These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1462 fasta sequence [CCGTCCACTCGCCGACTCGCCTCTCCTCCTCGCTCGCCGTCGCCGTCGCGGGAGACTCCGGCGAGCGCGTTGACGTGGCCATGTCGGGGACGGGGTGCTTCCCGGCGGGGGAGATGGCGGCGGTGGCGAGGGTGTGCCGGGACGGGGCGGCGGCGGCGAGGCTCAAGACGGGCTCCCTGCTCGCCATCCTCGTGGCGAGCGCCGTCGGCATCTGCCTCCCCGTGGCGCTCACGGGGGCGTTCCGCGGGAAGGCCGGGTACGCGCGCGGCCTCCTCCTCGTCAAGTGCTACGCCGCCGGGGTCATCCTCTCCACCTCGCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACTGCGCCGTCGCCACGCGCCGCCCGTGGCGGGACTTCCCCTTCGCGGGCCTCTTCTCCCTCGTCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACGGCCACCACCAGCACGCGGAGGAGGGGGAGTCGCCGCCGCCGCCGCCGCCGACCCACCAACCCTACGCCCCAATCCCCACCACCAAGAAGTCCCCCGTCTTCGAGCTCTCCGGCGAGATGAGCCCCAAGAAGCGCGCGCACTCAGACGACACGGACCGGGACGACGTGGCGCTCTTCGGGGCCAAGAGCGCGGTCCGGAGCGACGAGGTCGTCGTCGCCCCCCGTGTCGGCTGCCATGGGCACCACGACGTGGTGGAGGTTGGGGAGGAAGGAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGATTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTCTTGAATGCCTTTTGATACTGTGAGCCATTTTCGTCTCCTGATTACCATGGACAATCAAAACGTACAGTGA] [+] EMBL AK120502 [CCGTCCACTCGCCGACTCGCCTCTCCTCCTCGCTCGCCGTCGCCGTCGCGGGAGACTCCGGCGAGCGCGTTGACGTGGCCATGTCGGGGACGGGGTGCTTCCCGGCGGGGGAGATGGCGGCGGTGGCGAGGGTGTGCCGGGACGGGGCGGCGGCGGCGAGGCTCAAGACGGGCTCCCTGCTCGCCATCCTCGTGGCGAGCGCCGTCGGCATCTGCCTCCCCGTGGCGCTCACGGGGGCGTTCCGCGGGAAGGCCGGGTACGCGCGCGGCCTCCTCCTCGTCAAGTGCTACGCCGCCGGGGTCATCCTCTCCACCTCGCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACTGCGCCGTCGCCACGCGCCGCCCGTGGCGGGACTTCCCCTTCGCGGGCCTCTTCTCCCTCGTCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACGGCCACCACCAGCACGCGGAGGAGGGGGAGTCGCCGCCGCCGCCGCCGCCGACCCACCAACCCTACGCCCCAATCCCCACCACCAAGAAGTCCCCCGTCTTCGAGCTCTCCGGCGAGATGAGCCCCAAGAAGCGCGCGCACTCAGACGACACGGACCGGGACGACGTGGCGCTCTTCGGGGCCAAGAGCGCGGTCCGGAGCGACGAGGTCGTCGTCGCCCCCCGTGTCGGCTGCCATGGGCACCACGACGTGGTGGAGGTTGGGGAGGAAGGAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGATTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTC ] [+] EMBL AK103730 [ GCCGTCGCCGTCGCAGGAGACTCCGGCGAGCGCGTTGACGTGGCCATGTCGGGGACGGGGTGCTTCCCGGCGGGGGAGATGGCGGCGGTGGCGAGGGTGTGCCGGGACGGGGCGGCGGCGGCGAGGCTCAAGACGGGCTCCCTGCTCGCCATCCTCGTGGCGAGCGCCGTCGGCATCTGCCTCCCCGTGGCGCTCACGGGGGCGTTCCGCGGGAAGGCCGGGTACGCGCGCGGCCTCCTCCTCGTCAAGTGCTACGCCGCCGGGGTCATCCTCTCCACCTCGCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACTGCGCCGTCGCCACGCGCCGCCCGTGGCGGGACTTCCCCTTCGCGGGCCTCTTCTCCCTCGTCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACGGCCACCACCAGCACGCGGAGGAGGGGGAGTCGCCGCCGCCGCCGCCGCCGACCCACCAACCCTACGCCCCAATCCCCACCACCAAGAAGTCCCCCGTCTTCGAGCTCTCCGGCGAGATGAGCCCCAAGAAGCGCGCGCACTCAGACGACACGGACCGGGACGACGTGGCGCTCTTCGGGGCCAAGAGCGCGGTCCGGAGCGACGAGGTCGTCGTCGCCCCCCGTGTCGGCTGCCATGGGCACCACGACGTGGTGGAGGTTGGGGAGGAAGGAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGATTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTCTTGAATGCCTTTTGATACTGTGAGCCATTTTCGTCTCCTGATTACCATGGACAATCAAAACGTACAGTGA] [+] EMBL CB634835 [ TCCACCTCCCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACTGCGCCGTCGCCACGCGCCGCCCGTGGCGGCACTTCCCCTTCGCGGGCCTCTTCTCCCTCGTCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACGGCCACCACCAGCACGCGGAGGAGGGGGAGTCTTCTTCGCCGCCGACGCCGACACACCTAACATACGCCCCAGTCCCGACCA ] consensusID : consensus_7589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGACTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTCTTGAATGCCAAAAAAAAAAAAGA] [-] EMBL CB634836 [GAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGACTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTCTTGAATGCCAAAAAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7589#0 CCGTCCACTCGCCGACTCGCCTCTCCTCCTCGCTCGCCGTCGCCGTCGCGGGAGACTCCG 60 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 GCGAGCGCGTTGACGTGGCCATGTCGGGGACGGGGTGCTTCCCGGCGGGGGAGATGGCGG 120 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 CGGTGGCGAGGGTGTGCCGGGACGGGGCGGCGGCGGCGAGGCTCAAGACGGGCTCCCTGC 180 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 TCGCCATCCTCGTGGCGAGCGCCGTCGGCATCTGCCTCCCCGTGGCGCTCACGGGGGCGT 240 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 TCCGCGGGAAGGCCGGGTACGCGCGCGGCCTCCTCCTCGTCAAGTGCTACGCCGCCGGGG 300 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 TCATCCTCTCCACCTCGCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACT 360 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 GCGCCGTCGCCACGCGCCGCCCGTGGCGGGACTTCCCCTTCGCGGGCCTCTTCTCCCTCG 420 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 TCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACG 480 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 GCCACCACCAGCACGCGGAGGAGGGGGAGTCGCCGCCGCCGCCGCCGCCGACCCACCAAC 540 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 CCTACGCCCCAATCCCCACCACCAAGAAGTCCCCCGTCTTCGAGCTCTCCGGCGAGATGA 600 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 GCCCCAAGAAGCGCGCGCACTCAGACGACACGGACCGGGACGACGTGGCGCTCTTCGGGG 660 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 CCAAGAGCGCGGTCCGGAGCGACGAGGTCGTCGTCGCCCCCCGTGTCGGCTGCCATGGGC 720 consensus_7589#1 ------------------------------------------------------------ consensus_7589#0 ACCACGACGTGGTGGAGGTTGGGGAGGAAGGAGGAGGAGGGGAGGAGGAGGAGGCGAGGA 780 consensus_7589#1 ------------------------------GAGGAGGAGGGGAGGAGGAGGAGGCGAGGA 30 ****************************** consensus_7589#0 GGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGATTGGGATCGTGTTCCACTCGGTCATCA 840 consensus_7589#1 GGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGACTGGGATCGTGTTCCACTCGGTCATCA 90 ********************************* ************************** consensus_7589#0 TCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGC 900 consensus_7589#1 TCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGC 150 ************************************************************ consensus_7589#0 TCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTT 960 consensus_7589#1 TCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTT 210 ************************************************************ consensus_7589#0 TTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAA 1020 consensus_7589#1 TTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAA 270 ************************************************************ consensus_7589#0 TACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCC 1080 consensus_7589#1 TACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCC 330 ************************************************************ consensus_7589#0 TAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTG 1140 consensus_7589#1 TAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTG 390 ************************************************************ consensus_7589#0 TCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGA 1200 consensus_7589#1 TCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGA 450 ************************************************************ consensus_7589#0 AAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCT 1260 consensus_7589#1 AAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCT 510 ************************************************************ consensus_7589#0 GGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGA 1320 consensus_7589#1 GGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGA 570 ************************************************************ consensus_7589#0 AATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAA 1380 consensus_7589#1 AATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAA 630 ************************************************************ consensus_7589#0 ACTTAAAAATTCTTGAATGCCTTTTGATACTGTGAGCCATTTTCGTCTCCTGATTACCAT 1440 consensus_7589#1 ACTTAAAAATTCTTGAATGCCAAAAAAAAAAAAGA------------------------- 665 ********************* * * ** consensus_7589#0 GGACAATCAAAACGTACAGTGA 1462 consensus_7589#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||