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Oryza sativa
cluster # 7607 cluster # 7607       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7607#0 length = 1374 sequences # 4  
consensus_7607#1 length = 288 sequences # 1  

consensusID : consensus_7607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1374
fasta sequence
                              [ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCGGCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAATCCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGCTCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTCCTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGT-GGCGCGGTGCTGCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCTTGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGTATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAG-TTGGTTTGCCTCCTAAGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCAGACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGTTGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTGGACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATAATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTTGCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTTGTTGAGGGGGACTTCG-ATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGA-ACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA]

[+] EMBL AK070222             [ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCGGCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAATCCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGCTCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTCCTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGT GGCGCGGTGCTGCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCTTGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGTATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAG TTGGTTTGCCTCCTAAGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCAGACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGTTGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTGGACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATAATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTTGCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTTGTTGAGGGGGACTTCG ATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGA ACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGT                ]
[+] EMBL CF312997             [                                                                                  CTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAATCCCCTCGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGCTCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTCCTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGTGGGCGCGGTGCTGCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCTTGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGTATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAGTTTGGTTTGCCTCCTAAGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCAGACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGTTGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CF312998             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAGTTTGCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTTGTTGAGGGGGACTTCGNATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGACACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA]
[+] EMBL BI811607             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCTCATGGTGCATGTATTAGGTCAGGTAA CGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTT TTGAGGGGGACTTCG ATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGA ACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCC ATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCC AACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAA ]


>consensus_7607#0 ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCG GCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAAT CCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGC TCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTC CTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGTGGCGCGGTGCT GCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCT TGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGT ATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAGTTGGTTTGCCTCCTA AGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCA GACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGT TGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTG GACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATA ATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTT GCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGG CTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGG CTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAAT GGTTTGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGG GAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACA TGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGA AAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATAC CAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAA GTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAAC CAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA



consensusID : consensus_7607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence
                              [GGCCGCTTTGGAACTTGGAACATCGCAGCATTTTAAATTGGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGATATGGTCAGAGTACGGAAAGAAGTCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATACCTCTACAAATACCAGGAAAGGTGTCCAAGTCAA]

[+] EMBL OS31694              [GGCCGCTTTGGAACTTGGAACATCGCAGCATTTTAAATTGGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGATATGGTCAGAGTACGGAAAGAAGTCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATACCTCTACAAATACCAGGAAAGGTGTCCAAGTCAA]


>consensus_7607#1 GGCCGCTTTGGAACTTGGAACATCGCAGCATTTTAAATTGGTTGAGGGGGACTTCGATGC ATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGAACTGTTAATGGC TTCGCATGTTCTTCGGATGCCATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTA ATAGCAATTGCAGATATGGTCAGAGTACGGAAAGAAGTCAATTCAAGTTCTTTTTCATGG TTTTGGCCATTATACCTCTACAAATACCAGGAAAGGTGTCCAAGTCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7607#0      ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCG 60
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      GCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAAT 120
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      CCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGC 180
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      TCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTC 240
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      CTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGTGGCGCGGTGCT 300
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      GCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCT 360
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      TGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGT 420
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      ATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAGTTGGTTTGCCTCCTA 480
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      AGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCA 540
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      GACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGT 600
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      TGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTG 660
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      GACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATA 720
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      ATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTT 780
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      GCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGG 840
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      CTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGG 900
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      CTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAAT 960
consensus_7607#1      -------------------GGCCGCTTTGGAACTTG----GAACATCGCAGCATTTTAA- 36
                                         ** ***    *** **     **     ****    * ** 

consensus_7607#0      GGTTTGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGG 1020
consensus_7607#1      -ATTGGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGG 95
                        ** *******************************************************

consensus_7607#0      GAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACA 1080
consensus_7607#1      GAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCA-TTACTGTGTACA 154
                      *********************************************** ************

consensus_7607#0      TGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGA 1140
consensus_7607#1      TGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGA-TATGGTCAG-AGTACGG-A 211
                      **************************************** ********* ******* *

consensus_7607#0      AAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATAC 1200
consensus_7607#1      AAGAAG--TCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATAC--CTCTACAAATAC 267
                      ******   ***********************************    ******* ****

consensus_7607#0      CAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAA 1260
consensus_7607#1      CAGGAAAGGT--GTCCAAG-TCAA------------------------------------ 288
                      *********   ******* ****                                    

consensus_7607#0      GTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAAC 1320
consensus_7607#1      ------------------------------------------------------------
                                                                                  

consensus_7607#0      CAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA 1374
consensus_7607#1      ------------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)