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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1462 fasta sequence
[CCGTCCACTCGCCGACTCGCCTCTCCTCCTCGCTCGCCGTCGCCGTCGCGGGAGACTCCGGCGAGCGCGTTGACGTGGCCATGTCGGGGACGGGGTGCTTCCCGGCGGGGGAGATGGCGGCGGTGGCGAGGGTGTGCCGGGACGGGGCGGCGGCGGCGAGGCTCAAGACGGGCTCCCTGCTCGCCATCCTCGTGGCGAGCGCCGTCGGCATCTGCCTCCCCGTGGCGCTCACGGGGGCGTTCCGCGGGAAGGCCGGGTACGCGCGCGGCCTCCTCCTCGTCAAGTGCTACGCCGCCGGGGTCATCCTCTCCACCTCGCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACTGCGCCGTCGCCACGCGCCGCCCGTGGCGGGACTTCCCCTTCGCGGGCCTCTTCTCCCTCGTCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACGGCCACCACCAGCACGCGGAGGAGGGGGAGTCGCCGCCGCCGCCGCCGCCGACCCACCAACCCTACGCCCCAATCCCCACCACCAAGAAGTCCCCCGTCTTCGAGCTCTCCGGCGAGATGAGCCCCAAGAAGCGCGCGCACTCAGACGACACGGACCGGGACGACGTGGCGCTCTTCGGGGCCAAGAGCGCGGTCCGGAGCGACGAGGTCGTCGTCGCCCCCCGTGTCGGCTGCCATGGGCACCACGACGTGGTGGAGGTTGGGGAGGAAGGAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGATTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTCTTGAATGCCTTTTGATACTGTGAGCCATTTTCGTCTCCTGATTACCATGGACAATCAAAACGTACAGTGA]
[+] EMBL AK120502 [CCGTCCACTCGCCGACTCGCCTCTCCTCCTCGCTCGCCGTCGCCGTCGCGGGAGACTCCGGCGAGCGCGTTGACGTGGCCATGTCGGGGACGGGGTGCTTCCCGGCGGGGGAGATGGCGGCGGTGGCGAGGGTGTGCCGGGACGGGGCGGCGGCGGCGAGGCTCAAGACGGGCTCCCTGCTCGCCATCCTCGTGGCGAGCGCCGTCGGCATCTGCCTCCCCGTGGCGCTCACGGGGGCGTTCCGCGGGAAGGCCGGGTACGCGCGCGGCCTCCTCCTCGTCAAGTGCTACGCCGCCGGGGTCATCCTCTCCACCTCGCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACTGCGCCGTCGCCACGCGCCGCCCGTGGCGGGACTTCCCCTTCGCGGGCCTCTTCTCCCTCGTCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACGGCCACCACCAGCACGCGGAGGAGGGGGAGTCGCCGCCGCCGCCGCCGCCGACCCACCAACCCTACGCCCCAATCCCCACCACCAAGAAGTCCCCCGTCTTCGAGCTCTCCGGCGAGATGAGCCCCAAGAAGCGCGCGCACTCAGACGACACGGACCGGGACGACGTGGCGCTCTTCGGGGCCAAGAGCGCGGTCCGGAGCGACGAGGTCGTCGTCGCCCCCCGTGTCGGCTGCCATGGGCACCACGACGTGGTGGAGGTTGGGGAGGAAGGAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGATTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTC ]
[+] EMBL AK103730 [ GCCGTCGCCGTCGCAGGAGACTCCGGCGAGCGCGTTGACGTGGCCATGTCGGGGACGGGGTGCTTCCCGGCGGGGGAGATGGCGGCGGTGGCGAGGGTGTGCCGGGACGGGGCGGCGGCGGCGAGGCTCAAGACGGGCTCCCTGCTCGCCATCCTCGTGGCGAGCGCCGTCGGCATCTGCCTCCCCGTGGCGCTCACGGGGGCGTTCCGCGGGAAGGCCGGGTACGCGCGCGGCCTCCTCCTCGTCAAGTGCTACGCCGCCGGGGTCATCCTCTCCACCTCGCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACTGCGCCGTCGCCACGCGCCGCCCGTGGCGGGACTTCCCCTTCGCGGGCCTCTTCTCCCTCGTCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACGGCCACCACCAGCACGCGGAGGAGGGGGAGTCGCCGCCGCCGCCGCCGCCGACCCACCAACCCTACGCCCCAATCCCCACCACCAAGAAGTCCCCCGTCTTCGAGCTCTCCGGCGAGATGAGCCCCAAGAAGCGCGCGCACTCAGACGACACGGACCGGGACGACGTGGCGCTCTTCGGGGCCAAGAGCGCGGTCCGGAGCGACGAGGTCGTCGTCGCCCCCCGTGTCGGCTGCCATGGGCACCACGACGTGGTGGAGGTTGGGGAGGAAGGAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGATTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTCTTGAATGCCTTTTGATACTGTGAGCCATTTTCGTCTCCTGATTACCATGGACAATCAAAACGTACAGTGA]
[+] EMBL CB634835 [ TCCACCTCCCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACTGCGCCGTCGCCACGCGCCGCCCGTGGCGGCACTTCCCCTTCGCGGGCCTCTTCTCCCTCGTCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACGGCCACCACCAGCACGCGGAGGAGGGGGAGTCTTCTTCGCCGCCGACGCCGACACACCTAACATACGCCCCAGTCCCGACCA ]
consensusID : consensus_7589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[GAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGACTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTCTTGAATGCCAAAAAAAAAAAAGA]
[-] EMBL CB634836 [GAGGAGGAGGGGAGGAGGAGGAGGCGAGGAGGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGACTGGGATCGTGTTCCACTCGGTCATCATCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGCTCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTTTTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAATACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCCTAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTGTCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGAAAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCTGGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGAAATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAAACTTAAAAATTCTTGAATGCCAAAAAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7589#0 CCGTCCACTCGCCGACTCGCCTCTCCTCCTCGCTCGCCGTCGCCGTCGCGGGAGACTCCG 60
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 GCGAGCGCGTTGACGTGGCCATGTCGGGGACGGGGTGCTTCCCGGCGGGGGAGATGGCGG 120
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 CGGTGGCGAGGGTGTGCCGGGACGGGGCGGCGGCGGCGAGGCTCAAGACGGGCTCCCTGC 180
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 TCGCCATCCTCGTGGCGAGCGCCGTCGGCATCTGCCTCCCCGTGGCGCTCACGGGGGCGT 240
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 TCCGCGGGAAGGCCGGGTACGCGCGCGGCCTCCTCCTCGTCAAGTGCTACGCCGCCGGGG 300
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 TCATCCTCTCCACCTCGCTCGTCCACGTCCTCCCCGACGCGCACGCCGCGCTCGCCGACT 360
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 GCGCCGTCGCCACGCGCCGCCCGTGGCGGGACTTCCCCTTCGCGGGCCTCTTCTCCCTCG 420
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 TCGGCGCGCTCCTCGCCCTCCTCGTCGACCTCTCCGCCTCCTCCCACCTCGAAGCCCACG 480
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 GCCACCACCAGCACGCGGAGGAGGGGGAGTCGCCGCCGCCGCCGCCGCCGACCCACCAAC 540
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 CCTACGCCCCAATCCCCACCACCAAGAAGTCCCCCGTCTTCGAGCTCTCCGGCGAGATGA 600
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 GCCCCAAGAAGCGCGCGCACTCAGACGACACGGACCGGGACGACGTGGCGCTCTTCGGGG 660
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 CCAAGAGCGCGGTCCGGAGCGACGAGGTCGTCGTCGCCCCCCGTGTCGGCTGCCATGGGC 720
consensus_7589#1 ------------------------------------------------------------
consensus_7589#0 ACCACGACGTGGTGGAGGTTGGGGAGGAAGGAGGAGGAGGGGAGGAGGAGGAGGCGAGGA 780
consensus_7589#1 ------------------------------GAGGAGGAGGGGAGGAGGAGGAGGCGAGGA 30
******************************
consensus_7589#0 GGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGATTGGGATCGTGTTCCACTCGGTCATCA 840
consensus_7589#1 GGAAGCAGAAGATGGTGTCCAAGGTGCTCGAGACTGGGATCGTGTTCCACTCGGTCATCA 90
********************************* **************************
consensus_7589#0 TCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGC 900
consensus_7589#1 TCGGGGTCACCATGGGGATGTCTCAGGATGTCTGCGCCATCCGGCCGCTCGTCGTCGCGC 150
************************************************************
consensus_7589#0 TCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTT 960
consensus_7589#1 TCTCCTTCCACCAGGTGTTCGAAGGAATGGGCCTCGGCGGCTGCATTGCGCAGGCAGGTT 210
************************************************************
consensus_7589#0 TTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAA 1020
consensus_7589#1 TTGGGATTGCAACGGTGGGTTACATGTGCGTAATGTTCTCGGTGACAACACCATTGGGAA 270
************************************************************
consensus_7589#0 TACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCC 1080
consensus_7589#1 TACTTCTTGGAATGGCAATATTCCATATGACTGGCTATGATGATAGCAGTCCAAATGCCC 330
************************************************************
consensus_7589#0 TAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTG 1140
consensus_7589#1 TAATAATAGAAGGGCTCCTTGGCTCACTTTCTTCTGGAATCCTTGTCTACATGGCACTTG 390
************************************************************
consensus_7589#0 TCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGA 1200
consensus_7589#1 TCGATCTCATTTCTCTTGATTTCTTCCACAATAAAATGATGTCATCATCTAATAAATTGA 450
************************************************************
consensus_7589#0 AAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCT 1260
consensus_7589#1 AAAAGGTCTCTTATGTCGCATTAGTGCTTGGATCTGCATCCATGTCTATATTAGCTCTCT 510
************************************************************
consensus_7589#0 GGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGA 1320
consensus_7589#1 GGGCATAGGTCATAGGTGCAACCAGAGTGAAATACGGTGTATTGATCCTTTGTAGGAAGA 570
************************************************************
consensus_7589#0 AATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAA 1380
consensus_7589#1 AATGGATGTTTTGGGAGTCAGGACTTCCCTCATGTAAATTAAACTTCCACATAATGGGAA 630
************************************************************
consensus_7589#0 ACTTAAAAATTCTTGAATGCCTTTTGATACTGTGAGCCATTTTCGTCTCCTGATTACCAT 1440
consensus_7589#1 ACTTAAAAATTCTTGAATGCCAAAAAAAAAAAAGA------------------------- 665
********************* * * **
consensus_7589#0 GGACAATCAAAACGTACAGTGA 1462
consensus_7589#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||