These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1197 fasta sequence [CTAACCTCGCGCGCCACCTCTCCTCTCCTCGTCCTCCGCCTCCGGACGCGCAGTTCACGGGCGCCCTAATGGCGAAAAAGGGCAAGGCGGCGGCGGCGGAGGCCGCGGCGCCCGACGCGGGGGTATCGAGCCCGCAGGGCGGCGGCGGGGAGAAGGAGGGCAGCTTCCTGCTGGGCTCGCCGACCTGGGAGGACGCCGGGGGCGGGCGGTGGCGGTGCAAGGAGACGGGGCACGAGCTGCCGGAGCGGGAGAAGGAGGCGTACGGGCGGTCCCGCGCGTGCAGGCTCGCGCTCATCGACCAAGCCGTCGCGCGCAAGAAGCCGCCGCTCAACGCCTTCAAGCCTCACCCCGAGCACAAGTCGAAGCTTATATGCAATATTACTGGGGACATTATAAACAAGTCGGAGGAACACATCTGGAAGCACATCAATGGGAAGAGGTTCCTCAACAAACTAGAAAAACTAGAAGAAAAGATGGCATCAGGTGAAATGGCCGAAGGTGAAGCTGAACAGTCAAATGAAGGGGAAAATAAAACCAAGTCAAGGAAGAAGAAGGACAAGAAGAAAGCTGCTGTTGTTAACCCTTCTTTGCCACGAGAACCTAAACCAGAGATTGATGATTCAGATAATTCTGATGATCCAGATTTCTGGGTGCCTCCTGTTGGAAGTCGTTGGGATGATGATGATGGAAAAGACCGATGGACCTCCTCTCCAGTGAAGGATAAGGATGATGCAGCAGAGGATGAAGATGGTGATGACGATGGTGATGACATGGCTGACAAGGATGACAAGGAGACAAGAGAAATTGCTTCA---AGGACAAAGCGACTGTCAGTAGAAGCAGTTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGGTCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTGATCTTTCTGTGTGGACGAACAAAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAGAATGAACTGTGCTACTTGTCCTATATTTATTCTTGCTATATAACTTCATATGTTTCTTTTGTA] [+] EMBL AK068996 [CTAACCTCGCGCGCCACCTCTCCTCTCCTCGTCCTCCGCCTCCGGACGCGCAGTTCACGGGCGCCCTAATGGCGAAAAAGGGCAAGGCGGCGGCGGCGGAGGCCGCGGCGCCCGACGCGGGGGTATCGAGCCCGCAGGGCGGCGGCGGGGAGAAGGAGGGCAGCTTCCTGCTGGGCTCGCCGACCTGGGAGGACGCCGGGGGCGGGCGGTGGCGGTGCAAGGAGACGGGGCACGAGCTGCCGGAGCGGGAGAAGGAGGCGTACGGGCGGTCCCGCGCGTGCAGGCTCGCGCTCATCGACCAAGCCGTCGCGCGCAAGAAGCCGCCGCTCAACGCCTTCAAGCCTCACCCCGAGCACAAGTCGAAGCTTATATGCAATATTACTGGGGACATTATAAACAAGTCGGAGGAACACATCTGGAAGCACATCAATGGGAAGAGGTTCCTCAACAAACTAGAAAAACTAGAAGAAAAGATGGCATCAGGTGAAATGGCCGAAGGTGAAGCTGAACAGTCAAATGAAGGGGAAAATAAAACCAAGTCAAGGAAGAAGAAGGACAAGAAGAAAGCTGCTGTTGTTAACCCTTCTTTGCCACGAGAACCTAAACCAGAGATTGATGATTCAGATAATTCTGATGATCCAGATTTCTGGGTGCCTCCTGTTGGAAGTCGTTGGGATGATGATGATGGAAAAGACCGATGGACCTCCTCTCCAGTGAAGGATAAGGATGATGCAGCAGAGGATGAAGATGGTGATGACGATGGTGATGACATGGCTGACAAGGATGACAAGGAGACAAGAGAAATTGCTTCAAGCAGGACAAAGCGACTGTCAGTAGAAGCAGTTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGGTCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTGATCTTTCTGTGTGGACGAACAAAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAGAATGAACTGTGCTACTTGTCCTATATTTATTCTTGCTATATAACTTCATATG ] [+] EMBL CA764179 [ ggggGATTCAGATAATTCTGATGATCCAGATTTCTGGGTGCCTCCTGTTGGAAGTCGTTGGGATGATGATGATGGAAAAGACCGATGGACCTCCTCTCCAGTGAAGGATAAGGATGATGCAGCAGAGGATGAAGATGGTGATGACGATGGTGATGACATGGCTGACAAGGATGACGAGGAGACAAGAGAAATTGCTTCA AGGACAAAGCGACTGTCAGTAGAAGCAGTTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGGTCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTGATCTTTCTGTGTGGACGAACAAAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATATTTGCATTAGTTAATTCCTGTGATTTTGATGTGAGAATGAACTGTGCTACTTGTCCTATATTTATTCTTGCTATATAACTTCATATGTTTCTTTTGTA] [+] EMBL C97811 [ GACATGGCTGACAAGGATGACAAGGAGACAAGAGAAATTNCTTCA AGGACAAAGCGACTGTCAGTAGAAGCAGTTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGGTCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTNATCTTTCTGTGTGGACGAACAAAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTNAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGnaa ] consensusID : consensus_7605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [TAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAATATCACTGTCATGCCGTTACGAACCGTAT] [+] EMBL CF330898 [TAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAATATCACTGTCATGCCGTTACGAACCGTAT] consensusID : consensus_7605#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [ATGGAGTTAAGGAGTAGAAATTTTGTATTAATTGGTTTGCTTTTAGTTAGGGGTTCTTTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCAAGGCAATTTTCTAAAATTGCATTAGTTAATTCCTGTGATTTTGATGGTAAAAAAAAAAAAAAAAAAA] [-] EMBL CF330897 [ATGGAGTTAAGGAGTAGAAATTTTGTATTAATTGGTTTGCTTTTAGTTAGGGGTTCTTTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCAAGGCAATTTTCTAAAATTGCATTAGTTAATTCCTGTGATTTTGATGGTAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 CTAACCTCGCGCGCCACCTCTCCTCTCCTCGTCCTCCGCCTCCGGACGCGCAGTTCACGG 60 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 GCGCCCTAATGGCGAAAAAGGGCAAGGCGGCGGCGGCGGAGGCCGCGGCGCCCGACGCGG 120 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 GGGTATCGAGCCCGCAGGGCGGCGGCGGGGAGAAGGAGGGCAGCTTCCTGCTGGGCTCGC 180 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 CGACCTGGGAGGACGCCGGGGGCGGGCGGTGGCGGTGCAAGGAGACGGGGCACGAGCTGC 240 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 CGGAGCGGGAGAAGGAGGCGTACGGGCGGTCCCGCGCGTGCAGGCTCGCGCTCATCGACC 300 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 AAGCCGTCGCGCGCAAGAAGCCGCCGCTCAACGCCTTCAAGCCTCACCCCGAGCACAAGT 360 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 CGAAGCTTATATGCAATATTACTGGGGACATTATAAACAAGTCGGAGGAACACATCTGGA 420 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 AGCACATCAATGGGAAGAGGTTCCTCAACAAACTAGAAAAACTAGAAGAAAAGATGGCAT 480 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 CAGGTGAAATGGCCGAAGGTGAAGCTGAACAGTCAAATGAAGGGGAAAATAAAACCAAGT 540 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 CAAGGAAGAAGAAGGACAAGAAGAAAGCTGCTGTTGTTAACCCTTCTTTGCCACGAGAAC 600 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 CTAAACCAGAGATTGATGATTCAGATAATTCTGATGATCCAGATTTCTGGGTGCCTCCTG 660 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 TTGGAAGTCGTTGGGATGATGATGATGGAAAAGACCGATGGACCTCCTCTCCAGTGAAGG 720 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 ATAAGGATGATGCAGCAGAGGATGAAGATGGTGATGACGATGGTGATGACATGGCTGACA 780 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 AGGATGACAAGGAGACAAGAGAAATTGCTTCAAGGACAAAGCGACTGTCAGTAGAAGCAG 840 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 TTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGG 900 consensus_7605#1 ------------------------------------------------------------ consensus_7605#2 ------------------------------------------------------------ consensus_7605#0 TCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTGATCTTTCTGTGTGGACGAACA 960 consensus_7605#1 ---------------------------------------------------TAATTGGTT 9 consensus_7605#2 -----------------------ATGGAGTTAAGGAGTAGAAATTTTGTATTAATTGGTT 37 consensus_7605#0 AAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTT 1020 ********* consensus_7605#1 TGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTAT 69 consensus_7605#2 TGCTTTTAGTTAGGGGTTCTTTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTAT 97 consensus_7605#0 TGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTAT 1080 ************* * **** *************************************** consensus_7605#1 TGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAAAAAAAA 129 consensus_7605#2 TGCAAGGCAATTTTCTAAAATTGCATTAGTTAATTCCTGTGATTTTGATGGTAAAAAAAA 157 consensus_7605#0 TGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAGAATGAA 1140 **** * ***** **** * ****************************** * ** ** consensus_7605#1 AAAAAAAAAA-AAAAAAAAAATATCACTGTCATGCCGTTACGAACCGTAT------- 178 consensus_7605#2 AAAAAAAAAA-A--------------------------------------------- 168 consensus_7605#0 CTGTGCTACTTGTCCTATATTTATTCTTGCTATATAACTTCATATGTTTCTTTTGTA 1197 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||