These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [ACCCCCTCGACGGCCGGAACACATCGGGGGGGAACGCAGCCATGGGTGCTCGAAGGCGACCATGATCTGCATAGACCACTCGGAGTGGATGCGGAACCGCGACTACTCCCCGTCGCGATTCCCAGGCTCAGGCCGACCCTGTCCACCTCATCTGTGGGCGCCCAGACCCAGTCCAACCCGGGAGAACACCGTGGGGCGTCATGACCATGGGCCCGAAAGGGGCGTGCCCCTTGCTCCGTCACTCCCACCATTCGACCTCCGGCAAGATTCTCCCCTGGTATGCCCCGGACTTGAAGTTGGGTGCCGAAGCCAATTTGGGCTGCAGCCATTCAGGGTGCCCCAGCCGGGCTCTGAAGGCATCCCCCAGAATTAGAAGGCCCCCACCGCCGGATTATTAGCCTTTAATTGGAAGGCCCGGTGAAATACCACCAGAAAGGTTTTGGAAACCCATCGGGAAAAAGCCGAGGAAGAATAATGTGGCCCCTGACCTCCTGGACTTGGGTTAACCCCATTATTATTACCCGGAAAACCCGGAAGCCCCAATCC] [+] EMBL CA753365 [ACCCCCTCGACGGCCGGAACACATCGGGGGGGAACGCAGCCATGGGTGCTCGAAGGCGACCATGATCTGCATAGACCACTCGGAGTGGATGCGGAACCGCGACTACTCCCCGTCGCGATTCCCAGGCTCAGGCCGACCCTGTCCACCTCATCTGTGGGCGCCCAGACCCAGTCCAACCCGGGAGAACACCGTGGGGCGTCATGACCATGGGCCCGAAAGGGGCGTGCCCCTTGCTCCGTCACTCCCACCATTCGACCTCCGGCAAGATTCTCCCCTGGTATGCCCCGGACTTGAAGTTGGGTGCCGAAGCCAATTTGGGCTGCAGCCATTCAGGGTGCCCCAGCCGGGCTCTGAAGGCATCCCCCAGAATTAGAAGGCCCCCACCGCCGGATTATTAGCCTTTAATTGGAAGGCCCGGTGAAATACCACCAGAAAGGTTTTGGAAACCCATCGGGAAAAAGCCGAGGAAGAATAATGTGGCCCCTGACCTCCTGGACTTGGGTTAACCCCATTATTATTACCCGGAAAACCCGGAAGCCCCAATCC] consensusID : consensus_7632#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 352 fasta sequence [CCGTATCATCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGAT-TCCAGGCTCAGGCCGA-CGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTNCGCGTNCTTCGTCACTCCCACCAGCGACCTCGGCAAGATNCTCGTTTGTATTCACGGCTTTTAAGTTNGTGCTGAAGAAATTTTGCTTCAAGAATTCAGGTTCTNA] [+] EMBL CF307864 [CCGTATCATCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGAT TCCAGGCTCAGGCCGA CGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGTCCAACCCGGAGAACACGGTGGGCGTC ] [+] EMBL OSS13105A [ TCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGAT TCCAGGCTCAGGCCGA CGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTNCGCGTNCTTCGTCACTCCCACCAGCGACCTCGGCAAGATNCTCGTTTGTATTCACGGCTTTTAAGTTNGTGCTGAAGAAATTTTGCTTCAAGAATTCAGGTTCTNA] [+] EMBL C26519 [ TTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCG CTNNGCGATNTCCAGGCTCAGGCCGANCGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGTCCAACCCGGAGAACACGGTGGGCGTC ] [+] EMBL CB683635 [ CCCCCCTTTGGGCGGAACACATCGGGGGGACGCAGCCATGGTGCTCGAGGCGACCATGATCTGCATAGACAACTCTGACTGGATGCGGAACGGCGACTACTCGCCGTCGCGAT TCCAGGCTCATGCCGA CGCCGTCAACCTCATCTGTGGCGCCAAGACCCAATCCAACCCGGAGAACACGGTGGGCGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7632#0 ------------------------------ACCCCCTCGACGGCCGGAACACATCGGGGG 30 consensus_7632#1 CCGTATCATCTTGCTCCCCAAACCAAGCCAACCCCCTCGACGGCCGGAACACATCGGGGG 60 ****************************** consensus_7632#0 GGAACGCAGCCATGGGTGCTCGAAGGCGACCATGATCTGCATAGACCACTCGGAGTGGAT 90 consensus_7632#1 G--ACGCAGCCATGG-TGCTCGA-GGCGACGATGATCTGCATAGACAACTCGGAGTGGAT 116 * ************ ******* ****** *************** ************* consensus_7632#0 GCGGAACCGCGACTACTCCCCGTCGCGATTCCCAGGCTCAGGCCGACCCTGTCCACCTCA 150 consensus_7632#1 GCGGAACGGCGACTACTCGCCGTCGCGATTCC-AGGCTCAGGCCGACGCCGTCAACCTCA 175 ******* ********** ************* ************** * *** ****** consensus_7632#0 TCTGTGGGCGCCCAGACCCAGTCCAACCCGGGAGAACACCGTGGGGCGTCATGACCATGG 210 consensus_7632#1 TCTGTGG-CGCCAAGACCCAGTCCAACCCGG-AGAACACGGTGGG-CGTCATGACGATGG 232 ******* **** ****************** ******* ***** ********* **** consensus_7632#0 GCCCGAAAGGGGCGTGCCCCTTGCTCCGTCACTCCCACCATTCGACCTCCGGCAAGATTC 270 consensus_7632#1 --CCGGAAAGGGCGTNCGCGTN-CTTCGTCACTCCCACCAG-CGACCTC-GGCAAGATNC 287 *** ** ****** * * * ** ************** ******* ******** * consensus_7632#0 TCCCCTGGTATGCCCCGGACTTGAAGTTGGGTGCCGAAGCCAATTTGGGCTGCAGCCATT 330 consensus_7632#1 TCGTTTG-TAT-TCACGGCTTTTAAGTTNG-TGCTGAAG--AAATTTTGCTTCAAGAATT 342 ** ** *** * *** ** ***** * *** **** ** ** *** ** *** consensus_7632#0 CAGGGTGCCCCAGCCGGGCTCTGAAGGCATCCCCCAGAATTAGAAGGCCCCCACCGCCGG 390 consensus_7632#1 CAGGTTCTNA-------------------------------------------------- 352 **** * consensus_7632#0 ATTATTAGCCTTTAATTGGAAGGCCCGGTGAAATACCACCAGAAAGGTTTTGGAAACCCA 450 consensus_7632#1 ------------------------------------------------------------ consensus_7632#0 TCGGGAAAAAGCCGAGGAAGAATAATGTGGCCCCTGACCTCCTGGACTTGGGTTAACCCC 510 consensus_7632#1 ------------------------------------------------------------ consensus_7632#0 ATTATTATTACCCGGAAAACCCGGAAGCCCCAATCC 546 consensus_7632#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||