These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1767 fasta sequence [AGAGTAAAGAAGATGAAATAATTGAAGGAGAACCAGATCCAGAAATGGAAGTAGTTGCTGGACCTGGAGGAGAACCAAAAGTTGGAATGGTTTTCCTGAATGAAGACAAGGCCTATGACTGCTATGTCACCTATGCTGGAACTGTGGGGTTCAGCGTCCGAAAAGGATGGTTGGAAAAAACAGCAACAAATACTACAAAATCTCGGGCATATGTCTGTTCTAAAGAGGGATTCCGCTCTAAAAGTGTCAGTACTGATCCCAAGAAGCCACGGCCAGAAACAAGAACTGGTTGTCTGGCACACATGACTATTAAAATCACTGTGAGTGGCAAATATGTAGTGACTGAGTATGTGGCTGATCATAATCATGATCTTGAAACTCCTTTGGTGGACATCCAGGTTCTGAGATCACATAAGTTATTAGCAAAGTTACAGCAGCCTCCAGATCCACCAAGAGTTGTTTTGATACCAAATGATTATAAAAATTATGTAAGGACAAGGCACACAAAAGATATGCAATTAGGTGATACCCAGGCAATTTATGAATATTTGCAGAGGAAGAAAGGTGAACATCCTTCTTTCTTTTATGCCATCCAAGTGGATGAAGATGACCAGTTGACAAATGTATTCTGGGCAGATGTTAAGTCGATTCTGGATTACCACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGCCTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCATTGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGTGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGATGGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTGATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCTTCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACTACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTAATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTTGCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAAACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCTGTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAAGAAATATTAAAGAACTTCCACCACACTACATTTTGAAAAGATGGAGAAAGGATGCTCAGAGTGAATCTCCGAGGGAGAACTATGGTTTTGAAGCTGTAGATGAAGATCCCAGGTTCTTGTTGTCTAAACGATACAGCATGTTGTATC] [+] EMBL AK120460 [AGAGTAAAGAAGATGAAATAATTGAAGGAGAACCAGATCCAGAAATGGAAGTAGTTGCTGGACCTGGAGGAGAACCAAAAGTTGGAATGGTTTTCCTGAATGAAGACAAGGCCTATGACTGCTATGTCACCTATGCTGGAACTGTGGGGTTCAGCGTCCGAAAAGGATGGTTGGAAAAAACAGCAACAAATACTACAAAATCTCGGGCATATGTCTGTTCTAAAGAGGGATTCCGCTCTAAAAGTGTCAGTACTGATCCCAAGAAGCCACGGCCAGAAACAAGAACTGGTTGTCTGGCACACATGACTATTAAAATCACTGTGAGTGGCAAATATGTAGTGACTGAGTATGTGGCTGATCATAATCATGATCTTGAAACTCCTTTGGTGGACATCCAGGTTCTGAGATCACATAAGTTATTAGCAAAGTTACAGCAGCCTCCAGATCCACCAAGAGTTGTTTTGATACCAAATGATTATAAAAATTATGTAAGGACAAGGCACACAAAAGATATGCAATTAGGTGATACCCAGGCAATTTATGAATATTTGCAGAGGAAGAAAGGTGAACATCCTTCTTTCTTTTATGCCATCCAAGTGGATGAAGATGACCAGTTGACAAATGTATTCTGGGCAGATGTTAAGTCGATTCTGGATTACCACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGCCTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCATTGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGTGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGATGGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTGATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCTTCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACTACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTAATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTTGCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAAACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCTGTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAAGAAATATTAAAGAACTTCCACCACACTACATTTTGAAAAGATGGAGAAAGGATGCTCAGAGTGAATCTCCGAGGGAGAACTATGGTTTTGAAGCTGTAGATGAAGATCCCAGGTTCTTGTTGTCTAAACGATACAGCATGTTGTATC] [+] EMBL CB661443 [ ATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGTGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGATGGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTGATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCTTCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACTACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTAATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTTGCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAAACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCTGTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAAGAAATATTAAAGAACTTC ] [+] EMBL CB641486 [ GCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGATGGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTGATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCTTCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACTACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTAATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTTGCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAAACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCTGTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAAGAAATATTAAAGAACTTCCACCACACTACATTTTGAAAAGATGGAGAAAGGATGCTCAGAGTGAATCTCCGAGGGAGAACTATGGTTTTGAAGCTGTAGATGAAGATCCCAGGT ] consensusID : consensus_7586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [AGTCGATTCTGGATTACCACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGCCTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCATTGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGNGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTNNNNGACAATGAGTGGCTNNNTAAATTGTATGCAGATANNGNANNNTGGGCTTTACCTTATGGACGTGANNCATTCTGTGCANNTATTGNNNNNNCACTCNNNNNNGATANTNNC] [+] EMBL CF196482 [AGTCGATTCTGGATTACCACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGCCTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCATTGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGNGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTNNNNGACAATGAGTGGCTNNNTAAATTGTATGCAGATANNGNANNNTGGGCTTTACCTTATGGACGTGANNCATTCTGTGCANNTATTGNNNNNNCACTCNNNNNNGATANTNNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7586#0 AGAGTAAAGAAGATGAAATAATTGAAGGAGAACCAGATCCAGAAATGGAAGTAGTTGCTG 60 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 GACCTGGAGGAGAACCAAAAGTTGGAATGGTTTTCCTGAATGAAGACAAGGCCTATGACT 120 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 GCTATGTCACCTATGCTGGAACTGTGGGGTTCAGCGTCCGAAAAGGATGGTTGGAAAAAA 180 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 CAGCAACAAATACTACAAAATCTCGGGCATATGTCTGTTCTAAAGAGGGATTCCGCTCTA 240 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 AAAGTGTCAGTACTGATCCCAAGAAGCCACGGCCAGAAACAAGAACTGGTTGTCTGGCAC 300 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 ACATGACTATTAAAATCACTGTGAGTGGCAAATATGTAGTGACTGAGTATGTGGCTGATC 360 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 ATAATCATGATCTTGAAACTCCTTTGGTGGACATCCAGGTTCTGAGATCACATAAGTTAT 420 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 TAGCAAAGTTACAGCAGCCTCCAGATCCACCAAGAGTTGTTTTGATACCAAATGATTATA 480 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 AAAATTATGTAAGGACAAGGCACACAAAAGATATGCAATTAGGTGATACCCAGGCAATTT 540 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 ATGAATATTTGCAGAGGAAGAAAGGTGAACATCCTTCTTTCTTTTATGCCATCCAAGTGG 600 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 ATGAAGATGACCAGTTGACAAATGTATTCTGGGCAGATGTTAAGTCGATTCTGGATTACC 660 consensus_7586#1 ------------------------------------------AGTCGATTCTGGATTACC 18 ****************** consensus_7586#0 ACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGC 720 consensus_7586#1 ACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGC 78 ************************************************************ consensus_7586#0 CTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCAT 780 consensus_7586#1 CTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCAT 138 ************************************************************ consensus_7586#0 TGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAA 840 consensus_7586#1 TGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAA 198 ************************************************************ consensus_7586#0 TGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGTGAAGCAG 900 consensus_7586#1 TGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGNGAAGCAG 258 **************************************************** ******* consensus_7586#0 TTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATG 960 consensus_7586#1 TTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATG 318 ************************************************************ consensus_7586#0 CCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCA 1020 consensus_7586#1 CCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCA 378 ************************************************************ consensus_7586#0 TGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAG 1080 consensus_7586#1 TGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAG 438 ************************************************************ consensus_7586#0 ATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGAT 1140 consensus_7586#1 ATAAGTACAATCTNNNNGACAATGAGTGGCTNNNTAAATTGTATGCAGATANNGNANNNT 498 ************* ************** ***************** * * * consensus_7586#0 GGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTG 1200 consensus_7586#1 GGGCTTTACCTTATGGACGTGANNCATTCTGTGCANNTATTGNNNNNNCACTCNNNNNNG 558 ********************** *********** ***** ***** * consensus_7586#0 ATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCT 1260 consensus_7586#1 ATANTNNC---------------------------------------------------- 566 *** * * consensus_7586#0 TCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACT 1320 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 ACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTA 1380 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 ATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTT 1440 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 GCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAA 1500 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 ACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCT 1560 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 GTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAA 1620 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 GAAATATTAAAGAACTTCCACCACACTACATTTTGAAAAGATGGAGAAAGGATGCTCAGA 1680 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 GTGAATCTCCGAGGGAGAACTATGGTTTTGAAGCTGTAGATGAAGATCCCAGGTTCTTGT 1740 consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 TGTCTAAACGATACAGCATGTTGTATC 1767 consensus_7586#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||