cluster # 7576

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Oryza sativa
cluster # 7576 cluster # 7576 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7576#0 length = 833 sequences # 3

consensus_7576#1 length = 568 sequences # 1

consensusID : consensus_7576#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 833
fasta sequence

                              [TGTGGATAAGAGATTCTGAAGCTAGGGTGCTATCCATCTAGCAATCGAGCTTCTTCAGCAAAACTACAAAAGAACACTATGTCGAGCAACGTGGATTCAAAGACATCCAACAAAGCCTCCTATCCTCTTGCATCTTAAGCCATTGAAACAACAGCAGCTCAATCCCAACATATTTACTCTTCTTACCTTCTCCATTGCATATATAATAGACACAGCTAGCTTTGTTGTACCATTGAATCAATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATATCTCAGAGGTTATAATAAGGTTGGGAAACGATTTTTCTAAAAAAAAAAAAAAAA]

[+] EMBL AK062143             [TGTGGATAAGAGATTCTGAAGCTAGGGTGCTATCCATCTAGCAATCGAGCTTCTTCAGCAAAACTACAAAAGAACACTATGTCGAGCAACGTGGATTCAAAGACATCCAACAAAGCCTCCTATCCTCTTGCATCTTAAGCCATTGAAACAACAGCAGCTCAATCCCAACATATTTACTCTTCTTACCTTCTCCATTGCATATATAATAGACACAGCTAGCTTTGTTGTACCATTGAATCAATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTGGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTTACGAGTGAT                                                                                                        ]
[+] EMBL AK120328             [                                                                                                                                                                                                                                               AATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTA                                                            ]
[-] EMBL CF324670             [                                                                                                                                                                                                                                                                                                                                                                                           AAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATATCTCAGAGGTTATAATAAGGTTGGGAAACGATTTTTCTAAAAAAAAAAAAAAAA]




>consensus_7576#0
TGTGGATAAGAGATTCTGAAGCTAGGGTGCTATCCATCTAGCAATCGAGCTTCTTCAGCA
AAACTACAAAAGAACACTATGTCGAGCAACGTGGATTCAAAGACATCCAACAAAGCCTCC
TATCCTCTTGCATCTTAAGCCATTGAAACAACAGCAGCTCAATCCCAACATATTTACTCT
TCTTACCTTCTCCATTGCATATATAATAGACACAGCTAGCTTTGTTGTACCATTGAATCA
ATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCT
TCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTG
GCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAAC
ATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATG
AAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGC
TGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATT
TTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGAT
CCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTT
ACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATAT
CTCAGAGGTTATAATAAGGTTGGGAAACGATTTTTCTAAAAAAAAAAAAAAAA

consensusID : consensus_7576#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [GACGAGACAAGGGGGATTGAATCAATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATCTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATATCACA]

[+] EMBL CA765702             [GACGAGACAAGGGGGATTGAATCAATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATCTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATATCACA]




>consensus_7576#1
GACGAGACAAGGGGGATTGAATCAATCATCAATTTTGCAGCAATAGCTAGACAATCAGCG
AGACAAAGTCACAAAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGT
GAATGCCTGAAGATCAACAAGCTGGCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAG
AAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGG
GTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAAC
TGCTTCGAGACACTTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGC
TGTGTTCCATCTGATTTGTTGATTTTCTGGTCATTATTTTTGCGGGGTTATATTATATTT
GTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTG
AAGTGATATGTGTAATCTGCTCTTACGAGTGATTCCGACTGTGAAGTATTATTTGTTATA
TAAAGATATACGTGCTATTGATATCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7576#0      TGTGGATAAGAGATTCTGAAGCTAGGGTGCTATCCATCTAGCAATCGAGCTTCTTCAGCA 60
consensus_7576#1      ------------------------------------------------------------
                                                                                  

consensus_7576#0      AAACTACAAAAGAACACTATGTCGAGCAACGTGGATTCAAAGACATCCAACAAAGCCTCC 120
consensus_7576#1      ------------------------------------------------------------
                                                                                  

consensus_7576#0      TATCCTCTTGCATCTTAAGCCATTGAAACAACAGCAGCTCAATCCCAACATATTTACTCT 180
consensus_7576#1      ------------------------------------------------------------
                                                                                  

consensus_7576#0      TCTTACCTTCTCCATTGCATATATAATAGACACAGCTAGCTTTGTTGTACCATTGAATCA 240
consensus_7576#1      ---------------------------------GACGAGACAAGGGG---GATTGAATCA 24
                                                         * **    *  *    *********

consensus_7576#0      ATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCT 300
consensus_7576#1      ATCATCAATTTTGCAGCAATAGCTAGACAATCAGCGAGACAAAGTCACAAAACCATGGCT 84
                      ************************************************************

consensus_7576#0      TCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTG 360
consensus_7576#1      TCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTG 144
                      ************************************************************

consensus_7576#0      GCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAAC 420
consensus_7576#1      GCAGCAGCAAGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAAC 204
                      ************************************************************

consensus_7576#0      ATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATG 480
consensus_7576#1      ATCAGCGGTGCACCTGTAGCTGCCGCTGCCGTCAGGGTGGTTGTGAGCAAGCAAGTGATG 264
                      ************************************************************

consensus_7576#0      AAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGC 540
consensus_7576#1      AAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACACTTGTCCCTCGC 324
                      ************************************************************

consensus_7576#0      TGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATT 600
consensus_7576#1      TGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATT 384
                      ************************************************************

consensus_7576#0      TTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGAT 660
consensus_7576#1      TTCTGGTCATTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGAT 444
                      ************************************************************

consensus_7576#0      CCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATTTGCTCTT 720
consensus_7576#1      CCTTTCGCACGCGCGATTATGTATTTTCTTTCTTTGAAGTGATATGTGTAATCTGCTCTT 504
                      **************************************************** *******

consensus_7576#0      ACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATAT 780
consensus_7576#1      ACGAGTGATTCCGACTGTGAAGTATTATTTGTTATATAAAGATATACGTGCTATTGATAT 564
                      ************************************************************

consensus_7576#0      CTCAGAGGTTATAATAAGGTTGGGAAACGATTTTTCTAAAAAAAAAAAAAAAA 833
consensus_7576#1      CACA------------------------------------------------- 568
                      * **