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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7620#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1674 fasta sequence
[CACAATATCTCGTCACGGTCTGGGCCTCTGGGGCGCCATCCACCGGCGATCTCGGCCGCCGCCCGCCAATGGCCGCCGCCGCAGCGGCTAAACCCTTCCCGTTCCTCGCCGCCGCCGCCGCCGCCGCCTCACGGTCCCCACTTCCCCTCTCACCCGCGGCACGGCCGGCCCCAGCCTCGTCCCGCTTCGGCGACCGTCGCGCTCCCGCGGTGGTCGC-TGCCACTGCCCGCCGCCGCGGCGCCCATGGGGTTCGAGCTCTCCGGCCCCTTCTCCTTCCCCGCGCCTCCGCTTCTCCCTCCGCGAAGACCGCGGCAGGAGGCATGTCTGACCCGGAGCTAAGGATGGTGCTCGAGCTCGCCACCGACGAGGAGCTGATGGAGTTCGAGGAGATCCTATACGGTACCAGCTATTTTAGCCCACTGCTAAAATCAATTGCAAAAAGACCCAATTCAGATTATGTCGATGCTTTGGATGATATTGAGGAGAGAGATATTTTCATCTCAAAATTAGAGTCGAGGTTCCTGTATCTTGCTGCCGATGCCCGCTCAATCATAAGGGGATCTCGACCATCATACAGGAATGTCTTACTTGGAGTGAGAAGAGAACTTGGTGTTCGCTGCTCTAGTAAATTATGCACGGCAGACCTTGAGGCAGAAATATTTCTTCACCTGCTAGATGAATATTCGAGAAATCTCCAAAAGACAACTCTAGCCTTGGAGTTAACAAGTGGATGGTGCTTACTGATTCTGCTTGGAAGATTGGAGCAAAAGGACTAGAAAGTGCATTCTTGAAGGGTGGTAGTGCATTGACTCTGAAAATGATCTATGAATCGGTAGGTATACTGTTTTATGAAGTTAGATTGATTTTACTTTTTCTTACAGCATCATTAGACATTAATGGACTTATCATCATGGTAGTTAGCCAAGAGACTATCTGGAAAGCTGCTCATGGAGGCTGGTAAATATGAGATAAAGAAAGAACTTCTAAAGCAGGGTGGACGATTAGCTGCTGTTAATCTGGAGTCTCGAGCTGGTTTGCTTGCAGCTAGGCAGGGTTTGGCACGTGCAGCATCTAGATATGTTGGTCTTAGGAGTGTCATGACGTTTCTTGGACCAATAATGTGGGGGACACTCTTGGCTGACATTGTGATCCAAATGCTTGGGACAGACTATGCTAGAATTGTGCAGGCAATCTATGCTTTTGCTCAGATTCGGCTGACTAGGACATCTTACATAGAATCTCATGAAGAATAATCAACAGTGGGACATTTCTGGTCTGGACTAACAGGGCATTCTGGGCCCATAGTGTACATTCTGATCATGCAGAACATTTTTGGTTGAGTGCTGGCGCAATTCTCCCAAGAGGACTCGAGGACAGTAAGTTCATACTTTCACAGAAGTTGTGCAGCTGATGTAAATGCATAGAAGTTAGATGACAGAACAATTGATAGATGCTAGGTAGGATAGATGGTACAGATGACACACAAATCATCTATGCTTTTGAATTCTCCAAGGTTTAAGGCTGCTGCTTAAGTGAGAGCTTGTTATACATTCCAGGAAAAATTAATTTACTGCCACTATAGAATGGTGTAATTGTATTTAAGAAATAGCTCACAATGACCATTAGGGCCACCTACTCTCTAAACGCGGTAGTTGTGAATGAATATACATCCAC]
[+] EMBL AK109793 [CACAATATCTCGTCACGGTCTGGGCCTCTGGGGCGCCATCCACCGGCGATCTCGGCCGCCGCCCGCCAATGGCCGCCGCCGCAGCGGCTAAACCCTTCCCGTTCCTCGCCGCCGCCGCCGCCGCCGCCTCACGGTCCCCACTTCCCCTCTCACCCGCGGCACGGCCGGCCCCAGCCTCGTCCCGCTTCGGCGACCGTCGCGCTCCCGCGGTGGTCGC TGCCACTGCCCGCCGCCGCGGCGCCCATGGGGTTCGAGCTCTCCGGCCCCTTCTCCTTCCCCGCGCCTCCGCTTCTCCCTCCGCGAAGACCGCGGCAGGAGGCATGTCTGACCCGGAGCTAAGGATGGTGCTCGAGCTCGCCACCGACGAGGAGCTGATGGAGTTCGAGGAGATCCTATACGGTACCAGCTATTTTAGCCCACTGCTAAAATCAATTGCAAAAAGACCCAATTCAGATTATGTCGATGCTTTGGATGATATTGAGGAGAGAGATATTTTCATCTCAAAATTAGAGTCGAGGTTCCTGTATCTTGCTGCCGATGCCCGCTCAATCATAAGGGGATCTCGACCATCATACAGGAATGTCTTACTTGGAGTGAGAAGAGAACTTGGTGTTCGCTGCTCTAGTAAATTATGCACGGCAGACCTTGAGGCAGAAATATTTCTTCACCTGCTAGATGAATATTCGAGAAATCTCCAAAAGACAACTCTAGCCTTGGAGTTAACAAGTGGATGGTGCTTACTGATTCTGCTTGGAAGATTGGAGCAAAAGGACTAGAAAGTGCATTCTTGAAGGGTGGTAGTGCATTGACTCTGAAAATGATCTATGAATCGGTAGGTATACTGTTTTATGAAGTTAGATTGATTTTACTTTTTCTTACAGCATCATTAGACATTAATGGACTTATCATCATGGTAGTTAGCCAAGAGACTATCTGGAAAGCTGCTCATGGAGGCTGGTAAATATGAGATAAAGAAAGAACTTCTAAAGCAGGGTGGACGATTAGCTGCTGTTAATCTGGAGTCTCGAGCTGGTTTGCTTGCAGCTAGGCAGGGTTTGGCACGTGCAGCATCTAGATATGTTGGTCTTAGGAGTGTCATGACGTTTCTTGGACCAATAATGTGGGGGACACTCTTGGCTGACATTGTGATCCAAATGCTTGGGACAGACTATGCTAGAATTGTGCAGGCAATCTATGCTTTTGCTCAGATTCGGCTGACTAGGACATCTTACATAGAATCTCATGAAGAATAATCAACAGTGGGACATTTCTGGTCTGGACTAACAGGGCATTCTGGGCCCATAGTGTACATTCTGATCATGCAGAACATTTTTGGTTGAGTGCTGGCGCAATTCTCCCAAGAGGACTCGAGGACAGTAAGTTCATACTTTCACAGAAGTTGTGCAGCTGATGTAAATGCATAGAAGTTAGATGACAGAACAATTGATAGATGCTAGGTAGGATAGATGGTACAGATGACACACAAATCATCTATGCTTTTGAATTCTCCAAGGTTTAAGGCTGCTGCTTAAGTGAGAGCTTGTTATACATTCCAGGAAAAATTAATTTACTGCCACTATAGAATGGTGTAATTGTATTTAAGAAATAGCTCACAATGACCATTAGGGCCACCTACTCTCTAAACGCGGTAGTTGTGAATGAATATACATCCAC]
[+] EMBL CB655072 [ GGCCCCCTTGGGCGCCATCCACCGGCGATCTCGGCCGCCGCCCGCCAATGGCCGCCGCCGCAGCGGCTAAACCCTTCCCGTTCCTCGCCGCCGCCGCCGCCGCCGCCTCACGGTCCCCACTTCCCCTCTCACCCGCGGCACGGCCGGCCCCAGCCTCGTCCCGCTTCGGCGACCGTCGCGCTCCCGCGGTGGTCGC TGCCACTGCCCGCCGCCGCGGCGCCCATGGGGTTCGAGCTCTCCGGCCCCTTCTCCTTCCCCGCGCCTCCGCTTCTCCCTCCGCGAAGACCGCGGCAGGAGGCATGTCTGACCCGGAGCTAAGGATGGTGCTCGAGCTCGCCACCGACGAGGAGCTGATGGAGTTCGAGGAGATCCTATACGGTACCAGCTATTTTAGCCCACTGCTAAAATCAATTGCAAAAAGACCCAATTCAGATTATGTCGATGCTTTGGATGATATTGAGGAGAGAGATATTTTCATCTCAAAATTAGAGTCGAGGTTCCTGTATCTTGCTGCCGATGCCCGCTCAATCATAAGGGGATCTCGACCATCATACAGGAATGTCTTACTTGGAGTGAGAAGAGAACTTGGTGTTCGCTGCTCTAGTAAATTATGCACGGCAGACCTTGAGGCAGAAATATTTCTTCACCTGCTAGATGAATATTCGAGAAATCTCCAAAAGACAACTCTAGCCTTGGAGTTAACAAGTGGATGGTGCTTACTGATTCTGCTTGGAAGATTGGAGCAAAAGGACTAGAAAG ]
[+] EMBL CB655180 [ TGGTCGCGTGCCACTGCCCGCCGCCGCGGCGCCCATGGGGTTCGAGCTCTCCGGCCCCTTCTCCTTCCCCGCGCCTCCGCTTCTCCCTCCGCGAAGACCGCGGCAGGAGGCATGTCTGACCCGGAGCTAAGGATGGTGCTCGAGCTCGCCACCGACGAGGAGCTGATGGAGTTCGAGGAGATCCTATACGGTACCAGCTATTTTAGCCCACTGCTAAAATCAATTGCAAAAAGACCCAATTCAGATTATGTCGATGCTTTGGATGATATTGAGGAGAGAGATATTTTCATCTCAAAATTAGAGTCGAGGTTCCTGTATCTTGCTGCCGATGCCCGCTCAATCATAAGGGGATCTCGACCATCATACAGGAATGTCTTACTTGGAGTGAGAAGAGAACTTGGTGTTCGCTGCTCTAGTAAATTATGCACGGCAGACCTTGAGGCAGAAATATTTCTTCACCTGCTAGATGAATATTCGAGAAATCTCCAAAAGACAACTCTAGCCTTGGAGTTAACAAGTGGATGGTGCTTACTGATTCTGCTTGGAAGATTGGAGCAAAAGGACTAGAAAGTGCATTCTTGAAGGGTGGTAGTGCATTGACTCTGA ]
consensusID : consensus_7620#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 797 fasta sequence
[TTGGAGCAAAAGGACTAGAAAGTGCATTCTTGAAGGGTGGTAGTGCATTGACTCTGAAAATGATCTATGAATCGCCAAGAGACTATCTGGAAAGCTGCTCATGGAGGCTGGTAAATATGAGATAAAGAAAGAACTTCTAAAGCAGGGTGGACGATTAGCTGCTGTTAATCTGGAGTCTCGAGCTGGTTTGCTTGCAGCTAGGCAGGGTTTGGCACGTGCAGCATCTAGATATGTTGGTCTTAGGAGTGTCATGACGTTTCTTGGACCAATAATGTGGGGGACACTCTTGGCTGACATTGTGATCCAAATGCTTGGGACAGACTATGCTAGAATTGTGCAGGCAATCTATGCTTTTGCTCAGATTCGGCTGACTAGGACATCTTACATAGAATCTCATGAAGAATAATCAACAGTGGGACATTTCTGGTCTGGACTAACAGGGCATTCTGGGCCCATAGTGTACATTCTGATCATGCAGAACATTTTTGGTTGAGTGCTGGCGCAATTCTCCCAAGAGGACTCGAGGACAGTAAGTTCATACTTTCACAGAAGTTGTGCAGCTGATGTAAATGCATAGAAGTTAGATGACAGAACAATTGATAGATGCTAGGTAGGATAGATGGTACAGATGACACACAAATCATCTATGCTTTTGAATTCTCCAAGGTTTAAGGCTGCTGCTTAAGTGAGAGCTTGTTAGACATTCCAGGAAAAATTAATTTACTGCCACTAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB655073 [TTGGAGCAAAAGGACTAGAAAGTGCATTCTTGAAGGGTGGTAGTGCATTGACTCTGAAAATGATCTATGAATCGCCAAGAGACTATCTGGAAAGCTGCTCATGGAGGCTGGTAAATATGAGATAAAGAAAGAACTTCTAAAGCAGGGTGGACGATTAGCTGCTGTTAATCTGGAGTCTCGAGCTGGTTTGCTTGCAGCTAGGCAGGGTTTGGCACGTGCAGCATCTAGATATGTTGGTCTTAGGAGTGTCATGACGTTTCTTGGACCAATAATGTGGGGGACACTCTTGGCTGACATTGTGATCCAAATGCTTGGGACAGACTATGCTAGAATTGTGCAGGCAATCTATGCTTTTGCTCAGATTCGGCTGACTAGGACATCTTACATAGAATCTCATGAAGAATAATCAACAGTGGGACATTTCTGGTCTGGACTAACAGGGCATTCTGGGCCCATAGTGTACATTCTGATCATGCAGAACATTTTTGGTTGAGTGCTGGCGCAATTCTCCCAAGAGGACTCGAGGACAGTAAGTTCATACTTTCACAGAAGTTGTGCAGCTGATGTAAATGCATAGAAGTTAGATGACAGAACAATTGATAGATGCTAGGTAGGATAGATGGTACAGATGACACACAAATCATCTATGCTTTTGAATTCTCCAAGGTTTAAGGCTGCTGCTTAAGTGAGAGCTTGTTAGACATTCCAGGAAAAATTAATTTACTGCCACTAAAAAAAAAG ]
[+] EMBL CF330135 [ gagtagaaaTTTAATGCTGCTGCTTAAGTGAGAGCTTGTTATACATTCCAGGAAAAATTAATTTACTGCCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7620#0 CACAATATCTCGTCACGGTCTGGGCCTCTGGGGCGCCATCCACCGGCGATCTCGGCCGCC 60
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 GCCCGCCAATGGCCGCCGCCGCAGCGGCTAAACCCTTCCCGTTCCTCGCCGCCGCCGCCG 120
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 CCGCCGCCTCACGGTCCCCACTTCCCCTCTCACCCGCGGCACGGCCGGCCCCAGCCTCGT 180
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 CCCGCTTCGGCGACCGTCGCGCTCCCGCGGTGGTCGCTGCCACTGCCCGCCGCCGCGGCG 240
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 CCCATGGGGTTCGAGCTCTCCGGCCCCTTCTCCTTCCCCGCGCCTCCGCTTCTCCCTCCG 300
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 CGAAGACCGCGGCAGGAGGCATGTCTGACCCGGAGCTAAGGATGGTGCTCGAGCTCGCCA 360
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 CCGACGAGGAGCTGATGGAGTTCGAGGAGATCCTATACGGTACCAGCTATTTTAGCCCAC 420
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 TGCTAAAATCAATTGCAAAAAGACCCAATTCAGATTATGTCGATGCTTTGGATGATATTG 480
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 AGGAGAGAGATATTTTCATCTCAAAATTAGAGTCGAGGTTCCTGTATCTTGCTGCCGATG 540
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 CCCGCTCAATCATAAGGGGATCTCGACCATCATACAGGAATGTCTTACTTGGAGTGAGAA 600
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 GAGAACTTGGTGTTCGCTGCTCTAGTAAATTATGCACGGCAGACCTTGAGGCAGAAATAT 660
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 TTCTTCACCTGCTAGATGAATATTCGAGAAATCTCCAAAAGACAACTCTAGCCTTGGAGT 720
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 TAACAAGTGGATGGTGCTTACTGATTCTGCTTGGAAGATTGGAGCAAAAGGACTAGAAAG 780
consensus_7620#1 --------------------------------------TTGGAGCAAAAGGACTAGAAAG 22
**********************
consensus_7620#0 TGCATTCTTGAAGGGTGGTAGTGCATTGACTCTGAAAATGATCTATGAATCGGTAGGTAT 840
consensus_7620#1 TGCATTCTTGAAGGGTGGTAGTGCATTGACTCTGAAAATGATCTATGAATCG-------- 74
****************************************************
consensus_7620#0 ACTGTTTTATGAAGTTAGATTGATTTTACTTTTTCTTACAGCATCATTAGACATTAATGG 900
consensus_7620#1 ------------------------------------------------------------
consensus_7620#0 ACTTATCATCATGGTAGTTAGCCAAGAGACTATCTGGAAAGCTGCTCATGGAGGCTGGTA 960
consensus_7620#1 ---------------------CCAAGAGACTATCTGGAAAGCTGCTCATGGAGGCTGGTA 113
***************************************
consensus_7620#0 AATATGAGATAAAGAAAGAACTTCTAAAGCAGGGTGGACGATTAGCTGCTGTTAATCTGG 1020
consensus_7620#1 AATATGAGATAAAGAAAGAACTTCTAAAGCAGGGTGGACGATTAGCTGCTGTTAATCTGG 173
************************************************************
consensus_7620#0 AGTCTCGAGCTGGTTTGCTTGCAGCTAGGCAGGGTTTGGCACGTGCAGCATCTAGATATG 1080
consensus_7620#1 AGTCTCGAGCTGGTTTGCTTGCAGCTAGGCAGGGTTTGGCACGTGCAGCATCTAGATATG 233
************************************************************
consensus_7620#0 TTGGTCTTAGGAGTGTCATGACGTTTCTTGGACCAATAATGTGGGGGACACTCTTGGCTG 1140
consensus_7620#1 TTGGTCTTAGGAGTGTCATGACGTTTCTTGGACCAATAATGTGGGGGACACTCTTGGCTG 293
************************************************************
consensus_7620#0 ACATTGTGATCCAAATGCTTGGGACAGACTATGCTAGAATTGTGCAGGCAATCTATGCTT 1200
consensus_7620#1 ACATTGTGATCCAAATGCTTGGGACAGACTATGCTAGAATTGTGCAGGCAATCTATGCTT 353
************************************************************
consensus_7620#0 TTGCTCAGATTCGGCTGACTAGGACATCTTACATAGAATCTCATGAAGAATAATCAACAG 1260
consensus_7620#1 TTGCTCAGATTCGGCTGACTAGGACATCTTACATAGAATCTCATGAAGAATAATCAACAG 413
************************************************************
consensus_7620#0 TGGGACATTTCTGGTCTGGACTAACAGGGCATTCTGGGCCCATAGTGTACATTCTGATCA 1320
consensus_7620#1 TGGGACATTTCTGGTCTGGACTAACAGGGCATTCTGGGCCCATAGTGTACATTCTGATCA 473
************************************************************
consensus_7620#0 TGCAGAACATTTTTGGTTGAGTGCTGGCGCAATTCTCCCAAGAGGACTCGAGGACAGTAA 1380
consensus_7620#1 TGCAGAACATTTTTGGTTGAGTGCTGGCGCAATTCTCCCAAGAGGACTCGAGGACAGTAA 533
************************************************************
consensus_7620#0 GTTCATACTTTCACAGAAGTTGTGCAGCTGATGTAAATGCATAGAAGTTAGATGACAGAA 1440
consensus_7620#1 GTTCATACTTTCACAGAAGTTGTGCAGCTGATGTAAATGCATAGAAGTTAGATGACAGAA 593
************************************************************
consensus_7620#0 CAATTGATAGATGCTAGGTAGGATAGATGGTACAGATGACACACAAATCATCTATGCTTT 1500
consensus_7620#1 CAATTGATAGATGCTAGGTAGGATAGATGGTACAGATGACACACAAATCATCTATGCTTT 653
************************************************************
consensus_7620#0 TGAATTCTCCAAGGTTTAAGGCTGCTGCTTAAGTGAGAGCTTGTTATACATTCCAGGAAA 1560
consensus_7620#1 TGAATTCTCCAAGGTTTAAGGCTGCTGCTTAAGTGAGAGCTTGTTAGACATTCCAGGAAA 713
********************************************** *************
consensus_7620#0 AATTAATTTACTGCCACTATAGAATGGTGTAATTGTATTTAAGAAATAGCTCACAATGAC 1620
consensus_7620#1 AATTAATTTACTGCCACTAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 773
******************* * ** ** * ** *** * * ** *
consensus_7620#0 CATTAGGGCCACCTACTCTCTAAACGCGGTAGTTGTGAATGAATATACATCCAC 1674
consensus_7620#1 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 797
* * * * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||