These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1374 fasta sequence [ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCGGCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAATCCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGCTCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTCCTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGT-GGCGCGGTGCTGCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCTTGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGTATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAG-TTGGTTTGCCTCCTAAGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCAGACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGTTGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTGGACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATAATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTTGCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTTGTTGAGGGGGACTTCG-ATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGA-ACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA] [+] EMBL AK070222 [ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCGGCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAATCCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGCTCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTCCTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGT GGCGCGGTGCTGCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCTTGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGTATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAG TTGGTTTGCCTCCTAAGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCAGACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGTTGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTGGACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATAATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTTGCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTTGTTGAGGGGGACTTCG ATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGA ACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGT ] [+] EMBL CF312997 [ CTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAATCCCCTCGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGCTCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTCCTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGTGGGCGCGGTGCTGCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCTTGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGTATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAGTTTGGTTTGCCTCCTAAGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCAGACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGTTGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTGG ] [-] EMBL CF312998 [ AAGTTTGCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTTGTTGAGGGGGACTTCGNATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGACACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA] [+] EMBL BI811607 [ GGCTCATGGTGCATGTATTAGGTCAGGTAA CGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAATGGTTT TTGAGGGGGACTTCG ATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGA ACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCC ATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCC AACAGTAAGTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAA ] consensusID : consensus_7607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [GGCCGCTTTGGAACTTGGAACATCGCAGCATTTTAAATTGGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGATATGGTCAGAGTACGGAAAGAAGTCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATACCTCTACAAATACCAGGAAAGGTGTCCAAGTCAA] [+] EMBL OS31694 [GGCCGCTTTGGAACTTGGAACATCGCAGCATTTTAAATTGGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGATATGGTCAGAGTACGGAAAGAAGTCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATACCTCTACAAATACCAGGAAAGGTGTCCAAGTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7607#0 ATGCGCGGTGGATATCGATTAGGCGTCGTCTCATCGTCTTCCTCCTCGCGTGCGGCGGCG 60 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 GCGCGCCAGTGGCCGTGACTGACTCTGCGCCGGCGGCGGCGGCGGCGTGCACCGGCGAAT 120 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 CCCCTTGCGGGAACGGAGGTCTAAAGCCTCTCCCGCCACCACTATCCCTTCCTCTTCGGC 180 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 TCACGCTCCCGTCCCCAATAACCTCCGCTTTCGTCAGCTCCATTCTTGCAGGCGTCTCTC 240 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 CTCGGCTCCGCTCGCTTCGGACAGTCCGAAGGCTAAGCTTATACTTGGTGGCGCGGTGCT 300 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 GCCTGAAGCAGATGGCTATCTACACACCTACTGTCTGTTTACAACGCTGTACTTATAGCT 360 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 TGTATTCTCAGTCTTGTCAGTTACAAGGAGGGCTGACACAGGGCATGGCATTATGGAAGT 420 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 ATTCTCGTTCACAAGCAGTCGGTTATCATGTAAAGATCAGATTAGTTGGTTTGCCTCCTA 480 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 AGATGAACATAAAATCACTGCGAACATGTTTTGCCAGTTCGGGGAAACAGTTGTGTGGCA 540 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 GACAACCTGCGAGGGATAATATTCTAAAGCTAAAGCTTGATGAGCCCTCACGTCAGAAGT 600 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 TGTATAGTATTCTCTGGGATTCAAGAAGCATAGGACACAAAGTTGGAGCTACAGGCACTG 660 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 GACTTTTCCTAAGTTTTGCAGTTCCTGCGAAGGCAAATGCTGAGGGTCCTGTGGACAATA 720 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 ATACTGATAGCCCCCAAACTACTGAATCGTCCACTAGTTATGCTCATGGGAAAAAAGTTT 780 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 GCACGGATTATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGG 840 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 CTCATGGTGCATGTATTAGGTCAGGTAAGCGACCTGATGATGATCTCCAGAGAAAGATGG 900 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 CTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGGCAGAGACTGAAT 960 consensus_7607#1 -------------------GGCCGCTTTGGAACTTG----GAACATCGCAGCATTTTAA- 36 ** *** *** ** ** **** * ** consensus_7607#0 GGTTTGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGG 1020 consensus_7607#1 -ATTGGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGG 95 ** ******************************************************* consensus_7607#0 GAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACA 1080 consensus_7607#1 GAGGTGAACCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCA-TTACTGTGTACA 154 *********************************************** ************ consensus_7607#0 TGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGAATATGGTCAGGAGTACGGGA 1140 consensus_7607#1 TGCATGATAAGGAAGCTGGTGGTTTAATAGCAATTGCAGA-TATGGTCAG-AGTACGG-A 211 **************************************** ********* ******* * consensus_7607#0 AAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACGCTCTACAGATAC 1200 consensus_7607#1 AAGAAG--TCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATAC--CTCTACAAATAC 267 ****** *********************************** ******* **** consensus_7607#0 CAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAA 1260 consensus_7607#1 CAGGAAAGGT--GTCCAAG-TCAA------------------------------------ 288 ********* ******* **** consensus_7607#0 GTTTTGAACCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAAC 1320 consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 CAGAATCTACCCTCAACAAATTTAAAATGCTGCGATGTTCCAAGTTCCAAAAAA 1374 consensus_7607#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||