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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1527 fasta sequence
[CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCTCCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGCCACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTGCGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGGCGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCTGCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCGGCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGTGGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGAGCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCATCCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACCCGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGACAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGA-GGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTG-TTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGTTGGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGCTTGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTGGTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCATACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAACTAGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTGGCCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAATGAGTATCTTTCCATCTGTCTTTCCAATC]
[+] EMBL AK120534 [CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCTCCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGCCACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTGCGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGGCGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCTGCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCGGCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGTGGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGAGCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCATCCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACCCGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGACAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGA GGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTG TTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGTTGGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGCTTGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTGGTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCATACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAACTAGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTGGCCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAATGAGTATCTTTCCATCTGTCTTTCCAATC]
[+] EMBL OSS1034A [ GATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGNCCATAGGTGAAGAGAGGAGGTAAAACAAGGNAATNTAATNATGGGTGAGATCCAGACANGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCT ]
consensusID : consensus_7591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 449 fasta sequence
[CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACA-AGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTG-CTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGTTTTTTTTGAGATTCTAAAAAAAAAAAAAAAAAACTCGAGACT]
[-] EMBL CA758287 [CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCACCAGGACCAGAGGTGAAGAGAGGAGTTAAAACA AGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTG CTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTGCCTCCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATTGGGGCTGTTTTTTTTGAGATTCTAAAAAAAAAAAAAAAAAACTCGAGACT]
[+] EMBL BM420663 [ GGAGTTAAAACACAGGAAATGTAATGAGGGTGAGATCCAGACAAGAAGACAGAGACNATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTGAGATTGCCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATCTACTTAAGGGAGATGTGGGTACTTTTGCAACCTG TTTTTTTTTCTCNTTACCTTTTTTGCCTCCTCTCTCTCTCTCNTCCTCTCTCT TAGTCCATGCACCTGTGTGATATTAAGTTTGTCAGTGATGTGTTACAA CAAGAAAAGAACAAGGAAAAGGTGGGNTGAGAACCCCNTTGGGCCTGTTTTTTTTGAAA AAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7591#0 CTCCTAACCTTCGATCCCCCCTCCTCTCCTTCTCCCTTAAAAACCTTCCCTCTTCCTCCT 60
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 CCTCCTCCCCCTCCTCCCCCCCCCCCCCCCACCCCCACCCCATCCCCGCCGCCGCCGCGC 120
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 CACTCCCATGGCCACGCAACGGCCTCTCGCCGTCCTCCTCCTCCTCCTCCTCGCCGCCTG 180
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 CGCGCTGCCGCTCGCTCGATCCCGCGCGGCGCCAAGAACGGCCGTGGGTGGCGGTGGTGG 240
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 CGCGGCGGCGGCCGACACGATACACGAGCTCCTGCGGACGCACGGGCTGCCGGGGGGGCT 300
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 GCTGCCGCGAGGGGTGGAGTCGTACAGCCTCGACGAGGCGAACGGGCTGCTGGAGGCGCG 360
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 GCTGTCGGCGCCGTGCTACGCCAAGTACGACGACGGCGACCTGGCCTTCTTCGACACCGT 420
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 GGTGCGGGGCAACCTCAGCTTCGGCGCGCTCCGCGGCGTGGAGGGCCTGTCCCAGGAGGA 480
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 GCTCTTCGTGTGGCTCCCCGTCAAGGGCATCGTCGTCGCCGACCCGGGCTCCGGCGTCAT 540
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 CCTCTTCGACATCGGCTACGCCCACAAGCGGCTCTCCAGGTCGCTCTTCGAGGAGCCACC 600
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 CGACTGCAAGCCCTCCGCCTCCGCCGGCACGGACGCCGCCGACGCCGCCAGGTGGAAGGA 660
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 CAGGCAAGATGTTCCTGGCCTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCA 720
consensus_7591#1 -------------------CTGAGGTTCATGGGAGAGGCATCATCAGGAGCAGAAAACCA 41
*****************************************
consensus_7591#0 CCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGAGGGTGAGATCCAG 780
consensus_7591#1 CCAGGACCAGAGGTGAAGAGAGGAGTTAAAACAAGGAAATGTAATGAGGGTGAGATCCAG 101
************************************************************
consensus_7591#0 ACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTG 840
consensus_7591#1 ACAAGAAGACAGAGACAATTGGCTGAGCCAGTTTTCCCCTTGTGTAAAAATCCTGTGGTG 161
************************************************************
consensus_7591#0 AGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATC 900
consensus_7591#1 AGATTGCTGCTGATGCTGCAAACAACAACTGCTACTGCCTGCAGAGGGTTTGGGTGTATC 221
************************************************************
consensus_7591#0 TACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTT-CTCTTTACCTTTTTTG 959
consensus_7591#1 TACTTAAGGGAGATGTGGGTACTTTTGCAACCTGTTTTTTTTTTCTCTTTACCTTTTTTG 281
******************************************* ****************
consensus_7591#0 CCTCCTCTCTCTCTCTCTCTTCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTT 1019
consensus_7591#1 CCTCCTCTCTCTCTCTCT--TCCTCTCTCTCTAGTCCATGCACCTGTGTGATATTAAGTT 339
****************** ****************************************
consensus_7591#0 TGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATT 1079
consensus_7591#1 TGTCAGTGATGTGTTACAAGCAAGAAAAGAACAAGGAAAAGGTGGGGTGAGAAGCCAATT 399
************************************************************
consensus_7591#0 GGGGCTGGTTTTTTTGAGATTCTTGAGAAGGGAATTTTCTTTGGTATGTACTGTATGTGT 1139
consensus_7591#1 GGGGCTGTTTTTTTTGAGATTCTAAAAAAAAAAAAAAAAAAC--TCGAGACT-------- 449
******* *************** * ** ** * ***
consensus_7591#0 TGGTGTATGTATGTGTGTGTGCCAGCTCAGCAGTGAGTGAGCTGGGTACAGCACACAGGC 1199
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 TTGCATTGCCTTCCCTGCACTGCATGTGAGCTTGTTTGTGTTTGGCTGGCTGGCTGGCTG 1259
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 GTGGTTGAATGCTTCTTCTCCTGCCTAAGATGATTAGATTAGTAGTACATATACAATCAT 1319
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 ACAATACCATATGCTACTCCCTTCAATACCATATGCTACTCCCTTCAATTATTCTTCAAC 1379
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 TAGGCTGGGTCACAGGCTCATAGTAGAGCTAGCACAGAATATAATAATAATCACTATTTG 1439
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 GCCTATATCTCCTTCCATTCCATGTAGGAGTATCTGTTTATGTGGTGTGCAAGTCTCAAT 1499
consensus_7591#1 ------------------------------------------------------------
consensus_7591#0 GAGTATCTTTCCATCTGTCTTTCCAATC 1527
consensus_7591#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||