTCCCGCGACGTGGTGCGGACGTGCGTGCTCTCCCGCCGCTGGCGCCACCAGTGGAAGTCCGTGCCCGCCCTGCGCATCTACGCGTTCGATGATTGCCGGGACGTCCAGCACCTGAGTGATTTCGTCACCAACTTTCTGCTCCGGCGCAACCGGTTGGCTCTACATGAATGCGACATCACATGCTTTGACGAGGGAGACGGTTGTGAGGTGTTCGGGGAGAACGCCAGACAGTGGATCCGGTATGCTGTATCGTGCCAAGTTCGGGTGCTTCGTGTTTCTGTTGAAGCGCACACCCGTCTATTTGGTGCGCCTCTCAAAGCCCAGCGTTTGAAGAGATTAGAACTTTTCAGCGTGGAGTTGGGGGCCTTCTCCCTTGATTTCTCTAGCTGCAGGGAGTTGGAGGAGTTGGAGCTGGGAGGTTGCATCATCAAAGACAAAGTAAAGCAGATCTTATCAGAATCATTAAGACGTCTGAGAATCGAAGGATGTGATTTTTTCCGAAATCGCACTCGCATTTCTTGCCCAAATCTCATTTCCTTGGAGATTACCGATTTTACCTTGTACACTCCAGTGCTCATGAGCATGCCTTCCTTGGCATCGGCATTTATCAGGTTTGGTGAACACTGTGCTGATTCTTGTGACTGCTACTATTACGGCGAATTTGGTCCCGATTATACTGGATGCCATCACAGTACAGTTAAGGGCAATGGCACTGTGCTTCTCAATGGTTTATCAGATGCCATCCAATTAGAGTTGATAAGTGGTGCCGGAGTGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGAGGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAGTGACATTCTTAGGAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTTGGGACTAGTATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTGATTAAACTCATTCATGTTTGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCTTGAGTAGAAGCTGAAACTGCAGCCTGAACTGAAACACTGCTGAAACTTGTGTGTCCAACAGAGCTCT] [+] EMBL AK101552 [CGAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGCTTGCCCCGGCGCCCGCCGCTTGTTCGACAAAATGGCTGACCGGAAGAAGTGCAAGGCGGCGGCGGTCGCCACCACGGATGGCGGTGGCGAGGACCGCATCAGCGCCCTTCCGGACGAGGTCCTCCAGCGGGCGCTCTCCTTCCTGCCCTCCCGCGACGTGGTGCGGACGTGCGTGCTCTCCCGCCGCTGGCGCCACCAGTGGAAGTCCGTGCCCGCCCTGCGCATCTACGCGTTCGATGATTGCCGGGACGTCCAGCACCTGAGTGATTTCGTCACCAACTTTCTGCTCCGGCGCAACCGGTTGGCTCTACATGAATGCGACATCACATGCTTTGACGAGGGAGACGGTTGTGAGGTGTTCGGGGAGAACGCCAGACAGTGGATCCGGTATGCTGTATCGTGCCAAGTTCGGGTGCTTCGTGTTTCTGTTGAAGCGCACACCCGTCTATTTGGTGCGCCTCTCAAAGCCCAGCGTTTGAAGAGATTAGAACTTTTCAGCGTGGAGTTGGGGGCCTTCTCCCTTGATTTCTCTAGCTGCAGGGAGTTGGAGGAGTTGGAGCTGGGAGGTTGCATCATCAAAGACAAAGTAAAGCAGATCTTATCAGAATCATTAAGACGTCTGAGAATCGAAGGATGTGATTTTTTCCGAAATCGCACTCGCATTTCTTGCCCAAATCTCATTTCCTTGGAGATTACCGATTTTACCTTGTACACTCCAGTGCTCATGAGCATGCCTTCCTTGGCATCGGCATTTATCAGGTTTGGTGAACACTGTGCTGATTCTTGTGACTGCTACTATTACGGCGAATTTGGTCCCGATTATACTGGATGCCATCACAGTACAGTTAAGGGCAATGGCACTGTGCTTCTCAATGGTTTATCAGATGCCATCCAATTAGAGTTGATAAGTGGTGCCGGAGTGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGAGGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAGTGACATTCTTAGGAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTTGGGACTAGTATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTGATTAAACTCATTCATGTTCGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCTTGAGTAGAAGCTGAAACTGCAGCCTGAACTGAAACACTGCTGAAAC ] [+] EMBL AK063985 [ AAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGCTTGCCCCGGCGCCCGCCGCTTGTTCGACAAAATGGCTGACCGGAAGAAGTGCAAGGCGGCGGCGGTCGCCACCACGGATGGCGGTGGCGAGGACCGCATCAGCGCCCTTCCGGACGAGGTCCTCCAGCGGGCGCTCTCCTTCCTGCCCTCCCGCGACGTGGTGCGGACGTGCGTGCTCTCCCGCCGCTGGCGCCACCAGTGGAAGTCCGTGCCCGCCCTGCGCATCTACGCGTTCGATGATTGCCGGGACGTCCAGCACCTGAGTGATTTCGTCACCAACTTTCTGCTCCGGCGCAACCGGTTGGCTCTACATGAATGCGACATCACATGCTTTGACGAGGGAGACGGTTGTGAGGTGTTCGGGGAGAACGCCAGACAGTGGATCCGGTATGCTGTATCGTGCCAAGTTCGGGTGCTTCGTGTTTCTGTTGAAGCGCACACCCGTCTATTTGGTGCGCCTCTCAAAGCCCAGCGTTTGAAGAGATTAGAACTTTTCAGCGTGGAGTTGGGGGCCTTCTCCCTTGATTTCTCTAGCTGCAGGGAGTTGGAGGAGTTGGAGCTGGGAGGTTGCATCATCAAAGACAAAGTAAAGCAGATCTTATCAGAATCATTAAGACGTCTGAGAATCGAAGGATGTGATTTTTTCCGAAATCGCACTCGCATTTCTTGCCCAAATCTCATTTCCTTGGAGATTACCGATTTTACCTTGTACACTCCAGTGCTCATGAGCATGCCTTCCTTGGCATCGGCATTTATCAGGTTTGGTGAACACTGTGCTGATTCTTGTGACTGCTACTATTACGGCGAATTTGGTCCCGATTATACTGGATGCCATCACAGTACAGTTAAGGGCAATGGCACTGTGCTTCTCAATGGTTTATCAGATGCCATCCAATTAGAGTTGATAAGTGGTGCCGGAGTGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGAGGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAGTGACATTCTTAGGAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTTGGGACTAGTATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTGATTAAACTCATTCATGTTTGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCTTGAGTAGAAGCTGAAACTGCAGCCTGAACTGAAACACTGCTGAAACTTGTGTGTCCAACAGAGCTCT] [-] EMBL CF281219 [ CTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGAGGTTTTATTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAGTGACATTAAAAAAAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTAGNGACTAATATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTGATTAAACTCATTCATGTTTGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCT ] consensusID : consensus_7573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [GAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGGAGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAG] [+] EMBL CF281218 [GAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGGAGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7573#0 CGAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGC 60 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 CGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGCTTGCCCC 120 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GGCGCCCGCCGCTTGTTCGACAAAATGGCTGACCGGAAGAAGTGCAAGGCGGCGGCGGTC 180 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GCCACCACGGATGGCGGTGGCGAGGACCGCATCAGCGCCCTTCCGGACGAGGTCCTCCAG 240 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 CGGGCGCTCTCCTTCCTGCCCTCCCGCGACGTGGTGCGGACGTGCGTGCTCTCCCGCCGC 300 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 TGGCGCCACCAGTGGAAGTCCGTGCCCGCCCTGCGCATCTACGCGTTCGATGATTGCCGG 360 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GACGTCCAGCACCTGAGTGATTTCGTCACCAACTTTCTGCTCCGGCGCAACCGGTTGGCT 420 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 CTACATGAATGCGACATCACATGCTTTGACGAGGGAGACGGTTGTGAGGTGTTCGGGGAG 480 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 AACGCCAGACAGTGGATCCGGTATGCTGTATCGTGCCAAGTTCGGGTGCTTCGTGTTTCT 540 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GTTGAAGCGCACACCCGTCTATTTGGTGCGCCTCTCAAAGCCCAGCGTTTGAAGAGATTA 600 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GAACTTTTCAGCGTGGAGTTGGGGGCCTTCTCCCTTGATTTCTCTAGCTGCAGGGAGTTG 660 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GAGGAGTTGGAGCTGGGAGGTTGCATCATCAAAGACAAAGTAAAGCAGATCTTATCAGAA 720 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 TCATTAAGACGTCTGAGAATCGAAGGATGTGATTTTTTCCGAAATCGCACTCGCATTTCT 780 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 TGCCCAAATCTCATTTCCTTGGAGATTACCGATTTTACCTTGTACACTCCAGTGCTCATG 840 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 AGCATGCCTTCCTTGGCATCGGCATTTATCAGGTTTGGTGAACACTGTGCTGATTCTTGT 900 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GACTGCTACTATTACGGCGAATTTGGTCCCGATTATACTGGATGCCATCACAG-TACAGT 959 consensus_7573#1 ----------------GAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGC 44 * *** * * *** * *** * * *** * consensus_7573#0 TAAGGGCAATGGCACTGTGCTTCTCAATGGTTTATCAGATGCCATCCAATTAGAGTTGAT 1019 consensus_7573#1 CTTCTGCGCCGCCGCCGC-CGCCGCCGCGGCAGGTTGGCCGCC-TCCGATC-GAGTC--C 99 ** * * * * * * * ** * * *** *** ** **** consensus_7573#0 AAGTGGTGCCGGAGTGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAA 1079 consensus_7573#1 CGCTGG----GGTGAGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAA 155 *** ** * ********************************************* consensus_7573#0 GCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTA 1139 consensus_7573#1 GCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTA 215 ************************************************************ consensus_7573#0 CTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACG 1199 consensus_7573#1 CTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACG 275 ************************************************************ consensus_7573#0 TACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAA 1259 consensus_7573#1 TACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAA 335 ************************************************************ consensus_7573#0 GCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACA 1319 consensus_7573#1 GCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACA 395 ************************************************************ consensus_7573#0 TGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATG 1379 consensus_7573#1 TGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATG 455 ************************************************************ consensus_7573#0 GGCTTCTGGAGGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGT 1439 consensus_7573#1 GGCTTCTGGGAGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGT 515 ********* ************************************************* consensus_7573#0 GCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGG 1499 consensus_7573#1 GCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGG 575 ************************************************************ consensus_7573#0 TAGAGTGACATTCTTAGGAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTTGGG 1559 consensus_7573#1 TAGAG------------------------------------------------------- 580 ***** consensus_7573#0 ACTAGTATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTG 1619 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 ATTAAACTCATTCATGTTTGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCTTG 1679 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 AGTAGAAGCTGAAACTGCAGCCTGAACTGAAACACTGCTGAAACTTGTGTGTCCAACAGA 1739 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GCTCT 1744 consensus_7573#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||