cluster # 759

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Oryza sativa
cluster # 759 cluster # 759 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_759#0 length = 773 sequences # 1

consensus_759#1 length = 645 sequences # 1

consensusID : consensus_759#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 773
fasta sequence

                              [AAGGGGTGTAGTGAAGGATGAGATCGAGCAACTCAGAACCAATCTTGGTTCCACGCATGACGACCTCATCAAGCTCTCGGAGGTCCAGGACCCTCCCAACGCAGCGAGGTACTGGATGAAAGATGTGCGCGAACTGTCCTATGACATGGACGACTGGATCGACCACTTCATCCAGCTAAACGGCGATGTGAAAAACGATTGGATTGGAAAGATCTCAGGATTCAAGGCTCGTTGGGAGGAGGTGAAAGATCAGTACATCAGGTATAATCTTGTTGATTGCGTCCCTAGCTCTACTAACATTGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGGCATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCTGGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATGGCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGATATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGCTTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTACTTTATTATAATTGATGATTTATGGGCTATATCAGTATGGGATGTTCTTAGCCGTGGTTTTCCGGATAATAATAGTTGCAGCAGAATAATAATAACAACAACAGTTGAGGACATTG]

[+] EMBL CB635921             [AAGGGGTGTAGTGAAGGATGAGATCGAGCAACTCAGAACCAATCTTGGTTCCACGCATGACGACCTCATCAAGCTCTCGGAGGTCCAGGACCCTCCCAACGCAGCGAGGTACTGGATGAAAGATGTGCGCGAACTGTCCTATGACATGGACGACTGGATCGACCACTTCATCCAGCTAAACGGCGATGTGAAAAACGATTGGATTGGAAAGATCTCAGGATTCAAGGCTCGTTGGGAGGAGGTGAAAGATCAGTACATCAGGTATAATCTTGTTGATTGCGTCCCTAGCTCTACTAACATTGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGGCATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCTGGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATGGCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGATATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGCTTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTACTTTATTATAATTGATGATTTATGGGCTATATCAGTATGGGATGTTCTTAGCCGTGGTTTTCCGGATAATAATAGTTGCAGCAGAATAATAATAACAACAACAGTTGAGGACATTG]




>consensus_759#0
AAGGGGTGTAGTGAAGGATGAGATCGAGCAACTCAGAACCAATCTTGGTTCCACGCATGA
CGACCTCATCAAGCTCTCGGAGGTCCAGGACCCTCCCAACGCAGCGAGGTACTGGATGAA
AGATGTGCGCGAACTGTCCTATGACATGGACGACTGGATCGACCACTTCATCCAGCTAAA
CGGCGATGTGAAAAACGATTGGATTGGAAAGATCTCAGGATTCAAGGCTCGTTGGGAGGA
GGTGAAAGATCAGTACATCAGGTATAATCTTGTTGATTGCGTCCCTAGCTCTACTAACAT
TGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGG
CATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCT
GGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATG
GCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGA
TATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGC
TTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTACTT
TATTATAATTGATGATTTATGGGCTATATCAGTATGGGATGTTCTTAGCCGTGGTTTTCC
GGATAATAATAGTTGCAGCAGAATAATAATAACAACAACAGTTGAGGACATTG

consensusID : consensus_759#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [GTATAATCTTGTTGANTGCGTCCCTAGCTCTACTAACATTGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGGCATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCTGGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATGGCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGATATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGCTTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTTTTTTCTTGATCCACTTGTTGTCTCATACTTCCTCTATTCTAAAATATAGGGCACAACTATTTTTTAAAGGTGTTTCATAATATAAGACGTGCGTACATGCATGGTAATTAATTAGCATTTCTTCTCTCCTAAATTATTATTTTTTAAATCATACACTCACGAGATGTTTAATTCTATTGGGTGCATGTATTGTATTAGTTGGATTGATTCAAATAAAGATGTGATAGTAATTGTTTCTTAAAAAAAAAA]

[-] EMBL CA759316             [GTATAATCTTGTTGANTGCGTCCCTAGCTCTACTAACATTGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGGCATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCTGGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATGGCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGATATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGCTTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTTTTTTCTTGATCCACTTGTTGTCTCATACTTCCTCTATTCTAAAATATAGGGCACAACTATTTTTTAAAGGTGTTTCATAATATAAGACGTGCGTACATGCATGGTAATTAATTAGCATTTCTTCTCTCCTAAATTATTATTTTTTAAATCATACACTCACGAGATGTTTAATTCTATTGGGTGCATGTATTGTATTAGTTGGATTGATTCAAATAAAGATGTGATAGTAATTGTTTCTTAAAAAAAAAA]




>consensus_759#1
GTATAATCTTGTTGANTGCGTCCCTAGCTCTACTAACATTGCAATTGGCCATCCTTCTCC
TCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGGCATGGAAGGCCTAATGCATGA
AATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCTGGTGGTATCCATTGTTGGTGT
CCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATGGCATAAATTTGGAGGGCAGTT
CGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGATATGAGAGGGATTCTTAGAAA
CATGCTCACACAGGTCAATCCGAACCAACCGACCGATGCTTGCGAGGTGCACAGACTGGT
TCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTTTTTTCTTGATCCACTTGTTGTCTC
ATACTTCCTCTATTCTAAAATATAGGGCACAACTATTTTTTAAAGGTGTTTCATAATATA
AGACGTGCGTACATGCATGGTAATTAATTAGCATTTCTTCTCTCCTAAATTATTATTTTT
TAAATCATACACTCACGAGATGTTTAATTCTATTGGGTGCATGTATTGTATTAGTTGGAT
TGATTCAAATAAAGATGTGATAGTAATTGTTTCTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_759#0      AAGGGGTGTAGTGAAGGATGAGATCGAGCAACTCAGAACCAATCTTGGTTCCACGCATGA 60
consensus_759#1      ------------------------------------------------------------
                                                                                 

consensus_759#0      CGACCTCATCAAGCTCTCGGAGGTCCAGGACCCTCCCAACGCAGCGAGGTACTGGATGAA 120
consensus_759#1      ------------------------------------------------------------
                                                                                 

consensus_759#0      AGATGTGCGCGAACTGTCCTATGACATGGACGACTGGATCGACCACTTCATCCAGCTAAA 180
consensus_759#1      ------------------------------------------------------------
                                                                                 

consensus_759#0      CGGCGATGTGAAAAACGATTGGATTGGAAAGATCTCAGGATTCAAGGCTCGTTGGGAGGA 240
consensus_759#1      ------------------------------------------------------------
                                                                                 

consensus_759#0      GGTGAAAGATCAGTACATCAGGTATAATCTTGTTGATTGCGTCCCTAGCTCTACTAACAT 300
consensus_759#1      ---------------------GTATAATCTTGTTGANTGCGTCCCTAGCTCTACTAACAT 39
                                          *************** ***********************

consensus_759#0      TGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGG 360
consensus_759#1      TGCAATTGGCCATCCTTCTCCTCCTAGCATGGATCCCGTGGAAGAAAAAATCACTGTTGG 99
                     ************************************************************

consensus_759#0      CATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCT 420
consensus_759#1      CATGGAAGGCCTAATGCATGAAATTATTGAGAGGTTGGGCACCGACGAGCAAAGGCAGCT 159
                     ************************************************************

consensus_759#0      GGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATG 480
consensus_759#1      GGTGGTATCCATTGTTGGTGTCCAGGGCGTCGGTAAGACCACGCTTGCCCAAAAAATATG 219
                     ************************************************************

consensus_759#0      GCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGA 540
consensus_759#1      GCATAAATTTGGAGGGCAGTTCGAATACCGGGCTTTTGTGCAGACGGCTAAAAAACCTGA 279
                     ************************************************************

consensus_759#0      TATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGC 600
consensus_759#1      TATGAGAGGGATTCTTAGAAACATGCTCACACAGGTCAATCCGAACCAACCGACCGATGC 339
                     ************************************************************

consensus_759#0      TTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTACTT 660
consensus_759#1      TTGCGAGGTGCACAGACTGGTTCACGATCTCAGGGAGTATTTGCAAGACAAGAGGTTTTT 399
                     ********************************************************  **

consensus_759#0      TATTA---TAATTGATGATTTATGGG--CTATATC----AGTATGGGATGTTCTTAGCCG 711
consensus_759#1      TCTTGATCCACTTGTTGTCTCATACTTCCTCTATTCTAAAATATAGGGCACAACTATTTT 459
                     * **     * *** **  * **     ** ***     * *** **       **    

consensus_759#0      T----GGTTTTCCGGATAATAATAGTTGCA-----GCAGAATAATAA--TAACAACAACA 760
consensus_759#1      TTAAAGGTGTTTCATAATATAAGACGTGCGTACATGCATGGTAATTAATTAGCATTTCTT 519
                     *    *** ** *  *  **** *  ***      ***   **** *  ** **      

consensus_759#0      GTTGAGGACATTG----------------------------------------------- 773
consensus_759#1      CTCTCCTAAATTATTATTTTTTAAATCATACACTCACGAGATGTTTAATTCTATTGGGTG 579
                      *     * ***                                                

consensus_759#0      ------------------------------------------------------------
consensus_759#1      CATGTATTGTATTAGTTGGATTGATTCAAATAAAGATGTGATAGTAATTGTTTCTTAAAA 639
                                                                                 

consensus_759#0      ------
consensus_759#1      AAAAAA 645