These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1403 fasta sequence [TTTCTCATCCGCTATTGGGCGCGTGGAGACGGAATGCGGCGGCGGCTCCCTCGGACAGCTAGGGCAGTGGCGGCGCCCTCCCGTGCCTGGAGCAGGGCAGTGGCGGCACCCTCCCATGCCTAGAGCAGGGCAGCAACGATGGAAGGGCCAGGCGGCACCCTCCCGTGCATTGAGAGTTTCATAGTTTGATTGCTCGGTTTTGGTTTTTATTGCGGTAATTAATCATGGTCACTAGATTCTGGTTTGATTGCTCAGTTTTGGTTTTCATGTGATTAGGTAGTAAGCCTAGCATATATCATTGCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAACAAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAGTAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAATAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCATAGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAATAGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAACCACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCACATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAAAAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGGCATAGAACAATTAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTCCTACTATGTAGTATATACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGAGAACTAGTTTTGCCAGATGTCAAGTTATCCTGAGAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAATTGATTGCCTAAAAGGATGGTAAATGCAGCAGGCAGAAGTGGATGGTGCTAAAAGGATTGTAGTTTGATGAATGTAGCCTTCGCTGTTAATCCATACAATGTAGTCTGTACACTCTTAGGAGTATGCAAGGATTGTAGTCTAGATGCTGTAAGTTTGGACCGCATTTTTGGTCAAATTGCAAGGAAACTCATATCGCTATGTAATCTGTACAATGTATTTCTTTTATTTGAAATACATATGGCATGTTGGATGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK066465 [TTTCTCATCCGCTATTGGGCGCGTGGAGACGGAATGCGGCGGCGGCTCCCTCGGACAGCTAGGGCAGTGGCGGCGCCCTCCCGTGCCTGGAGCAGGGCAGTGGCGGCACCCTCCCATGCCTAGAGCAGGGCAGCAACGATGGAAGGGCCAGGCGGCACCCTCCCGTGCATTGAGAGTTTCATAGTTTGATTGCTCGGTTTTGGTTTTTATTGCGGTAATTAATCATGGTCACTAGATTCTGGTTTGATTGCTCAGTTTTGGTTTTCATGTGATTAGGTAGTAAGCCTAGCATATATCATTGCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAACAAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAGTAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAATAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCATAGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAATAGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAACCACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCACATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAAAAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGGCATAGAACAATTAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTCCTACTATGTAGTATATACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGAGAACTAGTTTTGCCAGATGTCAAGTTATCCTGAGAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAATTGATTGCCTAAAAGGATGGTAAATGCAGCAGGCAGAAGTGGATGGTGCTAAAAGGATTGTAGTTTGATGAATGTAGCCTTCGCTGTTAATCCATACAATGTAGTCTGTACACTCTTAGGAGTATGCAAGGATTGTAGTCTAGATGCTGTAAGTTTGGACCGCATTTTTGGTCAAATTGCAAGGAAAC ] [+] EMBL CB660875 [ CGGCGGCTCCCTCGGACAGCTAGGGCAGTGGCGGCGCCCTCCCGTGCCTGGAGCAGGGCAGTGGCGGCACCCTCCCATGCCTAGAGCAGGGCAGCAACGATGGAAGGGCCAGGCGGCACCCTCCCGTGCATTGAGAGTTTCATAGTTTGATTGCTCGGTTTTGGTTTTTATTGCGGTAATTAATCATGGTCACTAGATTCTGGTTTGATTGCTCAGTTTTGGTTTTCATGTGATTAGGTAGTAAGCCTAGCATATATCATTGCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAACAAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAGTAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAATAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCATAGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAATAGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAACCACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCACATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAAAAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAGGCCGAT ] [-] EMBL CB660876 [ CATATATCATGGCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAACAAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAGTAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAATAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCATAGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAATAGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAACCACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCACATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAAAAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGGCATAGAACAATTAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTCCTACTATGTAGTATATACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGAGAACTAGTTTTGCCAGATGTCAAGTTATCCTGAGAACTATTGTAACCTTG ACAGAAT CAAAAGAGGAAAA ] [+] EMBL CF330222 [ TGTTAATCCATACAATGTAGTCTGTACACTCTTAGGAGTATGCAAGGATTGTAGTCTAGATGCTGTAAGTTTGGACCGCATTTTTGGTCAAATTGCAAGGAAACTCATATCGCTATGTAATCTGTACAATGTATTTCTTTTATTTGAAATACATATGGCATGTTGGATGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [TCTTTACACTTGGCAGCTGGCAACTTGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGACATAGAACAATCAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTTCTAATAGTGTATATACTACATAGTAGGAATTACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGACAACTAGTTTTGCCAGATGTCAAGTTATCCTGACAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAA] [+] EMBL CB642936 [TCTTTACACTTGGCAGCTGGCAACTTGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGACATAGAACAATCAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTTCTAATAGTGTATATACTACATAGTAGGAATTACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGACAACTAGTTTTGCCAGATGTCAAGTTATCCTGACAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7614#0 TTTCTCATCCGCTATTGGGCGCGTGGAGACGGAATGCGGCGGCGGCTCCCTCGGACAGCT 60 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 AGGGCAGTGGCGGCGCCCTCCCGTGCCTGGAGCAGGGCAGTGGCGGCACCCTCCCATGCC 120 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 TAGAGCAGGGCAGCAACGATGGAAGGGCCAGGCGGCACCCTCCCGTGCATTGAGAGTTTC 180 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 ATAGTTTGATTGCTCGGTTTTGGTTTTTATTGCGGTAATTAATCATGGTCACTAGATTCT 240 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 GGTTTGATTGCTCAGTTTTGGTTTTCATGTGATTAGGTAGTAAGCCTAGCATATATCATT 300 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 GCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAAC 360 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 AAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAG 420 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 TAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAA 480 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 TAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCAT 540 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 AGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAAT 600 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 AGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAAC 660 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 CACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCAC 720 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 ATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAA 780 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 AAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAG 840 consensus_7614#1 ---------------TCTT--TACACTTGGCAGCTGGCAACTT--------------GAG 29 **** ********************* *** consensus_7614#0 GCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTG 900 consensus_7614#1 GCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTG 89 ************************************************************ consensus_7614#0 GAAGAGCATGAACGAGAGGATGCTGAAGAAGTGGCATAGAACAATTAATGACAAGATAAT 960 consensus_7614#1 GAAGAGCATGAACGAGAGGATGCTGAAGAAGTGACATAGAACAATCAATGACAAGATAAT 149 ********************************* *********** ************** consensus_7614#0 GAATGTAGCCTTTCTTTGTAATTCCTA------------CTATGTAGTATA---TACACT 1005 consensus_7614#1 GAATGTAGCCTTTCTTTGTAATTTCTAATAGTGTATATACTACATAGTAGGAATTACACT 209 *********************** *** *** ***** ****** consensus_7614#0 ATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGAGAACTAGTTTTGCCAGATGT 1065 consensus_7614#1 ATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGACAACTAGTTTTGCCAGATGT 269 **************************************** ******************* consensus_7614#0 CAAGTTATCCTGAGAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAATTGATTGC 1125 consensus_7614#1 CAAGTTATCCTGACAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAA-------- 321 ************* ************************************** consensus_7614#0 CTAAAAGGATGGTAAATGCAGCAGGCAGAAGTGGATGGTGCTAAAAGGATTGTAGTTTGA 1185 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 TGAATGTAGCCTTCGCTGTTAATCCATACAATGTAGTCTGTACACTCTTAGGAGTATGCA 1245 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 AGGATTGTAGTCTAGATGCTGTAAGTTTGGACCGCATTTTTGGTCAAATTGCAAGGAAAC 1305 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 TCATATCGCTATGTAATCTGTACAATGTATTTCTTTTATTTGAAATACATATGGCATGTT 1365 consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 GGATGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1403 consensus_7614#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||