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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1516 fasta sequence
[AATGACATCTCTTCTCATCATCTTATTCCCTTCTACTTAAATAAAAAAAGAAGAAGAAAAAACCCATCATTGCCTCCATCTTCTGGTCAAAGGATGACATCAATCCCTATCATCTCATCCCCTCCTATATAAAGAACCCAGTACTACCTTCATCTCTGACTCATAGCAATATACATACATCGTATCACAGGGAAATAATCAACATAATCAGCAACAATGGGAGCCAAGAAGCATACCTTGCAAGTGCTTCCATGGCTACTGCTCTTTGCGCAGCACACTGCAGCCAGTGCCTGCGACTGTGCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATTGCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATGGCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTCATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATCTCCATGCCTCAAAAGGGGTGGTGGGGATAGGAATCCCTTCCCCTTTGCGGGCCTTGTTTCAATGTCTGCTGCAGTGTCCACAATGGTGGTGGACTCATTGGCTGCTGGATACTATCACCGGTCTCAATTCAGGAAGGCACGCCCAGTTGACAACATCAACGTACACAAGCATGCTGGAGACGAGAGGGCTGAACATGCACAACACATAAATGCGCACACACATGGAGGACATACACATTCACATGGTGATATAGTGGTCTGTGGCTCACCAGAGGAGGGTTCAGTAGCTGAATCAATTCGACATAAGGTAGTATCTCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGTAAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCTAGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGGAGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGCAACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCTTGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAGAATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTATCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAAAACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACTTAACTTGTTCTTAAAAA]
[+] EMBL AK069804 [AATGACATCTCTTCTCATCATCTTATTCCCTTCTACTTAAATAAAAAAAGAAGAAGAAAAAACCCATCATTGCCTCCATCTTCTGGTCAAAGGATGACATCAATCCCTATCATCTCATCCCCTCCTATATAAAGAACCCAGTACTACCTTCATCTCTGACTCATAGCAATATACATACATCGTATCACAGGGAAATAATCAACATAATCAGCAACAATGGGAGCCAAGAAGCATACCTTGCAAGTGCTTCCATGGCTACTGCTCTTTGCGCAGCACACTGCAGCCAGTGCCTGCGACTGTGCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATTGCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATGGCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTCATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATCTCCATGCCTCAAAAGGGGTGGTGGGGATAGGAATCCCTTCCCCTTTGCGGGCCTTGTTTCAATGTCTGCTGCAGTGTCCACAATGGTGGTGGACTCATTGGCTGCTGGATACTATCACCGGTCTCAATTCAGGAAGGCACGCCCAGTTGACAACATCAACGTACACAAGCATGCTGGAGACGAGAGGGCTGAACATGCACAACACATAAATGCGCACACACATGGAGGACATACACATTCACATGGTGATATAGTGGTCTGTGGCTCACCAGAGGAGGGTTCAGTAGCTGAATCAATTCGACATAAGGTAGTATCTCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGTAAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCTAGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGGAGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGCAACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCTTGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAGAATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTATCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAAAACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACTTA ]
[+] EMBL AY323915 [ cgACATCGTATCACAGGGAAATAATCAACATAATCAGCAACAATGGGAGCCAAGAAGCATACCTTGCAAGTGCTTCCATGGCTACTGCTCTTTGCGCAGCACACTGCAGCCAGTGCCTGCGACTGTGCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATTGCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATGGCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTCATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATCTCCATGCCTCAAAAGGGGTGGTGGGGATAGGAATCCCTTCCCCTTTGCGGGCCTTGTTTCAATGTCTGCTGCAGTGTCCACAATGGTGGTGGACTCATTGGCTGCTGGATACTATCACCGGTCTCAATTCAGGAAGGCACGCCCAGTTGACAACATCAACGTACACAAGCATGCTGGAGACGAGAGGGCTGAACATGCACAACACATAAATGCGCACACACATGGAGGACATACACATTCACATGGTGATATAGTGGTCTGTGGCTCACCAGAGGAGGGTTCAGTAGCTGAATCAATTCGACATAAGGTAGTATCTCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGTAAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCTAGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGGAGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGCAACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCTTGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAGAATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTATCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAAAACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACTTAACTTGTTCTTAAAAA]
[+] EMBL AU030756 [ CANANGGNAATAATCAACATAATCAGCAACAATGGGAGNCAAGAAGCATACCTTGCAANTGCTTCCATGGCTACTGCTCTTTGCGCA NACACTGCAGCCAGTGCCTGCGACTGTGCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATTGCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATGGCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTCATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATC ]
[+] EMBL AU030757 [ GGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGTAAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCTAGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGGAGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGCAACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCTTGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAGAATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTATCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAAAACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACTTAACTTGTTCTTAAAA ]
consensusID : consensus_7624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[ACGAGACAAGGGGATGAGAAGTTACCTATTCAATGGATATGTCTGATAATCTGCACTTCAGGGGAACTTTTCCCACTAAACTCAGAATTAACTCCATTTCATTGATTGCCAACTAAATAAATGCTTCAGAAAACCAGATAGGCCCTCTTGCAATAACCACATGAATTTTTGGCCATGCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGTATGTCCAAGTACTGTAACCTAGATAGTAGACACCTGATGATAAATATCTAACTTGTTGTTTCGACTTTTGACAAAAGATAGCAAAATGCTTGCTCAAAAAGGCTTAACATCAACATGCTCATACGCCAGTGGAAGGGCCCTTCCGCAGAAGGGGAGAGAAAAAAAGAAATAAGGCAAAGACATACAAAGTTGGAAAATAAAAGGCACAATAGCAACGAGACACATTGCAAGCATGAAAAGTTATTAGCCATTTTCTTCAAGAAACAAAGTA]
[+] EMBL CA764428 [ACGAGACAAGGGGATGAGAAGTTACCTATTCAATGGATATGTCTGATAATCTGCACTTCAGGGGAACTTTTCCCACTAAACTCAGAATTAACTCCATTTCATTGATTGCCAACTAAATAAATGCTTCAGAAAACCAGATAGGCCCTCTTGCAATAACCACATGAATTTTTGGCCATGCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGTATGTCCAAGTACTGTAACCTAGATAGTAGACACCTGATGATAAATATCTAACTTGTTGTTTCGACTTTTGACAAAAGATAGCAAAATGCTTGCTCAAAAAGGCTTAACATCAACATGCTCATACGCCAGTGGAAGGGCCCTTCCGCAGAAGGGGAGAGAAAAAAAGAAATAAGGCAAAGACATACAAAGTTGGAAAATAAAAGGCACAATAGCAACGAGACACATTGCAAGCATGAAAAGTTATTAGCCATTTTCTTCAAGAAACAAAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7624#0 AATGACATCTCTTCTCATCATCTTATTCCCTTCTACTTAAATAAAAAAAGAAGAAGAAAA 60
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 AACCCATCATTGCCTCCATCTTCTGGTCAAAGGATGACATCAATCCCTATCATCTCATCC 120
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 CCTCCTATATAAAGAACCCAGTACTACCTTCATCTCTGACTCATAGCAATATACATACAT 180
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 CGTATCACAGGGAAATAATCAACATAATCAGCAACAATGGGAGCCAAGAAGCATACCTTG 240
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 CAAGTGCTTCCATGGCTACTGCTCTTTGCGCAGCACACTGCAGCCAGTGCCTGCGACTGT 300
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 GCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATT 360
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 GCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATG 420
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 GCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTC 480
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 ATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATCTCCA 540
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 TGCCTCAAAAGGGGTGGTGGGGATAGGAATCCCTTCCCCTTTGCGGGCCTTGTTTCAATG 600
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 TCTGCTGCAGTGTCCACAATGGTGGTGGACTCATTGGCTGCTGGATACTATCACCGGTCT 660
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 CAATTCAGGAAGGCACGCCCAGTTGACAACATCAACGTACACAAGC-ATGCTGGAGACGA 719
consensus_7624#1 -ACGAGACAAGGGGATGAGAAGTTACCTAT-TCAATGGATATGTCTGATAATCTGCACTT 58
* * * ** * * **** * * **** * * * ** * **
consensus_7624#0 GAGGGCTGAACATGCACAACACATAAATGCGCACACACATGGAGGACATACACATTCACA 779
consensus_7624#1 CAGGG--GAACTTTTCCCAC---TAAACTCAGAATTAACTCCATTTCATTGATTGCCAAC 113
**** **** * * ** **** * * * * * *** * **
consensus_7624#0 TGGTGATATAGTGGTCTGTGGCTCACCAGAGGAGGGTTCAGTAGCTGAATCAATTCGACA 839
consensus_7624#1 TAAATAAATG-----CTTCAGAAAACCAGAT-AGGCCCTCTTGCAATAACCACATGAATT 167
* * ** ** * ****** *** * ** ** * *
consensus_7624#0 TAAGGTAGTATCTCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGT 899
consensus_7624#1 TTTGGCCATG---CAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGT 224
* ** * ***********************************************
consensus_7624#0 ATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTT 959
consensus_7624#1 ATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTT 284
************************************************************
consensus_7624#0 CCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGT 1019
consensus_7624#1 CCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGT--ATGTCCAAGT 342
*********************************************** ** * * **
consensus_7624#0 AAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCT 1079
consensus_7624#1 A-------CTGTAACCTAGATAGTAG--------------ACACCTGATGATAAATATCT 381
* * ** * * * ** ****** * * **
consensus_7624#0 AGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGG 1139
consensus_7624#1 A--ACTTGTTGTTTCGACTTTTGACAAAA--GATAGCA-AAATGCTT-----GCTCAAAA 431
* * *** **** * **** ***** ** *** * * * **
consensus_7624#0 AGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGC 1199
consensus_7624#1 AGGCTTAACATCAACAT--GCTCATACGCCAGTGGAAGGGCCCTTCCGCAGAAGGGGAGA 489
** *** * *** * * ** * * * * ** * **
consensus_7624#0 AACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCT 1259
consensus_7624#1 GAAAAAAAGAAATAAGGCAAAGACATACAA-AGTTGGAAAATAAAAGGCACAATAGCAAC 548
* * * ***** * *** * * * * * ** * * ** *
consensus_7624#0 TGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAG 1319
consensus_7624#1 GAGACACATTGCAAGCA-TGAAAAGTTATTAGCCATTTTCTTCAAGAAACAAAGTA---- 603
** * * * ** * * * * * ** * * * * * *
consensus_7624#0 AATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTA 1379
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 TCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAA 1439
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 AACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACT 1499
consensus_7624#1 ------------------------------------------------------------
consensus_7624#0 TAACTTGTTCTTAAAAA 1516
consensus_7624#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||