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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7575#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[CCGTCAGGTCTCGCCTCCGCCGCACTCTCCTCTCTGTCTCCGCCGATCTGCTCTGCCGCGACGCGCCGCCGGCGAGAAGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGGCGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGGAACTGCACTGGCAGACTTGAAAGCAACTCTGGTATCGTATGAATTTTTTTCTGGCGACATTTAAATTCTGCATATCCTCTTCTTCAGTAACCACAACCATTGTTCTATTGCAGGCTGAATTGAAGGAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAAGCTGTCGTCAAGCCAACAGAAGATTGAATTCGTTTTTTATGAAATCCCTGCAAACCTCTGTTCTGTTGGGGCCATAGTAGCTCAACTAGTATTATGATGTTTGCTGTGAATTCATGTATCCATTTTGTGGTTCCTGAGCCCTAACTTGGAAGATCTGGCACTGAACCATCCTTACTTTATGTGCTTGCTTGTTCTTCCTGAAGTACACAGTTAAGCAT]
[+] EMBL AK120302 [CCGTCAGGTCTCGCCTCCGCCGCACTCTCCTCTCTGTCTCCGCCGATCTGCTCTGCCGCGACGCGCCGCCGGCGAGAAGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGGCGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGGAACTGCACTGGCAGACTTGAAAGCAACTCTGGTATCGTATGAATTTTTTTCTGGCGACATTTAAATTCTGCATATCCTCTTCTTCAGTAACCACAACCATTGTTCTATTGCAGGCTGAATTGAAGGAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAAGCTGTCGTCAAGCCAACAGAAGATTGAATTCGTTTTTTATGAAATCCCTGCAAACCTCTGTTCTGTTGGGGCCATAGTAGCTCAACTAGTATTATGATGTTTGCTGTGAATTCATGTATCCATTTTGTGGTTCCTGAGCCCTAACTTGGAAGATCTGGCACTGAACCATCCTTACTTTATGTGCTTGCTTGTTCTTCCTGAAGTACACAGTTAAGCAT]
consensusID : consensus_7575#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence
[CGCACTCTCCTCTCTGTCTCCGCCGATCTGCTCTGCCGCGACG-GCCGCCGGCGAGAAGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGA-CATCCAGTTTCGAGTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGGCGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTGCACTGGCAGACTTGAAAG-AACTCTGGCTGAATTGAAGGAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAAGTTGT-GTTAAG-CAACAG-AGGTTG-ATTNG-TTTTTATG-AATTCCTG--AANCTTTGNTTTGTTGGGGC--TAGTAGTTAGACTAGTATTATGATGTTTGCTGTGAATTCATGTATCCATTTTGTGGTTCCTGAGCCCTAACTTGGAAGATCTGGCACTGAACCATCCTTACTTTATGTGCTTGCTTGTTCTTCCTGAAGTACACAGTTAAGCATGGTTGTGTCCAAAAAAAATAAAAAGA]
[+] EMBL OS0587A [CGCACTCTCCTCTCTGTCTCCGCCGATCTGCTCTGCCGCGACG GCCGCCGGCGAGAAGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGA CATCCAGTTTCGAGTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGGCGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTGCACTGGCAGACTTGAAAG AACTCTGGCTGAATTGAAGGAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAAGTTGT GTTAAG CAACAG AGGTTG ATTNG TTTTTATG AATTCCTG AANCTTTGNTTTGTTGGGGC TAGTAGTTAG ]
[-] EMBL CB683625 [ CTCTGCCGCGACGCGCCGCCGGCGAGAAGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAGTTTCGAGTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGGCGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTGCACTGGCAGACTTGAAAGCAACTCTGGCTGAATTGAAGGAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAAGCTGTCGTCAAGCCAACAGAAGATTGAATTCGTTTTTTATGAAATCCCTGCAAACCTCTGTTCTGTTGGGGCCATAGTAGCTCAACTAGTATTATGATGTTTGCTGTGAATTCATGTATCCATTTTGTGGTTCCTGAGCCCTAACTTGGAAGATCTGGCACTGAACCATCCTTACTTTATGTGCTTGCTTGTTCTTCCTGAAGTACACAGTTAAGCATGGTTGTGTCCAAAAAAAATAAAAAGA]
consensusID : consensus_7575#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[CTGAAGATCAAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGGCGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAGCAGGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTGCACTGGCAGACTTGAAAGCAACTCTGGCTGAATTGAAGGAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAAGCTGTCGTCAAGCCACAGAAGATTGAACTCGAACTCATTTTTATGAAATCCCTGCAAACCTTCCGTTCTGTTGGGGCCATAGTAGCTCAACTAGTATTATGATGTTTGCTGTGAATTCATGTATCCATTTTGTGGCTCCTGAGCCCTAACTTGGAAGAGATCTGGCACTGAACCACCCTTTATGTACTTGCTTGTTCTTCACTGAAGTACACAGTTAAGCATGGTTGTGTCAAAAA]
[+] EMBL BI804588 [CTGAAGATCAAGACGTCGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGGCGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAGCAGGAGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTGCACTGGCAGACTTGAAAGCAACTCTGGCTGAATTGAAGGAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAAGCTGTCGTCAAGCCACAGAAGATTGAACTCGAACTCATTTTTATGAAATCCCTGCAAACCTTCCGTTCTGTTGGGGCCATAGTAGCTCAACTAGTATTATGATGTTTGCTGTGAATTCATGTATCCATTTTGTGGCTCCTGAGCCCTAACTTGGAAGAGATCTGGCACTGAACCACCCTTTATGTACTTGCTTGTTCTTCACTGAAGTACACAGTTAAGCATGGTTGTGTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7575#0 CCGTCAGGTCTCGCCTCCGCCGCACTCTCCTCTCTGTCTCCGCCGATCTGCTCTGCCGCG 60
consensus_7575#1 --------------------CGCACTCTCCTCTCTGTCTCCGCCGATCTGCTCTGCCGCG 40
consensus_7575#2 ------------------------------------------------------------
consensus_7575#0 ACGCGCCGCCGGCGAGAAGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGAGCATCCAG 120
consensus_7575#1 ACG-GCCGCCGGCGAGAAGGGACGGCCTCCTCTCCTTCCCGACCCCGCGCGA-CATCCAG 98
consensus_7575#2 ------------------------------------------------------------
consensus_7575#0 TTTCGAGTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCA-GACGT 179
consensus_7575#1 TTTCGAGTTTCTTCTGGATTTCTAGGATGGCGACTCTGAGGAACCTGAAGATCAAGACGT 158
consensus_7575#2 --------------------------------------------CTGAAGATCAAGACGT 16
********** *****
consensus_7575#0 CGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGG 239
consensus_7575#1 CGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGG 218
consensus_7575#2 CGACCTGCAAGAGGATCGTCAAGGAGCTCCGCTCCTACGAGAAGGAGGTGGAGAAGGAGG 76
************************************************************
consensus_7575#0 CGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGG 299
consensus_7575#1 CGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAACAGG 278
consensus_7575#2 CGGCCAAGACTGCTGACATGAAGGAGAAAGGCGCCGACCCCTACGATCTCAAGCAGCAGG 136
******************************************************* ****
consensus_7575#0 AGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGGAACTG 359
consensus_7575#1 AGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTG 338
consensus_7575#2 AGAATGTTTTAGCCGAGTCAAGGATGATGGTCCCAGACTGCCATAAGCGACTTGAAACTG 196
****************************************************** *****
consensus_7575#0 CACTGGCAGACTTGAAAGCAACTCTGGTATCGTATGAATTTTTTTCTGGCGACATTTAAA 419
consensus_7575#1 CACTGGCAGACTTGAAAG-AACTCTGG--------------------------------- 364
consensus_7575#2 CACTGGCAGACTTGAAAGCAACTCTGG--------------------------------- 223
****************** ********
consensus_7575#0 TTCTGCATATCCTCTTCTTCAGTAACCACAACCATTGTTCTATTGCAGGCTGAATTGAAG 479
consensus_7575#1 -------------------------------------------------CTGAATTGAAG 375
consensus_7575#2 -------------------------------------------------CTGAATTGAAG 234
***********
consensus_7575#0 GAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAA 539
consensus_7575#1 GAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAA 435
consensus_7575#2 GAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAA 294
************************************************************
consensus_7575#0 GCTGTCGTCAAGCCAACAGAAGATTGAATTCGT-----TTTTTATGAAATCCCTGCAAAC 594
consensus_7575#1 GTTGT-GTTAAGC-AACAGAGG--TTGATTNGT-----TTTT-ATGAATTCCT---GAAN 482
consensus_7575#2 GCTGTCGTCAAGC-CACAGAAGATTGAACTCGAACTCATTTTTATGAAATCCCTGCAAAC 353
* *** ** **** ***** * * * * * **** ***** *** **
consensus_7575#0 CTCT-GTTCTGTTGGGGCCATAGTAGCTCAACTAGTATTATGATGTTTGCTGTGAATTCA 653
consensus_7575#1 CTTT-GNTTTGTTGGGGC--TAGTAGTTAGACTAGTATTATGATGTTTGCTGTGAATTCA 539
consensus_7575#2 CTTCCGTTCTGTTGGGGCCATAGTAGCTCAACTAGTATTATGATGTTTGCTGTGAATTCA 413
** * * ********* ****** * ******************************
consensus_7575#0 TGTATCCATTTTGTGGTTCCTGAGCCCTAACTTGGAAGA--TCTGGCACTGAACCATCCT 711
consensus_7575#1 TGTATCCATTTTGTGGTTCCTGAGCCCTAACTTGGAAGA--TCTGGCACTGAACCATCCT 597
consensus_7575#2 TGTATCCATTTTGTGGCTCCTGAGCCCTAACTTGGAAGAGATCTGGCACTGAACCACCCT 473
**************** ********************** *************** ***
consensus_7575#0 TACTTTATGTGCTTGCTTGTTCTTC-CTGAAGTACACAGTTAAGCAT------------- 757
consensus_7575#1 TACTTTATGTGCTTGCTTGTTCTTC-CTGAAGTACACAGTTAAGCATGGTTGTGTCCAAA 656
consensus_7575#2 ----TTATGTACTTGCTTGTTCTTCACTGAAGTACACAGTTAAGCATGGTTGTGTCAAAA 529
****** ************** *********************
consensus_7575#0 -------------
consensus_7575#1 AAAAATAAAAAGA 669
consensus_7575#2 A------------ 530
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||