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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1216 fasta sequence
[ACACGACTCCTCCGGTCCTCCCATCCTGACCCAACCGCTGCTGCTCCAGCATGCGCATCCTCCGGGGAATCCTCGCCGTCTCCGGCCACCTCGCCGGCCGCCGCGCGCCGGCGAACAACGCCCACCTGGCACTCTTCTCCCGCGCCCTCCAAATCCTCGCCCAGCAGGAGCCCGTCCGCCTCCAGAAGCTCTCGGCGCCCGACTCCGGGATCGTGGAGATGAGGCTGGAGCGGCCGGAGGCCAGGAACGCCATCGGGAGGGAGATGCTCCAGGGGTTGCGGAGCGCGATCGAGAAGGTGAAGGCTGACGCGACGGCGAAAGTCGTGCTGCTGGCGAGCTCCGTCCCGAAGGTTTTCTGCGCTGGCGCTGATCTCAAGGAAAGGAGGTTAATGAGCCCTTGCGAAGTTCGCGAATTTGTCAATTCCCTAAGATCTACATTCCTGTCCTTTGAGGCATTGTCAATTCCTACAATTGCCATTGTTGAGGGAGCTGCTTTTGGCGGTGGGTTAGAATTGGCTCTTTCTTGTGATCTCCGTATATGTGGGGAAAATGCAACATTTAGCTTGCCAGAAACTGGCCTTGCTATTATTCCTGGAGCTGGGGGAACGCAGCGTCTTCCTAGGATTGTTGGAAAGTCCAGAGCAAAGGAATTAATATTCACTGGTCGTAGATTCGATGCAGTAGAAGCTGTAACCATGGGAGTAGTAAACTACTGTGTTCCCGCTGGGGAGGCTTATAAAAGGGCTCTTGAACTTGCCCAGGAGATAAATCAGAAAGGTCCGTTAGCGATAAGAATGGCTAAGAAGGCCATCAATCAAGGCATGGAGGTAGATCTGTCCGCCGGATTGGCTGTCGAAGAAGAATGCTACGAGCAAGTTCTGCACACTCAAGATCGTCTTGAAGGTCTAGCTGCATTTGCTGAGAAAAGGAAACCTGTATACACAGGGAAATAAGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTCTCACATCCAGAAGGGTTGAGCAGGTTATTTTTAGACTTTCTACTGTGTTCATATCTTTCTCCATACATGTAAGAAGAACAAGATACATCTGCCAATTCATGCTACATTTTATCAAGTTAATAAGGTTACACATGTTTTTTGCACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTACGTTGAC]
[+] EMBL AK101814 [ACACGACTCCTCCGGTCCTCCCATCCTGACCCAACCGCTGCTGCTCCAGCATGCGCATCCTCCGGGGAATCCTCGCCGTCTCCGGCCACCTCGCCGGCCGCCGCGCGCCGGCGAACAACGCCCACCTGGCACTCTTCTCCCGCGCCCTCCAAATCCTCGCCCAGCAGGAGCCCGTCCGCCTCCAGAAGCTCTCGGCGCCCGACTCCGGGATCGTGGAGATGAGGCTGGAGCGGCCGGAGGCCAGGAACGCCATCGGGAGGGAGATGCTCCAGGGGTTGCGGAGCGCGATCGAGAAGGTGAAGGCTGACGCGACGGCGAAAGTCGTGCTGCTGGCGAGCTCCGTCCCGAAGGTTTTCTGCGCTGGCGCTGATCTCAAGGAAAGGAGGTTAATGAGCCCTTGCGAAGTTCGCGAATTTGTCAATTCCCTAAGATCTACATTCCTGTCCTTTGAGGCATTGTCAATTCCTACAATTGCCATTGTTGAGGGAGCTGCTTTTGGCGGTGGGTTAGAATTGGCTCTTTCTTGTGATCTCCGTATATGTGGGGAAAATGCAACATTTAGCTTGCCAGAAACTGGCCTTGCTATTATTCCTGGAGCTGGGGGAACGCAGCGTCTTCCTAGGATTGTTGGAAAGTCCAGAGCAAAGGAATTAATATTCACTGGTCGTAGATTCGATGCAGTAGAAGCTGTAACCATGGGAGTAGTAAACTACTGTGTTCCCGCTGGGGAGGCTTATAAAAGGGCTCTTGAACTTGCCCAGGAGATAAATCAGAAAGGTCCGTTAGCGATAAGAATGGCTAAGAAGGCCATCAATCAAGGCATGGAGGTAGATCTGTCCGCCGGATTGGCTGTCGAAGAAGAATGCTACGAGCAAGTTCTGCACACTCAAGATCGTCTTGAAGGTCTAGCTGCATTTGCTGAGAAAAGGAAACCTGTATACACAGGGAAATAAGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTCTCACATCCAGAAGGGTTGAGCAGGTTATTTTTAGACTTTCTACTGTGTTCATATCTTTCTCCATACATGTAAGAAGAACAAGATACATCTGCCAATTCATGCTACATTTTATCAAGTTA ]
[-] EMBL CF330746 [ aaAAATCAGAAAGGTCCGTTAGCGATAAGAATGGTTAAGAAGGCCATCAATCAAGGCATGGAGGTAGTTCTGTCCGCCGGATTGGCTGTCAAAAAAGAATGTTACGAGCAAGTTTTGCACACTCAAGATCGTCTTAAAGGTCTAGCTGCATTTGTTGAGAAAAGGAACCCTGTATACACAGGGAAATAAGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTTTCACATCCAGAAGGGTTGAGCAGGTTATTTTAAAACTTTCTACGGTGTTCATATCTTTCCCCATACATGTAAGAAGACCAAGATACATCTGCCAATTCATGCTACATTTTATCAAGTTAATAAGGTTACACATGTTTTTTGCACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTACGTTGAC]
[+] EMBL CF330745 [ AGGTCCGTTAGCGATAAGAATGGCTAAGAAGGCCATCAATCAAGGCATGGAGGTAGATCTGTCCGCCGGATTGGCTGTCGAAGAAGAATGCTACGAGCAAGTTCTGCACACTCAAGATCGTCTTGAAGGTCTAGCTGCATTTGCTGAGAAAAGGAAACCTGTATACACAGGGAAATAAGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTCTCACATCCAGAAGGGTTGAGCAGGTTATTTTTAGACTTTCTACTGTGTTCATATCTTTCTCCATACATGTAAGAAGAACAAGATACATCTGCCAATTCATGCTACATTNTATCAAGTTAATAAGGTTACACATGTTCTCTGC ]
consensusID : consensus_7608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[TTTTTTTTTTTGGCAAGGTTGGTATGTTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTTAAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGATCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAAGCTAGTCCCTCAAAAAATATCGGATGGAGAGAAACAAATGGATTGGCACCGCTGTTTCAATCTTTTTATCAACAAGTTTGGAAGGGTTAACAGCATAAGCACACCATTTTGCTTGAGACATTTCAACAAAAATCAAACTAGTTCCACTATGATATGCTATTCAAGTACAATAGAACAGCATAACAGACTTTTCGATAGGTTGCAATTTCCCACTTTGATATGATACACGGGGTTGCTGCACTATAGCAAGAGAACTGTGAAAAAAAGGGAACAGGTTTGGCATATACTGGAGGGTAAATGACTAGATTTTTTTTGACGACAGGTAAATGACTAGATTCACAAGCCAAACAATACTCCCATGTTATTTAATAAAGTGCCAGCTACATTTATTATAATTACTTACAAAAGTAAAGCGCCATCTTGAACACATACGCAGGAATAATAGCAAGGCCAGTTTCTGGCAAGCTAAATGTTGCATTTTCCCCTGA]
[+] EMBL CA762953 [TTTTTTTTTTTGGCAAGGTTGGTATGTTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTTAAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGATCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAAGCTAGTCCCTCAAAAAATATCGGATGGAGAGAAACAAATGGATTGGCACCGCTGTTTCAATCTTTTTATCAACAAGTTTGGAAGGGTTAACAGCATAAGCACACCATTTTGCTTGAGACATTTCAACAAAAATCAAACTAGTTCCACTATGATATGCTATTCAAGTACAATAGAACAGCATAACAGACTTTTCGATAGGTTGCAATTTCCCACTTTGATATGATACACGGGGTTGCTGCACTATAGCAAGAGAACTGTGAAAAAAAGGGAACAGGTTTGGCATATACTGGAGGGTAAATGACTAGATTTTTTTTGACGACAGGTAAATGACTAGATTCACAAGCCAAACAATACTCCCATGTTATTTAATAAAGTGCCAGCTACATTTATTATAATTACTTACAAAAGTAAAGCGCCATCTTGAACACATACGCAGGAATAATAGCAAGGCCAGTTTCTGGCAAGCTAAATGTTGCATTTTCCCCTGA]
consensusID : consensus_7608#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[TTTTTTTTTTTTGGCAAGGTTGGTATGTTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTTAAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGATCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAAGCTAGTCCCTCAAAAAATATCGGATGGAGAGAAACAAATGGATTGGCACCGTTGTTTCAATCTTTTTATCAACAAGTTTGGAAGGGTTAATAGCAGTAGCAGGGTCCGACTTATTAAGAGGGATATGTATATATGTCCTCAATTCCTCATATACGTTAAGACTTACTAGATGGATGGTTGAAATGCTGGTTACTGGCTAGCTATGGTCAGTAAGTACAAGTGTACACACCAACTAATCAAAGTGTCCTTGTGCAGATGGTATTGATTGAAGAAGTTTGTTTGAATTATTGAGCATTTGAAATAAGTGCTATCCACCACGGCGTANATAACTTTTGTGTCAGTTATGGAACTAAAAGCATTGTAGCTATAGTATAGGAAAAAAATGGTGAATGCTTTGTAAGTACTTATGTCCCCTTGTCTC]
[+] EMBL CA761246 [TTTTTTTTTTTTGGCAAGGTTGGTATGTTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTTAAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGATCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAAGCTAGTCCCTCAAAAAATATCGGATGGAGAGAAACAAATGGATTGGCACCGTTGTTTCAATCTTTTTATCAACAAGTTTGGAAGGGTTAATAGCAGTAGCAGGGTCCGACTTATTAAGAGGGATATGTATATATGTCCTCAATTCCTCATATACGTTAAGACTTACTAGATGGATGGTTGAAATGCTGGTTACTGGCTAGCTATGGTCAGTAAGTACAAGTGTACACACCAACTAATCAAAGTGTCCTTGTGCAGATGGTATTGATTGAAGAAGTTTGTTTGAATTATTGAGCATTTGAAATAAGTGCTATCCACCACGGCGTANATAACTTTTGTGTCAGTTATGGAACTAAAAGCATTGTAGCTATAGTATAGGAAAAAAATGGTGAATGCTTTGTAAGTACTTATGTCCCCTTGTCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7608#1 ------------------------------------------------------------
consensus_7608#2 ------------------------------------------------------------
consensus_7608#0 ACACGACTCCTCCGGTCCTCCCATCCTGACCCAACCGCTGCTGCTCCAGCATGCGCATCC 60
consensus_7608#1 ------------------------------------------------------------
consensus_7608#2 ------------------------------------------------------------
consensus_7608#0 TCCGGGGAATCCTCGCCGTCTCCGGCCACCTCGCCGGCCGCCGCGCGCCGGCGAACAACG 120
consensus_7608#1 ------------------------------------------------------------
consensus_7608#2 ------------------------------------------------------------
consensus_7608#0 CCCACCTGGCACTCTTCTCCCGCGCCCTCCAAATCCTCGCCCAGCAGGAGCCCGTCCGCC 180
consensus_7608#1 ------------------------------------------------------------
consensus_7608#2 ------------------------------------------------------------
consensus_7608#0 TCCAGAAGCTCTCGGCGCCCGACTCCGGGATCGTGGAGATGAGGCTGGAGCGGCCGGAGG 240
consensus_7608#1 ------------------------------------------------------------
consensus_7608#2 ------------------------------------------------------------
consensus_7608#0 CCAGGAACGCCATCGGGAGGGAGATGCTCCAGGGGTTGCGGAGCGCGATCGAGAAGGTGA 300
consensus_7608#1 ------------------------------------------------------------
consensus_7608#2 ------------------------------------------------------------
consensus_7608#0 AGGCTGACGCGACGGCGAAAGTCGTGCTGCTGGCGAGCTCCGTCCCGAAGGTTTTCTGCG 360
consensus_7608#1 ------------------------------------------------------------
consensus_7608#2 ------------------------------------------------------------
consensus_7608#0 CTGGCGCTGATCTCAAGGAAAGGAGGTTAATGAGCCCTTGCGAAGTTCGCGAATTTGTCA 420
consensus_7608#1 ------------------------------------------TTTTTTTTTTTGGCAAGG 18
consensus_7608#2 -----------------------------------------TTTTTTTTTTTTGGCAAGG 19
consensus_7608#0 ATTCCCTAAGATCTACATTCCTGTCCTTTGAGGCATTGTCAATTCCTACAATTGCCATTG 480
** * *** ** *
consensus_7608#1 TTGGTATG-----TTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTT 73
consensus_7608#2 TTGGTATG-----TTTCAATTTTGAGTTAATGTGATGTTTTAATTGAGTGTTCTAATTTT 74
consensus_7608#0 TTGAGGGAGCTGCTTTTGGCGGTGGGTTAGAATTGGCTCTTTCTTGTGATCTCCGTATAT 540
*** *** ** **** * * ** *** * ** * *
consensus_7608#1 AAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGA 133
consensus_7608#2 AAGGGAGTAGTTGAATCGATCTGGAAAACTGATGATTGACGTACTCATTACTCAACATGA 134
consensus_7608#0 GTGGGGAAAATGCAAC--ATTTAGCTTGCCAGAAACTGGCCTTGCTATTATTCCTGGAGC 598
*** * * ** ** * * * * ** * * **** ** *
consensus_7608#1 TCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAA-GCTAG 192
consensus_7608#2 TCAGGAGCTTCAAACATCAATCAAGGCTTAAATGAGTTGTGACAGCATTGAGAA-GCTAG 193
consensus_7608#0 TGGGGGAACGCAG-CGTCTTCCTAGGATTGTTGGAAAGTCCAGAGCAAAGGAATTAATAT 657
* ** ** * ** * *** ** ** * **** * * **
consensus_7608#1 TCCCTCAAAAAATATCGGATGGAG-AGAAACAAATGGATTGGCACCGCTG--TTTCAATC 249
consensus_7608#2 TCCCTCAAAAAATATCGGATGGAG-AGAAACAAATGGATTGGCACCGTTG--TTTCAATC 250
consensus_7608#0 TCACTGGTCGTAGATTCGATGCAGTAGAAGCTGTAACCATGGGAGTAGTAAACTACTGTG 717
** ** * ** **** ** **** * *** * * * * *
consensus_7608#1 TTTTTATCAACAAG--TTTGGAAGGGTTAACAGCATAAGCACACCATTTTGCTTGAGACA 307
consensus_7608#2 TTTTTATCAACAAG--TTTGGAAGGGTTAATAGCAGTAGCAGG-------GTCCGACTTA 301
consensus_7608#0 TTCCCGCTGGGGAGGCTTATAAAAGGGCTCTTGAACTTGCCCAGGAGATAAATCAGAAAG 777
** ** ** ** ** * * **
consensus_7608#1 TTTCAACAAAAATCAAACTAGTTCCACTATGATATGCTATTCAAGTACAA---TAGAACA 364
consensus_7608#2 TTAAGAGGGATATGTATATATGTCCTCAAT-------TCCTCATATACGT---TAAGACT 351
consensus_7608#0 GTCCGTTAGCGATAAGAATGG--CTAAGAAGGCCATCAATCAAGGCATGGAGGTAGATCT 835
* ** * * * * * ** *
consensus_7608#1 GCATAACAGACTTTTCGATAGGTTGCAATTTCCCACTTTGATATGATACACGGG-GTTGC 423
consensus_7608#2 ---TACTAGATGGATGGTTGAAATGCTGGTTACTGGCTAGCTATGGTCAGTAAGTACAAG 408
consensus_7608#0 GTCCGCCGGATTGGCTGTCGAAGAAGAATGCTACGAGCAAGTTCTGCACACTCAAGATCG 895
** * *
consensus_7608#1 TGCACTATAGCAAGAGAACTGTGAAAAAAAGGGAACAGGTTTGGCATATACTGGAGGGTA 483
consensus_7608#2 TGTAC-ACACCAACTAATCAAAGTGTCCTTGTGCAGA----TGGTATTGATTGAAGAA-G 462
consensus_7608#0 TCTTGAAGGTCTAGCTGCATTTGCTGAGAAAAGGAAA---CCTGTATACACAGGGAAATA 952
* * * * * * * * * ** * *
consensus_7608#1 AATGACTAGATTTT-TTTTGACGACAGGTAAATGACTA----GATTCACAAGCCAAACAA 538
consensus_7608#2 TTTGTTTGAATTAT-TGAGCATTTGAAATAAGTG-CTA----TCCAC-CACGGCGTANAT 515
consensus_7608#0 AGGTTGTAAATGGTGTTAAAATTGCAAGTTGCTTTCAATTGAGCTTCTCACATCCAGAAG 1012
* ** * * * * * * * * * ** * *
consensus_7608#1 TACTCC-CATGTTATTTAATAAAGTGCCAGCTACATTTATTATAATTACTTACAAAAGTA 597
consensus_7608#2 AACTTT-TGTGTCAGTTATGGAACTAAAAGC-------ATTGTAGCTA-TAGTATAGGAA 566
consensus_7608#0 GGTTGAGCAGGTTATTT-TTAGACTTTCTACTGTGTTCAT-ATCTTTCTCCATACATGTA 1070
* ** * ** * * * ** * * * * * *
consensus_7608#1 AAGCGCCATCTTGAACACATACGCAGGAATAATAGCAAGGCCAGTTT--CTGGCAAGCTA 655
consensus_7608#2 AAAA---ATGGTGAATGCTTTGTAAGTACTTATGTCCC--CTTGTCT--C---------- 609
consensus_7608#0 AGAA---GAACAAGATACATCTGCCA-ATTCATGCTACATTTTATCAAGTTAATAAGGTT 1126
* * * * * * ** *
consensus_7608#1 AATGTTGCATTTTCCCCTGA---------------------------------------- 675
consensus_7608#2 ------------------------------------------------------------
consensus_7608#0 ACACATGTTTTTTGCACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1186
consensus_7608#1 ------------------------------
consensus_7608#2 ------------------------------
consensus_7608#0 ATGTCATGCCGTTACGTAGCGTACGTTGAC 1216
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||