Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7603 cluster # 7603       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7603#0 length = 1006 sequences # 5  

consensusID : consensus_7603#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1006
fasta sequence
                              [GAAGGAGTAGAAAATCATCCCTCGTTGTCGTTTTAAACAACTTGATCAGGTGATCAATCAAATCAATAGAAACGATGGCTGCAGGCTTGCAAGTGTTTGGCCAGCCAGCATCTACTGATGTTGCCAGGGTCCTGACATGCCTCTTTGAGAAGGATCTGGAATTTGAACTTGTCTGCATTGATACATTCAAGAGAGAGCACAAGCTTCCTGAGTTCATTAAGCTGCGGGATCCTAATGGGCAAGTGACATTTAAACATGGTGACAAAACCATCGTCGATTCAAGGGCTATATGCCGGTACGTTTGTACTCAGTTTCCAGAGGGAAATAAGACCCTTTATGGAAC-GGGATCTCTAGAACGGGCATCAATAGAACAGTGGCTTCAAGCAGAAGCTCAAAATTTCAGCCCTCCCAGCTCGGCCCTCGTCTTCCATCTCGCATTTGCTCCCCATCTGAACATTCCCCAGGACCATGCTGTTATTGCAGAAAATGAGAAGAAACTTCAGCAAGTCCTCAATGTTTATGATGAGATACTCTCAAAGAATGAGTACCTGGCTGGTGATGAGTTCACCCTGGCTGACCTTTCTCACCTTCCAAACTCACATTACATTGTGAGTTCTGAGAGAGGAAGGAAGCTCTTCACTGGCAGGAAGAATGTGGCAAGGTGGTACGACCAAATCTCAAAGCGCGAGACATGGAAGCAGGTGGTCAAGATGCAGAGGGAGCATCCGGGTGCATTCGAGTAATGGCCTGATATATTGCCCAAGTTCA-TCGTGTCCGTTGTCGATCGATCTGGCTTCTGCTGTCCTGTGTT-GTCATCGTCGCTAGT-TTGCC-TGTCCCCTGCTTATATTGTCGTGTGACCAAATAATATGAAGCCTCTTCTTGTTGTGACGTAGT-TTCATACCATGTACCTCGTTGCTTTACAGGTCATTTGTTTTCTCCCTTGTTTAGTGATTAAATAAAATTGTTAATCGACCTGGCAGNTCTAAATCTGGTGGTTTCTTCGCCT]

[+] EMBL CF312867             [GAAGGAGTAGAAAATCATCCCTCGTTGTCGTTTTAAACAACTTGATCAGGTGATCAATCAAATCAATAGAAACGATGGCTGCAGGCTTGCAAGTGTTTGGCCAGCCAGCATCTACTGATGTTGCCAGGGTCCTGACATGCCTCTTTGAGAAGGATCTGGAATTTGAACTTGTCTGCATTGATACATTCAAGAGAGAGCACAAGCTTCCTGAGTTCATTAAGCTGCGGGATCCTAATGGGCAAGTGACATTTAAACATGGTGACAAAACCATCGTCGATTCAAGGGCTATATGCCGGTACGTTTGTACTCAGTTTCCAGAGGGAAATAAGACCCTTTATGGAACNGGGATCTCTAGAACGGGCATCAATAGAACAGTGGCTTCAAGCAGAAGCTCAAAATTTCAGCCCTCCCAGCTCGGCCCTCGTCTTCCATCTCGCATTTGCTCCCCATCTGAACATTCCCCAGGACCATGCTGTTATTGCAGAAAATGAGAAGAAACTTCAGCAAGTCCTCAATGTTTATGATGAGATACTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA766885             [                                                                                                                                                                                                                                                                                                      GGTACGTTTGTACTCAGTTTCCAGAGGGAAATAAGACCCTTTATGGAAC GGGATCTCTAGAACGGGCATCAATAGAACAGTGGCTTCAAGCAGAAGCTCAAAATTTCAGCCCTCCCAGCTCGGCCCTCGTCTTCCATCTCGCATTTGCTCCCCATCTGAACATTCCCCAGGACCATGCTGTTATTGCAGAAAATGAGAAGAAACTTCAGCAAGTCCTCAATGTTTATGATGAGATACTCTCAAAGAATGAGTACCTGGCTGGTGATGAGTTCACCCTGGCTGACCTTTCTCACCTTCCAAACTCACATTACATTGTGAGTTCTGAGAGAGGAAGGAAGCTCTTCACTGGCAGGAAGAATGCGGCAAGGTGGTACGACCAAATCTCAAAGCGCGAGACATGGAAGCAGGTGGTCAAGATGCAGAGGGAGCATCCGGGTGCATTCGAGTAATGGCCTGATATATTGCCCAAGTTCA TCGTGTCCGTTGTCGATCGATCTGGCTTCTGCTGTCCTGTGTT GTCATCGTCGCTAGT TTGCC TGTCCCCTGCTTATATTGTCGTGTGACCAAATAATATGAAGCCTCTTCTTGNTGTGACGTAGT TTCATACCATGTACCTCGNTGCTTTACAGGTCATTTGGTTTCTCCCTTGGTTAGTGATTAAATAAAATTGGTAATCGACCTGGCAGNTCTAAATCTGGTGGTTTCTTCGCCT]
[+] EMBL AK059226             [                                                                                                                                                                                                                                                                                                                                                                           TCAATAGAACAGTGGCTTCAAGCAGAAGCTCAAAATTTCAGCCCTCCCAGCTCGGCCCTCGTCTTCCATCTCGCATTTGCTCCCCATCTGAACATTCCCCAGGACCATGCTGTTATTGCAGAAAATGAGAAGAAACTTCAGCAAGTCCTCAATGTTTATGATGAGATACTCTCAAAGAATGAGTACCTGGCTGGTGATGAGTTCACCCTGGCTGACCTTTCTCACCTTCCAAACTCACATTACATTGTGAGTTCTGAGAGAGGAAGGAAGCTCTTCACTGGCAGGAAGAATGTGGCAAGGTGGTACGACCAAATCTCAAAGCGCGAGACATGGAAGCAGGTGGTCAAGATGCAGAGGGAGCATCCGGGTGCATTCGAGTAATGGCCTGATATATTGCCCAAGTTCA TCGTGTCCGTTGTCGATCGATCTGGCTTCTGCTGTCCTGTGTT GTCATCGTCGCTAGT TTGCC TGTTCCCTGCTTATATTGTCGTGTGACCAAATAATATGAAGCCTCTTCTTGTTGTGACGTAGT TTCATACCATGTACCTCGTTGCTTTACAGGTCATTTGTTTTCTCCCTTGTTTAGTGATTAAATAAAATTGTTAATCGACC                                ]
[-] EMBL BU673812             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAATGAGATGAAACTTCAGCAAGTCCTCAATGTTTATGATGAGATACTCTCAAAGAATGAGTACCTGGCTGGTGATGAGTTCACCCTGGCTGACCTTTCTCACCTTCCAAACTCACATTACATTGTGAGTTCTGAGAGAGGAAGGAAGCTCTTCACTGGCAGGAAGAATGTGGCAAGGTGGTACGACCAAATCTCAAAGCGCGAGACATGGAAGCAGGTGGTCAAGATGCAGAGGGAGCATCCGGGTGCATTCGAGTAATGGCCTGATATATTGCCCAAGTTCA TCGTGTCCGTTGTCGATCGATCTGGCTTCTGCTGTCCTGTGTT GTCATCGTCGCTAGT TTGCC TGTCCCCTGCTTATATTGTCGTGTGACCAAATAATATGAAGCCTCTTCTTGTTGTGACGTAGT TTCATACCATGTACCTCGTTGCTTTACAGGTCATTTGTTTTTTCCCTTGTTTAGTGATTAAATAAAATTGTTAATCGACCTGGCAG                          ]
[-] EMBL BU673645             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gtAGAGAGGTAGGAAGCTCTTCACTGGCAGGAAGAATGTGGCAAGGTGGTACGACCCAATTTCAAAGCGCGAGACATGGAACCAGGTGGTCAAGATGCAGAGGGAGCATCCGGGGGCATTCGAGTAATGGCCTGATATATTGCCCAAGTTCAGTCGTGTCCGTTGTCGATCGATCTGGCTTCTGCTGTCCTGTGTTGGTCATCGTCGCTAGTGTTGCCGTGTCCCCTGCTTATATTGTCGGGTGACCCAATAATATGAAGCCTCTTCTTGTTGTGACGTAGTGTTCATACCATGTACCTCGGTGCTTTACAGGTCATTGGTTTTCTCCCTTGTTTAGGGATTAAATAAAATTGTTAATCGACCT                               ]


>consensus_7603#0 GAAGGAGTAGAAAATCATCCCTCGTTGTCGTTTTAAACAACTTGATCAGGTGATCAATCA AATCAATAGAAACGATGGCTGCAGGCTTGCAAGTGTTTGGCCAGCCAGCATCTACTGATG TTGCCAGGGTCCTGACATGCCTCTTTGAGAAGGATCTGGAATTTGAACTTGTCTGCATTG ATACATTCAAGAGAGAGCACAAGCTTCCTGAGTTCATTAAGCTGCGGGATCCTAATGGGC AAGTGACATTTAAACATGGTGACAAAACCATCGTCGATTCAAGGGCTATATGCCGGTACG TTTGTACTCAGTTTCCAGAGGGAAATAAGACCCTTTATGGAACGGGATCTCTAGAACGGG CATCAATAGAACAGTGGCTTCAAGCAGAAGCTCAAAATTTCAGCCCTCCCAGCTCGGCCC TCGTCTTCCATCTCGCATTTGCTCCCCATCTGAACATTCCCCAGGACCATGCTGTTATTG CAGAAAATGAGAAGAAACTTCAGCAAGTCCTCAATGTTTATGATGAGATACTCTCAAAGA ATGAGTACCTGGCTGGTGATGAGTTCACCCTGGCTGACCTTTCTCACCTTCCAAACTCAC ATTACATTGTGAGTTCTGAGAGAGGAAGGAAGCTCTTCACTGGCAGGAAGAATGTGGCAA GGTGGTACGACCAAATCTCAAAGCGCGAGACATGGAAGCAGGTGGTCAAGATGCAGAGGG AGCATCCGGGTGCATTCGAGTAATGGCCTGATATATTGCCCAAGTTCATCGTGTCCGTTG TCGATCGATCTGGCTTCTGCTGTCCTGTGTTGTCATCGTCGCTAGTTTGCCTGTCCCCTG CTTATATTGTCGTGTGACCAAATAATATGAAGCCTCTTCTTGTTGTGACGTAGTTTCATA CCATGTACCTCGTTGCTTTACAGGTCATTTGTTTTCTCCCTTGTTTAGTGATTAAATAAA ATTGTTAATCGACCTGGCAGNTCTAAATCTGGTGGTTTCTTCGCCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)