These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2186 fasta sequence [TTTTTTTTTTTTAATGGTACTGGTATCCTCGAGGCCTTGTATATTGCTTTTGCATTAAAGGATCCTCTCAATCTAAATACAGTCTTTTTTTTTCTGAAATTTACTACGTCATCCAACAAGAAAAGTAAAGAAAAAACACATTACATGTAAATTGGAGCATACTGTATTGTTTTTCATAGGAAAGGGCTAGAAAGATGGATGAATTTGGTAAACTTTCAGTGAAAAACTAAGCTCTCTATCTTTCTAATTTAAAGTTGGGGTAAAATATCTATCTTTGTAATTTAAAGTTGGGGTAAAAAGGTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGAGATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCGGAAGCTGAAGCGCACACAATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCAT-GGCGTGCTGCTTCGCCTGCCTGGGCGCTGGCGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGAAAGAGATAACCCACCAAACCTGGCCTCATCGACAGTGATGAAGCAGGATCAGGATTCGTTTCAATTAGCTGCTAACGAGGACATCCTTGTGAGCAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCGCTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAGTGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCAACGGACTGCAAGGCAACAGGGAGTTCCTTGTTGAAGTTCTTATGCTCAGCATGCTGCACCACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTTATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGTCACGGCTTGATTGGAATACAAGGATGAAGATAGCTGCTGGTGCAGCGAAGGGTTTGGAATATTTGCATGACAAAGCCAATCCTCCAGTCATATACCGAGATTTGAAGTGTTCAAATATCTTGCTTGGGGAGGGATATCACCCAAAATTGTCTGACTTTGGATTGGCAAAGCTCGGCCCAATTGGCGATAAATCCCATGTTTCCACTAGAGTGATGGGTACATATGGATACTGTGCTCCTGAGTATGCTATGACTGGCCAGCTGACTCTCAAGTCAGATGTTTATAGTTTTGGTGTTGTTCTGTTGGAGATCATTACAGGACGAAGAGCTATCGACAACACCCGAGCAGCAGGGGAGCAAAATCTTGTTGCATGGGCCCGGCCCTTGTTCAAGGACAGGAGGAAGTTCCCCCAGATGGCAGATCCAGCGCTTCATGGTCAGTATCCATCGAGAGGATTGTACCAGGCCTTGGCTGTTGCTGCGATGTGTGTCCAAGAGCAACCGACCATGAGACCCCTGATCGGGGATGTTGTTACAGCTCTCGCTTACCTTGCCTCCCAGACTTATGATCCAGAGGCACATGGCGTCCATCACACGTCACGTTTGATGTCTCCCGGCACACAAGGTGTATGAGGGATGCAGACTTAGGCTGAGGAGGTGCTGTAGAACAGAAAGCAGGAATTAAGGCTTCAGAAAGCCTAGAATATTTTTTGCTAGATATGGTACCTGAGGAGATGTTGCTGACAGTCCATGGAGATGACCAGCCCAGAGATTTTGTTCATAGCAAGAGAAAGAGAATCATAGAGAGAAATGAGATGGTTCCTGGTTTCTGCAACATGGAATGGTGATAGATTGATTTGTTTTCTCATGATAGGGATGGCTGCTGTTGTTGTACATGTGAATTTCTTTCTCGAGTCTGTATTTACATCAGTGTAGGAGTAGCCTGTAGCGTAGTACATTTGGGTTCAAGGAATTTTTGTCATCTCTTTGTTCCCTGTGGGTGTGAGTTTCGGTTGCGTGCTGGAGGGTTGTCAGCTGCAGTTTCAGTTGCCTGGTGATGTTATTGCGTATGCCTCAGACAGTATGCCATCACTTACTATTGATGCG] [+] EMBL CF281397 [TTTTTTTTTTTTAATGGTACTGGTATCCTCGAGGCCTTGTATATTGCTTTTGCATTAAAGGATCCTCTCAATCTAAATACAGTCTTTTTTTTTCTGAAATTTACTACGTCATCCAACAAGAAAAGTAAAGAAAAAACACATTACATGTAAATTGGAGCATACTGTATTGTTTTTCATAGGAAAGGGCTAGAAAGATGGATGAATTTGGTAAACTTTCAGTGAAAAACTAAGCTCTCTATCTTTCTAATTTAAAGTTGGGGTAAAATATCTATCTTTGTAATTTAAAGTTGGGGTAAAAAGGTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGAGATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCGGAAGCTGAAGCGCACACAATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCATGGGCGTGCTGCTTCGCCTGCCT ] [+] EMBL AK072806 [ CGCACACAATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCAT GGCGTGCTGCTTCGCCTGCCTGGGCGCTGGCGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGAAAGAGATAACCCACCAAACCTGGCCTCATCGACAGTGATGAAGCAGGATCAGGATTCGTTTCAATTAGCTGCTAACGAGGACATCCTTGTGAGCAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCGCTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAGTGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCAACGGACTGCAAGGCAACAGGGAGTTCCTTGTTGAAGTTCTTATGCTCAGCATGCTGCACCACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTTATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGTCACGGCTTGATTGGAATACAAGGATGAAGATAGCTGCTGGTGCAGCGAAGGGTTTGGAATATTTGCATGACAAAGCCAATCCTCCAGTCATATACCGAGATTTGAAGTGTTCAAATATCTTGCTTGGGGAGGGATATCACCCAAAATTGTCTGACTTTGGATTGGCAAAGCTCGGCCCAATTGGCGATAAATCCCATGTTTCCACTAGAGTGATGGGTACATATGGATACTGTGCTCCTGAGTATGCTATGACTGGCCAGCTGACTCTCAAGTCAGATGTTTATAGTTTTGGTGTTGTTCTGTTGGAGATCATTACAGGACGAAGAGCTATCGACAACACCCGAGCAGCAGGGGAGCAAAATCTTGTTGCATGGGCCCGGCCCTTGTTCAAGGACAGGAGGAAGTTCCCCCAGATGGCAGATCCAGCGCTTCATGGTCAGTATCCATCGAGAGGATTGTACCAGGCCTTGGCTGTTGCTGCGATGTGTGTCCAAGAGCAACCGACCATGAGACCCCTGATCGGGGATGTTGTTACAGCTCTCGCTTACCTTGCCTCCCAGACTTATGATCCAGAGGCACATGGCGTCCATCACACGTCACGTTTGATGTCTCCCGGCACACAAGGTGTATGAGGGATGCAGACTTAGGCTGAGGAGGTGCTGTAGAACAGAAAGCAGGAATTAAGGCTTCAGAAAGCCTAGAATATTTTTTGCTAGATATGGTACCTGAGGAGATGTTGCTGACAGTCCATGGAGATGACCAGCCCAGAGATTTTGTTCATAGCAAGAGAAAGAGAATCATAGAGAGAAATGAGATGGTTCCTGGTTTCTGCAACATGGAATGGTGATAGATTGATTTGTTTTCTCATGATAGGGATGGCTGCTGTTGTTGTACATGTGAATTTCTTTCTCGAGTCTGTATTTACATCAGTGTAGGAGTAGCCTGTAGCGTAGTACATTTGGGTTCAAGGAATTTTTGTCATCTCTTTGTTCCCTGTGGGTGTGAGTTTCGGTTGCGTGCTGGAGGGTTGTCAGCTGCAGTTTCAGTTGCCTGGTGATGTTATTGCGTATGCCTCAGACAGTATGCCATCACTTACTATTGATGCG] [+] EMBL AK072306 [ ATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCGCTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAGTGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCAACGGACTGCAAGGCAACAGGGAGTTTCTTGTTGAAGTTCTTATGCTCAGCATGCTGCACCACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTTATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGTCACGGCTTGATTGGAATACAAGGATGAAGATAGCTGCTGGTGCAGCGAAGGGTTTGGAATATTTGCATGACAAAGCCAATCCTCCAGTCATATACCGAGATTTGAAGTGTTCAAATATCTTGCTTGGGGAGGGATATCACCCAAAATTGTCTGACTTTGGATTGGCAAAGCTCGGCCCAATTGGCGATAAATCCCATGTTTCCACTAGAGTGATGGGTACATATGGATACTGTGCTCCTGAGTATGCTATGACTGGCCAGCTGACTCTCAAGTCAGATGTTTATAGTTTTGGTGTTGTTCTGTTGGAGATCATTACAGGACGAAGAGCTATCGACAACACCCGAGCAGCAGGGGAGCAAAATCTTGTTGCATGGGCCCGGCCCTTGTTCAAGGACAGGAGGAAGTTCCCCCAGATGGCAGATCCAGCGCTTCATGGTCAGTATCCATCGAGAGGATTGTACCAGGCCTTGGCTGTTGCTGCGATGTGTGTCCAAGAGCAACCGACCATGAGACCCCTGATCGGGGATGTTGTTACAGCTCTCGCTTACCTTGCCTCCCAGACTTATGATCCAGAGGCACATGGCGTCCATCACACGTCACGTTTGATGTCTCCCGGCACACAAGGTGTATGAGGGATGCAGACTTAGGCTGAGGAGGTGCTGTAGAACAGAAAGCAGGAATTAAGGCTTCAGAAAGCCTAGAATATTTTTTGCTAGATATGGTACCTGAGGAGATGTTGCTGACAGTCCATGGAGATGACCAGCCCAGAGATTTTGTTCATAGCAAGAGAAAGAGAATCATAGAGAGAAATGAGATGGTTCCTGGTTTCTGCAACATGGAATGGTGATAGATTGATTTGTTTTCTCATGATAGGGATGGCTGCTGTTGTTGTACATGTGAATTTCTTTCTCGAGTCTGTATTTACATCAGTGTAGGAGTAGCCTGTAGCGTAGTACATTTGGGTTCAAGGAATTTTTGTCATCTCTTTGTTCCCTGTGGGTGTGAGTTTCGGTTGCGTGCTGGAGGGTTGTCAGCTGCAGTTTCAGTTGCCTGGTGATGTTATTGCGTATGCCTCAGACAGTATGCCATCACTTACTATTGATGCG] consensusID : consensus_7577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [AAAGGTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGAGATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCGGAAGCTGAAGCGCACACTATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCATGGCGTGCTGCTTCGCCTGCCTGGGAAAAAAAGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGGTGATCCGTACCTGCCCCTCGGTCGCTTCTTTCTTTCTTTCTTTCTCGCAGAGAGCGTATTGCCTTAACCTGGTTAG] [-] EMBL CF281398 [AAAGGTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGAGATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCGGAAGCTGAAGCGCACACTATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCATGGCGTGCTGCTTCGCCTGCCTGGGAAAAAAAGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGGTGATCCGTACCTGCCCCTCGGTCGCTTCTTTCTTTCTTTCTTTCTCGCAGAGAGCGTATTGCCTTAACCTGGTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7577#0 TTTTTTTTTTTTAATGGTACTGGTATCCTCGAGGCCTTGTATATTGCTTTTGCATTAAAG 60 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 GATCCTCTCAATCTAAATACAGTCTTTTTTTTTCTGAAATTTACTACGTCATCCAACAAG 120 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 AAAAGTAAAGAAAAAACACATTACATGTAAATTGGAGCATACTGTATTGTTTTTCATAGG 180 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 AAAGGGCTAGAAAGATGGATGAATTTGGTAAACTTTCAGTGAAAAACTAAGCTCTCTATC 240 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 TTTCTAATTTAAAGTTGGGGTAAAATATCTATCTTTGTAATTTAAAGTTGGGGTAAAAAG 300 consensus_7577#1 --------------------------------------------------------AAAG 4 **** consensus_7577#0 GTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGA 360 consensus_7577#1 GTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGA 64 ************************************************************ consensus_7577#0 GATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCG 420 consensus_7577#1 GATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCG 124 ************************************************************ consensus_7577#0 GAAGCTGAAGCGCACACAATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTG 480 consensus_7577#1 GAAGCTGAAGCGCACACTATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTG 184 ***************** ****************************************** consensus_7577#0 CTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCA 540 consensus_7577#1 CTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCA 244 ************************************************************ consensus_7577#0 TGGCGTGCTGCTTCGCCTGCCTGGGCGCTGGCGGCGGGAAGATGAAGAAGAAGAAGAAGT 600 consensus_7577#1 TGGCGTGCTGCTTCGCCTGCCTGGGAAAAAAAGGCGGGAAGATGAAGAAGAAGAAGAAGT 304 ************************* **************************** consensus_7577#0 CGCCGCCTCAGATCCCACCGGCCTCAGAAAGAGATAACCCACCAAACCTGGCCTCATCGA 660 consensus_7577#1 CGCCGCCTCAGATCCCACCGGCCTCAGGTGATCCGTACCTGCC--CCTCGGTCGCTTCTT 362 *************************** *** ** * ** * * ** consensus_7577#0 CAGTGATGAAGCAGGATCAGGATTCGTTTCAATTAGCTGCTAACGAGGACATCCTTGTGA 720 consensus_7577#1 TCTTTCTTTCTTTCTCGCAGAGAGCGTATTGCCTTAAC-CTGGTTAG------------- 408 * * *** *** * * ** ** consensus_7577#0 GCAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCG 780 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 CTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAG 840 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 TGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCA 900 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 ACGGACTGCAAGGCAACAGGGAGTTCCTTGTTGAAGTTCTTATGCTCAGCATGCTGCACC 960 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 ACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTT 1020 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 ATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGT 1080 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 CACGGCTTGATTGGAATACAAGGATGAAGATAGCTGCTGGTGCAGCGAAGGGTTTGGAAT 1140 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 ATTTGCATGACAAAGCCAATCCTCCAGTCATATACCGAGATTTGAAGTGTTCAAATATCT 1200 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 TGCTTGGGGAGGGATATCACCCAAAATTGTCTGACTTTGGATTGGCAAAGCTCGGCCCAA 1260 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 TTGGCGATAAATCCCATGTTTCCACTAGAGTGATGGGTACATATGGATACTGTGCTCCTG 1320 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 AGTATGCTATGACTGGCCAGCTGACTCTCAAGTCAGATGTTTATAGTTTTGGTGTTGTTC 1380 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 TGTTGGAGATCATTACAGGACGAAGAGCTATCGACAACACCCGAGCAGCAGGGGAGCAAA 1440 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 ATCTTGTTGCATGGGCCCGGCCCTTGTTCAAGGACAGGAGGAAGTTCCCCCAGATGGCAG 1500 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 ATCCAGCGCTTCATGGTCAGTATCCATCGAGAGGATTGTACCAGGCCTTGGCTGTTGCTG 1560 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 CGATGTGTGTCCAAGAGCAACCGACCATGAGACCCCTGATCGGGGATGTTGTTACAGCTC 1620 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 TCGCTTACCTTGCCTCCCAGACTTATGATCCAGAGGCACATGGCGTCCATCACACGTCAC 1680 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 GTTTGATGTCTCCCGGCACACAAGGTGTATGAGGGATGCAGACTTAGGCTGAGGAGGTGC 1740 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 TGTAGAACAGAAAGCAGGAATTAAGGCTTCAGAAAGCCTAGAATATTTTTTGCTAGATAT 1800 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 GGTACCTGAGGAGATGTTGCTGACAGTCCATGGAGATGACCAGCCCAGAGATTTTGTTCA 1860 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 TAGCAAGAGAAAGAGAATCATAGAGAGAAATGAGATGGTTCCTGGTTTCTGCAACATGGA 1920 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 ATGGTGATAGATTGATTTGTTTTCTCATGATAGGGATGGCTGCTGTTGTTGTACATGTGA 1980 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 ATTTCTTTCTCGAGTCTGTATTTACATCAGTGTAGGAGTAGCCTGTAGCGTAGTACATTT 2040 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 GGGTTCAAGGAATTTTTGTCATCTCTTTGTTCCCTGTGGGTGTGAGTTTCGGTTGCGTGC 2100 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 TGGAGGGTTGTCAGCTGCAGTTTCAGTTGCCTGGTGATGTTATTGCGTATGCCTCAGACA 2160 consensus_7577#1 ------------------------------------------------------------ consensus_7577#0 GTATGCCATCACTTACTATTGATGCG 2186 consensus_7577#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||