These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1606 fasta sequence [CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTACCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCCGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGTCACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGGCGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGTGCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGGCAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAACCGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTCGTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGC-CTCGCCGCCTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGGCGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCAGCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGAGCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCACCGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACG-TCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGG-CTGGTGTCGCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCAT-GCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATCGCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATGAATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTGTTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA] [+] EMBL AK107370 [CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTACCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCCGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGTCACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGGCGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGTGCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGGCAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAACCGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTCGTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGC CTCGCCGCCTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGGCGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCAGCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGAGCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCACCGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACG TCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGG CTGGTGTCGCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCAT GCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATCGCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATGAATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTGTTTGTGGGTTTTAACAAAATATAAAGAAAAC ] [+] EMBL C22453 [ GAGCATCAACAGCGACGGCAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAACCGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTCGTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGCTTTCGCCGCCTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGNCGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGA ] [+] EMBL CB000916 [ CGCCGGCACGGTGCAGTACATGCGGCTGGAGCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCACCGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACG TCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGG CTGGTGTCGCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCATGGCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGG ] [+] EMBL C96934 [ ACATGCAGTGCAGCTGCCCCGACGCCGCAAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACGTTCGCC CCGGCNCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGGNCTTG GT TCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCAT GCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATCGCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATGAATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTGTTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA] consensusID : consensus_7611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [ATGCGGCACGGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGAGCGTNANCGACTACCCGACGGCGAAGCCANCGNACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGNGCGCGCCGGTNGCTGCGNCTCAACCCGGCGCGNCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCGAACTTCCTCCTCGGCGTCGCGTCGTGTACTNCAACANCGGCGCCGGGATCAACGCGGTNAACAACGGCATCCCGCAGTGGGTGT] [+] EMBL C26818 [ATGCGGCACGGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGAGCGTNANCGACTACCCGACGGCGAAGCCANCGNACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGNGCGCGCCGGTNGCTGCGNCTCAACCCGGCGCGNCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCGAACTTCCTCCTCGGCGTCGCGTCGTGTACTNCAACANCGGCGCCGGGATCAACGCGGTNAACAACGGCATCCCGCAGTGGGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7611#0 CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGC 60 consensus_7611#1 ----------------------------------------------ATGCGGCACG-GGC 13 ********** *** consensus_7611#0 GCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTA 120 consensus_7611#1 GCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGAGCGTNANCGACTA 73 ********************************************** ****** consensus_7611#0 CCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGT 180 consensus_7611#1 CCCGACGGCGAAGCCANCGN--ACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGT 131 *************** * ************************************** consensus_7611#0 CGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCT 240 consensus_7611#1 CGCCTACACCGACGGCTCCGTGGNGCGCGCCG-GTNGCTGCGNCTCAACCCGGCGCGNCT 190 *********************** ******** * ****** ************** ** consensus_7611#0 CGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGC 300 consensus_7611#1 CGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGC 250 ************************************************************ consensus_7611#0 CGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGT 360 consensus_7611#1 GAACTTCCTCCTCGGCGTCGC-GTCGTGTACTNCAACANCGGCGCCGGGATCAACGCGGT 309 ******************* ********** ***** ************** ****** consensus_7611#0 CACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGG 420 consensus_7611#1 NAACAACGGCATCCCGCAGTGGGTGT---------------------------------- 335 * ** ************* ***** consensus_7611#0 CGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGT 480 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGG 540 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAAC 600 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTC 660 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGCCTCGCCGC 720 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGG 780 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCA 840 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGA 900 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCAC 960 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTA 1020 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGA 1080 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACGTCGCCGCCGGCGCCGCCGGCGACATG 1140 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CCGTTCCCGGCGCGCGCGGCACCGGCTGGTGTCGCTGCGCGACACGGCCTACTTCAACAG 1200 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CCACGACACCAGCATGCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTG 1260 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGG 1320 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCA 1380 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATC 1440 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATG 1500 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 AATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTG 1560 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 TTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA 1606 consensus_7611#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||