These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 902 fasta sequence [TTTTCACCTCGCCGTCCCACTCCCACCCACGCCGCCGCCACCGCCGCCGCCGCCGCCGCTTCACTCGCCGGAGCGCCATCTCTAGCCGCCGCCGCCGTCCTCCCCCTGAGAAAGCGTCGATTCCGTCCGGGGGTGGGCAGCGGTGGGACTCGTATCCGGACGGCCGCAGATTCGTTGAGCGACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGAAAATGGCAAGCAAAGCAGGTGGTGACGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAACATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAGTGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAGAATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCGCAAC-AAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAAGCACTGGAGAAGAAAAAGAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCAACGCTGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCCTGCTGGCCAGTGAAGCAAAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTTTGCTAGATGTCAACTGATTTCGGTCTCTCTTTCTATCTGTGTGTGAAGTATACTACTATTCTTCTGTGGAACCGTGGAATCCGTTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAACTTCGGTCATAACTGCAGGTTTTGTGCAGGTATTCTAGGTGA] [+] EMBL AK059656 [TTTTCACCTCGCCGTCCCACTCCCACCCACGCCGCCGCCACCGCCGCCGCCGCCGCCGCTTCACTCGCCGGAGCGCCATCTCTAGCCGCCGCCGCCGTCCTCCCCCTGAGAAAGCGTCGATTCCGTCCGGGGGTGGGCAGCGGTGGGACTCGTATCCGGACGGCCGCAGATTCGTTGAGCGACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGAAAATGGCAAGCAAAGCAGGTGGTGACGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAACATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAGTGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAGAATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCGCAAC AAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAAGCACTGGAGAAGAAAAAGAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCAACGCTGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCCTGCTGGCCAGTGAAGCAAAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTTTGCTAGATGTCAACTGATTTCGGTCTCTCTTTCTATCTGTGTGTGAAGTATACTACTATTCTTCTGTGGAACCGTGGAATCCGTTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAACTTCGGTCATAACTGCAGGTTTTGTGCAGGTATTCTAGGTGA] [+] EMBL AU162349 [ CCCACNCCCACCCACGCCGCCGCCACCGCCGCCGCCGCCGCCGCTTCACTCGCCGGAGCGCCATCTCTAGCCGCCGCCGCCGTCCTCCCCCTGAGAAAGCGTCGATTCCGTCCGGGGGTGGGCAGCGGTGGGACTCGTATCCGGACGGCCGCAGATTCGTTGAGCGACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGAAAATGGCAAGCAAAGCAGGTGGTGACGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAACATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAGTGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAGAATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCGCAACAAAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAA ] [+] EMBL AU031334 [ CAGATTCGTTGA CCACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGANAATGGCAAGCAAAGCAGGTGGTGCCGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAACATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAGTGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAGAATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCGCAAC AAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAAGCACTGGAGAAGAAAAAGAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCAACGCTGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCCTGCTGGCCAGTGAAGCAAAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTTTGCTAGATGTCAACTGATTTCGGTCTCTCTTTCTATCTGTGTGTGAAGTATACTACTATTCTTCTGTGGAACCGTGGAATCCGTTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAAaaa ] consensusID : consensus_7628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [GGTCCTCGCTGGCCCGTGAAGCCCATAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTGTGCTGAGATGTCACACTGAGTTTCGGTCTCTGCTTGTCTATCTCGTGGTGTGGAAGTATACCTGACTATTTCTTTCTGTGGGAACCCACTGGAATCCCTGTCCCACTGTACCATTGAATGGCTATCTGGGCTATGGCTAGTTGATAACTTCGGTCATAAAAAAAAAA] [+] EMBL BI805251 [GGTCCTCGCTGGCCCGTGAAGCCCATAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATGAAAGTTAGGTTGCTCTGTGCTGAGATGTCACACTGAGTTTCGGTCTCTGCTTGTCTATCTCGTGGTGTGGAAGTATACCTGACTATTTCTTTCTGTGGGAACCCACTGGAATCCCTGTCCCACTGTACCATTGAATGGCTATCTGGGCTATGGCTAGTTGATAACTTCGGTCATAAAAAAAAAA] consensusID : consensus_7628#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 132 fasta sequence [ACTATCCTTCTGTGGAACCGTGGAATCCGCTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAACTTCGGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF329642 [ACTATCCTTCTGTGGAACCGTGGAATCCGCTCCATGTACAATTGAATGCTATCTGGCTATGCTAGTTGATAACTTCGGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7628#0 TTTTCACCTCGCCGTCCCACTCCCACCCACGCCGCCGCCACCGCCGCCGCCGCCGCCGCT 60 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 TCACTCGCCGGAGCGCCATCTCTAGCCGCCGCCGCCGTCCTCCCCCTGAGAAAGCGTCGA 120 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 TTCCGTCCGGGGGTGGGCAGCGGTGGGACTCGTATCCGGACGGCCGCAGATTCGTTGAGC 180 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 GACCCGCGCTGCTGGTTTTAGTCTTGTTGGCATCCTTCTGTTAAGGAAAATGGCAAGCAA 240 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 AGCAGGTGGTGACGGCAAAGAAGCCATCAATGAGCAAATAATTGCAAACACTTATGGGAA 300 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 CATGCGGTCTGAAATGACTCAACTTTACACCAAGATTACAGAATTAGAGATGGAAGTCAG 360 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 TGAACACTCTCTTGTGATTGGCGCAATCGAGCCACTGGATCACTCAAGGCGCTGCTACAG 420 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 AATGGTTGGTGGCGTCCTGGTTGAAAGGACCATCAGGGAAGTCTTGCCTGCGGTGCATCG 480 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 CAACAAGGAGGGCCTTGAAGAGGTAATCGCTCGCATGCATGAAGCACTGGAGAAGAAAAA 540 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 GAAGGAGATCACCGAGTTTGAGCTGAAGTACAAGATCAGGATCCGGAAGGCGGACAGCAA 600 consensus_7628#1 ------------------------------------------------------------ consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 CGCTGATGAGGAAGAAGGCAGCAAGAAGGAAGGGTCTGCTCAGGGTGTTCTTGTTGGTCC 660 consensus_7628#1 -------------------------------------------------------GGTCC 5 consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 T-GCTGGCCAGTGAAGC--AAAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATG 717 consensus_7628#1 TCGCTGGCCCGTGAAGCCCATAATGTCAAGCTTGCATACTGGTTTTTCCTAGAGATTATG 65 consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 AAAGTTAGGTTGCTCTTTGCT-AGATGTCA-ACTGA-TTTCGGTCTCTCTTT--CTATCT 772 consensus_7628#1 AAAGTTAGGTTGCTCTGTGCTGAGATGTCACACTGAGTTTCGGTCTCTGCTTGTCTATCT 125 consensus_7628#2 ------------------------------------------------------------ consensus_7628#0 -GTG-TGTG-AAGTATACT--ACTATTC--TTCTGTGGAACCG---TGGAATCC--GTTC 820 consensus_7628#1 CGTGGTGTGGAAGTATACCTGACTATTTCTTTCTGTGGGAACCCACTGGAATCCCTGTCC 185 consensus_7628#2 ---------------------ACTATCC--TTCTGTGGAACCG---TGGAATCC--GCTC 32 ***** ******** * * ******** * * consensus_7628#0 CA-TGTACAATTGAATG-CTATCTGG-CTATG-CTAGTTGATAACTTCGGTCATAACTGC 876 consensus_7628#1 CACTGTACCATTGAATGGCTATCTGGGCTATGGCTAGTTGATAACTTCGGTCATAAAAAA 245 consensus_7628#2 CA-TGTACAATTGAATG-CTATCTGG-CTATG-CTAGTTGATAACTTCGGTCATAAAAAA 88 ** ***** ******** ******** ***** *********************** consensus_7628#0 AGGTTTTGTGCAGGTATTCTAGGTGA------------------ 902 consensus_7628#1 AAAA---------------------------------------- 249 consensus_7628#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 132 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||