cluster # 7583

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Oryza sativa
cluster # 7583 cluster # 7583 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7583#0 length = 1669 sequences # 3

consensus_7583#1 length = 261 sequences # 1

consensusID : consensus_7583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1669
fasta sequence

                              [GCCGTCTCCGCCTCCGCCTTCGCCATCGCCTAATCCTCACCTCACCTCCGCCATTTTCACTGCGGGCTTCCGCTTCCGAGCTCGAAGGCGAGCGCCACCGCGAGGAGGGGGGGCTAGGGTTTTGGGGTTGTCGCGTCGTGGGGGACGGGATGGGGTACCTCCTCCTCGCGCCGTCGCCGGCGCCGCGGCCGCTCGCGTTCCGGTGCCGCCGAGGAGGCCGCGCGCGGAGAGGCGCGGCCATCGTCGCGTCGAGCTCGGCGTCGTCGTCGTCGTCGTCCGGTGATGCCGGCCCATCCCACTCGGCGGCGGCGGCGGGGGCGTACGTGCTGGCGCGGCGGGGCGTGCTCCTCGGCGTCTCGGCGCTCCCGCTCCTCCGCGCCAGGGAAGCCGCGGCGGCGGCCGCGGTGGCCACGCCTAACAGCGGGGATCTCGCAACGGAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGGGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTCACGCAAGAACAAACTCCTGGGAATCCACTTTCTGGTCTTTTGAATGCAATTGCAGTTGCTGCCTCCGGTGTTCTTGCTGGACTGTATGGCACTTCTCAACAGGAAAAGAAGGCCCTGGAATCCGTCGTCTCATCTATGGAGAGCAAACTGGCTGAAAATGAGGCAGCAATCTCATTGATGAGGGAAAACTACGAGAAAAGATTGCTGGATCAACAAACAGCACAAAAGAAGCAAGCAATGAAGTTTCAGGAGCAGGAAGCCTCTCTTTTAGATCAGTTGTCTTCAACAAAAAAGACGGTAACTTCGCTAAGTGAAGAATTCAGAAGGGAGAAGACACTGGCTGAGGAGCTTAGGGAAGAAATACGTCGACTAGAGAGCAGTCTTGCACAAGCTGGGGATGACAAAGATGTTCTTGAAGCCAAACTGAAGGAAAAGTTGGGTGATGTCAACATTTTGCAGGAAAAAGTAAGTTTGCTTAGCCAAGAAATTGATAATAAGGGTATACGCATCAGGGAACTCAGTTCATTACTTTCGTCAAAGGAAGCAGACTACCGTAATCTGTGCTCTTTCTCTGACCAAACTAAAGAGAGTCTAGAACTTGCAGAAGCTAAAATACAGCAACTGGAGGAAGAGGTTCATAGAACTAGAAATGATCTTTCTTCTAAGATATCTTCAATTGATTTACTGAATGAGGAACTTCAAGCACTGAACTCTGCAAAGAATGAAGCTGAGGAAAAGCTAAGTGAGTTAACAAAAGATTATACAGACCTGAAGGCTTCTTCTGAAGCAAGAGAGAGCCGCAACTCTGAGCTACTATTAGAAAAAGATAATATGATCAAACAGCTTGATGGAAAACTCTCTGATGCATTAAGTGATTCTAGCAAAGACCGTGAGAACATCGCTGCGCTGAACAAGGAATTGGATGCAACAAAAGCAATGCTAGAGAATGAAGTTGCTGCAGTTAAAAGTTTAAGAGAATCACTTCAATCCACAGAGGAGGCACTGACAGATTCCAGAAGTGAGGTATCCAAACTTTCAGTGGAACTTGATGAAGCAAATAGAATGAACCAGGACCTGGTGCTGCAAATTTCTAAACTCCAGGATGAGTTCAATGAAATGCAAGAGGGCCT]

[+] EMBL AK120377             [GCCGTCTCCGCCTCCGCCTTCGCCATCGCCTAATCCTCACCTCACCTCCGCCATTTTCACTGCGGGCTTCCGCTTCCGAGCTCGAAGGCGAGCGCCACCGCGAGGAGGGGGGGCTAGGGTTTTGGGGTTGTCGCGTCGTGGGGGACGGGATGGGGTACCTCCTCCTCGCGCCGTCGCCGGCGCCGCGGCCGCTCGCGTTCCGGTGCCGCCGAGGAGGCCGCGCGCGGAGAGGCGCGGCCATCGTCGCGTCGAGCTCGGCGTCGTCGTCGTCGTCGTCCGGTGATGCCGGCCCATCCCACTCGGCGGCGGCGGCGGGGGCGTACGTGCTGGCGCGGCGGGGCGTGCTCCTCGGCGTCTCGGCGCTCCCGCTCCTCCGCGCCAGGGAAGCCGCGGCGGCGGCCGCGGTGGCCACGCCTAACAGCGGGGATCTCGCAACGGAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGGGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTCACGCAAGAACAAACTCCTGGGAATCCACTTTCTGGTCTTTTGAATGCAATTGCAGTTGCTGCCTCCGGTGTTCTTGCTGGACTGTATGGCACTTCTCAACAGGAAAAGAAGGCCCTGGAATCCGTCGTCTCATCTATGGAGAGCAAACTGGCTGAAAATGAGGCAGCAATCTCATTGATGAGGGAAAACTACGAGAAAAGATTGCTGGATCAACAAACAGCACAAAAGAAGCAAGCAATGAAGTTTCAGGAGCAGGAAGCCTCTCTTTTAGATCAGTTGTCTTCAACAAAAAAGACGGTAACTTCGCTAAGTGAAGAATTCAGAAGGGAGAAGACACTGGCTGAGGAGCTTAGGGAAGAAATACGTCGACTAGAGAGCAGTCTTGCACAAGCTGGGGATGACAAAGATGTTCTTGAAGCCAAACTGAAGGAAAAGTTGGGTGATGTCAACATTTTGCAGGAAAAAGTAAGTTTGCTTAGCCAAGAAATTGATAATAAGGGTATACGCATCAGGGAACTCAGTTCATTACTTTCGTCAAAGGAAGCAGACTACCGTAATCTGTGCTCTTTCTCTGACCAAACTAAAGAGAGTCTAGAACTTGCAGAAGCTAAAATACAGCAACTGGAGGAAGAGGTTCATAGAACTAGAAATGATCTTTCTTCTAAGATATCTTCAATTGATTTACTGAATGAGGAACTTCAAGCACTGAACTCTGCAAAGAATGAAGCTGAGGAAAAGCTAAGTGAGTTAACAAAAGATTATACAGACCTGAAGGCTTCTTCTGAAGCAAGAGAGAGCCGCAACTCTGAGCTACTATTAGAAAAAGATAATATGATCAAACAGCTTGATGGAAAACTCTCTGATGCATTAAGTGATTCTAGCAAAGACCGTGAGAACATCGCTGCGCTGAACAAGGAATTGGATGCAACAAAAGCAATGCTAGAGAATGAAGTTGCTGCAGTTAAAAGTTTAAGAGAATCACTTCAATCCACAGAGGAGGCACTGACAGATTCCAGAAGTGAGGTATCCAAACTTTCAGTGGAACTTGATGAAGCAAATAGAATGAACCAGGACCTGGTGCTGCAAATTTCTAAACTCCAGGATGAGTTCAATGAAATGCAAGAGGGCCT]
[+] EMBL CF326685             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AATCATCCCTGCCCGTCACGCAAGAACAAACTCCTGGGAATCCACTTTCTGGTCTTTTGAATGCAATTGCAGTTGCTGCCTCCGGTGTTCTTGCTGGACTGTATGGCACTTCTCAACAGGAAAAGAAGGCCCTGTATTCCGTCGTCTCATCTATGGAGAGCAAACTGGCTGAAAATGAGGCAGCAATCTCATTGATGAGGGAAAACTACGAGAAAAGATTGCTGGATCAACAAACAGCACAAAAGAAGCAAGCAATGAAGTTTCAGGAGCAGGAAGCCTCTCTTTTAGATCAGTTGTCTTCAACAAAAAAGACGGTAACTTCGCTAAGTGAAGAATTCAGAAGGGAGAAGACACTGGCTGAGGAGCTTAGGGAAGAAATACGTCGACTAGAGAGCAGTCTTGCACAAGCTGGGGATGACAAAGATGTTCTTGAAGCCAAACTGAAGGAAAAGTTGGGTGATGTCAACATTTTGCAGGAAAAAGTAAGTTTGCTTAGCCAAGAAATTGATAATAAGGGTATACGCATCAGGGAACTCAGTTCATTACTTTCGTCAAAGGAAGCAGACTACCGTAATCTGTGCTCTTTCTCTGACCAAACTAAAGAGAGTCTAGAACTTGCAGAAGCTAAAATACAGCAACTGGAGGAAGAGGTTCATAGAACTAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BE530942             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAAAAGATAATATGATCAAACAGCTTGATGGAAAACTCTCTGATGCATTAAGTGATTCTAGCAAAGACCGTGAGATCATCGCTGCGCTGAACAAGGAATTGGATGCAACAAAAGCAATGCTAGAGAATGAAGTTGCTGCAGTTAAAAGTTTAAGAGAATCACTTCAATCCACAGAGGAGGCACTGACAGATTCCAGAAGTGAGGTATCCAAACTTTCAGTGGAACTTGATGAAGCAAATAGAATGAACCAGGACCTGGTGCTGCAAATTTCTAAACTCCAGGATGAGTTCAATGAAATGCAAGAGGGCCT]




>consensus_7583#0
GCCGTCTCCGCCTCCGCCTTCGCCATCGCCTAATCCTCACCTCACCTCCGCCATTTTCAC
TGCGGGCTTCCGCTTCCGAGCTCGAAGGCGAGCGCCACCGCGAGGAGGGGGGGCTAGGGT
TTTGGGGTTGTCGCGTCGTGGGGGACGGGATGGGGTACCTCCTCCTCGCGCCGTCGCCGG
CGCCGCGGCCGCTCGCGTTCCGGTGCCGCCGAGGAGGCCGCGCGCGGAGAGGCGCGGCCA
TCGTCGCGTCGAGCTCGGCGTCGTCGTCGTCGTCGTCCGGTGATGCCGGCCCATCCCACT
CGGCGGCGGCGGCGGGGGCGTACGTGCTGGCGCGGCGGGGCGTGCTCCTCGGCGTCTCGG
CGCTCCCGCTCCTCCGCGCCAGGGAAGCCGCGGCGGCGGCCGCGGTGGCCACGCCTAACA
GCGGGGATCTCGCAACGGAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGGG
AAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTCA
CGCAAGAACAAACTCCTGGGAATCCACTTTCTGGTCTTTTGAATGCAATTGCAGTTGCTG
CCTCCGGTGTTCTTGCTGGACTGTATGGCACTTCTCAACAGGAAAAGAAGGCCCTGGAAT
CCGTCGTCTCATCTATGGAGAGCAAACTGGCTGAAAATGAGGCAGCAATCTCATTGATGA
GGGAAAACTACGAGAAAAGATTGCTGGATCAACAAACAGCACAAAAGAAGCAAGCAATGA
AGTTTCAGGAGCAGGAAGCCTCTCTTTTAGATCAGTTGTCTTCAACAAAAAAGACGGTAA
CTTCGCTAAGTGAAGAATTCAGAAGGGAGAAGACACTGGCTGAGGAGCTTAGGGAAGAAA
TACGTCGACTAGAGAGCAGTCTTGCACAAGCTGGGGATGACAAAGATGTTCTTGAAGCCA
AACTGAAGGAAAAGTTGGGTGATGTCAACATTTTGCAGGAAAAAGTAAGTTTGCTTAGCC
AAGAAATTGATAATAAGGGTATACGCATCAGGGAACTCAGTTCATTACTTTCGTCAAAGG
AAGCAGACTACCGTAATCTGTGCTCTTTCTCTGACCAAACTAAAGAGAGTCTAGAACTTG
CAGAAGCTAAAATACAGCAACTGGAGGAAGAGGTTCATAGAACTAGAAATGATCTTTCTT
CTAAGATATCTTCAATTGATTTACTGAATGAGGAACTTCAAGCACTGAACTCTGCAAAGA
ATGAAGCTGAGGAAAAGCTAAGTGAGTTAACAAAAGATTATACAGACCTGAAGGCTTCTT
CTGAAGCAAGAGAGAGCCGCAACTCTGAGCTACTATTAGAAAAAGATAATATGATCAAAC
AGCTTGATGGAAAACTCTCTGATGCATTAAGTGATTCTAGCAAAGACCGTGAGAACATCG
CTGCGCTGAACAAGGAATTGGATGCAACAAAAGCAATGCTAGAGAATGAAGTTGCTGCAG
TTAAAAGTTTAAGAGAATCACTTCAATCCACAGAGGAGGCACTGACAGATTCCAGAAGTG
AGGTATCCAAACTTTCAGTGGAACTTGATGAAGCAAATAGAATGAACCAGGACCTGGTGC
TGCAAATTTCTAAACTCCAGGATGAGTTCAATGAAATGCAAGAGGGCCT

consensusID : consensus_7583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [TTCAAAAGCCTGATGAACCTCAGCCTGGTTGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTCACGCAAGCACCCAACACTCCCTGGTGCAATCCCACTTTCTTGGTCTTTTTGAATGCCATTGCCAGTTGCTGCCTCCGTGATGTTCTTGCTTGGCACTGTCATGGCACTTCTCAACAAGAACAAGCAAGGCCCTGGGAATCCGTCGTCTCCATCTATGGAGAGCAAACTGGG]

[-] EMBL BI811480             [TTCAAAAGCCTGATGAACCTCAGCCTGGTTGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTCACGCAAGCACCCAACACTCCCTGGTGCAATCCCACTTTCTTGGTCTTTTTGAATGCCATTGCCAGTTGCTGCCTCCGTGATGTTCTTGCTTGGCACTGTCATGGCACTTCTCAACAAGAACAAGCAAGGCCCTGGGAATCCGTCGTCTCCATCTATGGAGAGCAAACTGGG]




>consensus_7583#1
TTCAAAAGCCTGATGAACCTCAGCCTGGTTGAAACTCAGGCTGAATCTCCTCTACCTGAA
GCTTTGCAACCAGAATCATCCCTGCCCGTCACGCAAGCACCCAACACTCCCTGGTGCAAT
CCCACTTTCTTGGTCTTTTTGAATGCCATTGCCAGTTGCTGCCTCCGTGATGTTCTTGCT
TGGCACTGTCATGGCACTTCTCAACAAGAACAAGCAAGGCCCTGGGAATCCGTCGTCTCC
ATCTATGGAGAGCAAACTGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7583#0      GCCGTCTCCGCCTCCGCCTTCGCCATCGCCTAATCCTCACCTCACCTCCGCCATTTTCAC 60
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      TGCGGGCTTCCGCTTCCGAGCTCGAAGGCGAGCGCCACCGCGAGGAGGGGGGGCTAGGGT 120
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      TTTGGGGTTGTCGCGTCGTGGGGGACGGGATGGGGTACCTCCTCCTCGCGCCGTCGCCGG 180
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      CGCCGCGGCCGCTCGCGTTCCGGTGCCGCCGAGGAGGCCGCGCGCGGAGAGGCGCGGCCA 240
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      TCGTCGCGTCGAGCTCGGCGTCGTCGTCGTCGTCGTCCGGTGATGCCGGCCCATCCCACT 300
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      CGGCGGCGGCGGCGGGGGCGTACGTGCTGGCGCGGCGGGGCGTGCTCCTCGGCGTCTCGG 360
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      CGCTCCCGCTCCTCCGCGCCAGGGAAGCCGCGGCGGCGGCCGCGGTGGCCACGCCTAACA 420
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      GCGGGGATCTCGCAACGGAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGG- 479
consensus_7583#1      ------------------------------TTCAAAAGCCTGATGAACCTCAGCCTGGTT 30
                                                    ****************************  

consensus_7583#0      GAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTC 539
consensus_7583#1      GAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTC 90
                      ************************************************************

consensus_7583#0      ACGCAAGAAC---AAACTCCTGGG----AATCCACTTTCT-GGTCTTTT-GAATGCAATT 590
consensus_7583#1      ACGCAAGCACCCAACACTCCCTGGTGCAATCCCACTTTCTTGGTCTTTTTGAATGCCATT 150
                      ******* **   * *****  **    *  ********* ******** ****** ***

consensus_7583#0      GC-AGTTGCTGCCTCCG--GTGTTCTTGCTGG--ACTGT-ATGGCACTTCTCAACAGGAA 644
consensus_7583#1      GCCAGTTGCTGCCTCCGTGATGTTCTTGCTTGGCACTGTCATGGCACTTCTCAACAAGAA 210
                      ** **************   ********** *  ***** **************** ***

consensus_7583#0      AAG--AAGGCCCTGG-AATCCGTCGTCTC-ATCTATGGAGAGCAAACTGGCTGAAAATGA 700
consensus_7583#1      CAAGCAAGGCCCTGGGAATCCGTCGTCTCCATCTATGGAGAGCAAACTGGG--------- 261
                       *   ********** ************* ********************          

consensus_7583#0      GGCAGCAATCTCATTGATGAGGGAAAACTACGAGAAAAGATTGCTGGATCAACAAACAGC 760
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      ACAAAAGAAGCAAGCAATGAAGTTTCAGGAGCAGGAAGCCTCTCTTTTAGATCAGTTGTC 820
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      TTCAACAAAAAAGACGGTAACTTCGCTAAGTGAAGAATTCAGAAGGGAGAAGACACTGGC 880
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      TGAGGAGCTTAGGGAAGAAATACGTCGACTAGAGAGCAGTCTTGCACAAGCTGGGGATGA 940
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      CAAAGATGTTCTTGAAGCCAAACTGAAGGAAAAGTTGGGTGATGTCAACATTTTGCAGGA 1000
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      AAAAGTAAGTTTGCTTAGCCAAGAAATTGATAATAAGGGTATACGCATCAGGGAACTCAG 1060
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      TTCATTACTTTCGTCAAAGGAAGCAGACTACCGTAATCTGTGCTCTTTCTCTGACCAAAC 1120
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      TAAAGAGAGTCTAGAACTTGCAGAAGCTAAAATACAGCAACTGGAGGAAGAGGTTCATAG 1180
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      AACTAGAAATGATCTTTCTTCTAAGATATCTTCAATTGATTTACTGAATGAGGAACTTCA 1240
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      AGCACTGAACTCTGCAAAGAATGAAGCTGAGGAAAAGCTAAGTGAGTTAACAAAAGATTA 1300
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      TACAGACCTGAAGGCTTCTTCTGAAGCAAGAGAGAGCCGCAACTCTGAGCTACTATTAGA 1360
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      AAAAGATAATATGATCAAACAGCTTGATGGAAAACTCTCTGATGCATTAAGTGATTCTAG 1420
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      CAAAGACCGTGAGAACATCGCTGCGCTGAACAAGGAATTGGATGCAACAAAAGCAATGCT 1480
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      AGAGAATGAAGTTGCTGCAGTTAAAAGTTTAAGAGAATCACTTCAATCCACAGAGGAGGC 1540
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      ACTGACAGATTCCAGAAGTGAGGTATCCAAACTTTCAGTGGAACTTGATGAAGCAAATAG 1600
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      AATGAACCAGGACCTGGTGCTGCAAATTTCTAAACTCCAGGATGAGTTCAATGAAATGCA 1660
consensus_7583#1      ------------------------------------------------------------
                                                                                  

consensus_7583#0      AGAGGGCCT 1669
consensus_7583#1      ---------