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Oryza sativa
cluster # 7635 cluster # 7635       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7635#0 length = 879 sequences # 3  
consensus_7635#1 length = 704 sequences # 1  
consensus_7635#2 length = 184 sequences # 1  

consensusID : consensus_7635#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 879
fasta sequence
                              [AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCACTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAA-TTTGTTTGGAGTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTTGGAGAGTACAAGAGTCGAAATGTTAAGTCTTTTAGAGACAAA]

[+] EMBL CA766199             [AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCACTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAANTTGGTTTGGAGTATTA                                                                                             ]
[+] EMBL CB096768             [                                                                              GGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTA GAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAA TTTGTTTGGAGTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTTGGAGAGTACAAGAGTCGAAA                      ]
[-] EMBL CA762935             [                                                                                                                                                                                        AGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTAT AAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACACCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAA TTTGTTTGGAGTATTAGTCCAAGATGATTTCAGGCTTTCAGCTGCCTGCTATAACGATACCGCATTT GAGAGTACAAGAGTTGAACTGTTAAGTCTTTTAGAGACAAA]


>consensus_7635#0 AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCA CTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTA AATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGAT GGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCC ACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTT GTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCG AGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAG ACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGC TGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGT CCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATAT GTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGT GTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGA AAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAATTTGTTTGGA GTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTTGGA GAGTACAAGAGTCGAAATGTTAAGTCTTTTAGAGACAAA



consensusID : consensus_7635#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence
                              [GGAGTTGTAATGATAATTATTTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTAGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGTGACTTCAGTGTTATTATAGTTTTTTTTTGCATGTTACATGATCTACATTCTTGTGATTGCGATGCAGGTCTTACATTGCTAGGTACTCACCTGTCTACTAAATCATAATTTGTTTGGTCATGTCCATTTTTTTTGTTTCATAATCTGATGTATAACAACCATCAAAATTTTGATGAATGCAAGAATCCCATCTCTTGATATCTTTATTTTTTTTAGAACTCAGATCTTTATAAATTCTTGTGAGATCTTTATAAATACATCGGGTTGTACAAGCAAGTCATGTTCTGAATTTTTTTTGATGGATAAGTTCAATCGTGGTTAAACAGCCTGCCACTCGACACTGTCCTGAGGGATATTGACCCATGTGGCCATGTGTAATGCTAAATTATATTTCGGAAGCTCTTGCTGCATGTTCTACATATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTAAGGGAACAGAAGCATGATATAGATCAGTTAAAAACGCCTGCTAC]

[+] EMBL CB682031             [GGAGTTGTAATGATAATTATTTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTAGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGTGACTTCAGTGTTATTATAGTTTTTTTTTGCATGTTACATGATCTACATTCTTGTGATTGCGATGCAGGTCTTACATTGCTAGGTACTCACCTGTCTACTAAATCATAATTTGTTTGGTCATGTCCATTTTTTTTGTTTCATAATCTGATGTATAACAACCATCAAAATTTTGATGAATGCAAGAATCCCATCTCTTGATATCTTTATTTTTTTTAGAACTCAGATCTTTATAAATTCTTGTGAGATCTTTATAAATACATCGGGTTGTACAAGCAAGTCATGTTCTGAATTTTTTTTGATGGATAAGTTCAATCGTGGTTAAACAGCCTGCCACTCGACACTGTCCTGAGGGATATTGACCCATGTGGCCATGTGTAATGCTAAATTATATTTCGGAAGCTCTTGCTGCATGTTCTACATATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTAAGGGAACAGAAGCATGATATAGATCAGTTAAAAACGCCTGCTAC]


>consensus_7635#1 GGAGTTGTAATGATAATTATTTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGAC TAGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTT GTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTT GTCAAGAAAGTGAAGGTGACTTCAGTGTTATTATAGTTTTTTTTTGCATGTTACATGATC TACATTCTTGTGATTGCGATGCAGGTCTTACATTGCTAGGTACTCACCTGTCTACTAAAT CATAATTTGTTTGGTCATGTCCATTTTTTTTGTTTCATAATCTGATGTATAACAACCATC AAAATTTTGATGAATGCAAGAATCCCATCTCTTGATATCTTTATTTTTTTTAGAACTCAG ATCTTTATAAATTCTTGTGAGATCTTTATAAATACATCGGGTTGTACAAGCAAGTCATGT TCTGAATTTTTTTTGATGGATAAGTTCAATCGTGGTTAAACAGCCTGCCACTCGACACTG TCCTGAGGGATATTGACCCATGTGGCCATGTGTAATGCTAAATTATATTTCGGAAGCTCT TGCTGCATGTTCTACATATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTA AGGGAACAGAAGCATGATATAGATCAGTTAAAAACGCCTGCTAC



consensusID : consensus_7635#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence
                              [AAGCGAATTCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACCGTAT]

[+] EMBL CF329369             [AAGCGAATTCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACCGTAT]


>consensus_7635#2 AAGCGAATTCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCAT CGATGACTGTAATTATTAATGTGCTCGCATGTGTATAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACC GTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7635#0      AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCA 60
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      ------------------------------------------------------------
                                                                                  

consensus_7635#0      CTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTA 120
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      ---------------------------GGAGTTGTAATGATAATTATTTGCTCAACCCTA 33
                                                                                  

consensus_7635#0      AATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGAT 180
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      AATTGCTTCCGCCGATCGCCCAGGGACTAG-AGTGTTACTATGGCTAGAGCAAATGAGAT 92
                                                                                  

consensus_7635#0      GGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCC 240
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      GGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCC 152
                                                                                  

consensus_7635#0      ACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTT 300
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      ACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGTGACTTCAGTGTTATT 212
                                                                                  

consensus_7635#0      GTA-TTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACC 359
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      ATAGTTTTTTTTTGCATGTTACATGATCTACATTCTTGTGATTGCGATGCAGGTCTTACA 272
                                                                                  

consensus_7635#0      GAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTA 419
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      TTGCTAGGTACTCACCTGTCTACTAAATCATAATTTGTTTGGTCATGTCCATTTTTTTTG 332
                                                                                  

consensus_7635#0      GACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTG 479
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      TTTCATAATCTGATGTATAACAACCATCAAAATTTTGATGAATGCAAGAATCCCATCTCT 392
                                                                                  

consensus_7635#0      CTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTG 539
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      TGATATCTTTATTTTTTTTAG----AACTCAGATCTTTATAAATTC--TTGTGAGATCTT 446
                                                                                  

consensus_7635#0      TCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATA 599
consensus_7635#2      -----------------------------AAGCGAATTCAACTATCCTGCAGCTTGGATA 31
consensus_7635#1      TATAA-ATACATCGGGTTGTACAAGCAAGTCATGTTCTGAATTTTTTTTGA---TGGATA 502
                                                             ** * *  *  *   ******

consensus_7635#0      TGTGC--TCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCA 657
consensus_7635#2      TGTGC--TCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCA 89
consensus_7635#1      AGTTCAATCGTGGTTAAACAGCCTGCCAC-TCGAC-ACTGTCCTGAGGGATATTGACCCA 560
                       ** *  **    * *       *  * * ****  *****  * *   ** *   * **

consensus_7635#0      TGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGG 717
consensus_7635#2      TGTGTATAAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA 146
consensus_7635#1      TGTGGCCATGTGTAATGCTAAATTATATT---TCGGAAGCTCTTGCTGCATGTTCTACAT 617
                      ****   *     *     * *    *                      *     **   

consensus_7635#0      AGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAATTTGTTT 777
consensus_7635#2      AAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACCGTAT---------------------- 184
consensus_7635#1      ATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTAAGGGAACAGAAGCATGA 677
                      * * *  *  *                   *     *                       

consensus_7635#0      GGAGTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTT 837
consensus_7635#2      ------------------------------------------------------------
consensus_7635#1      TATAGATCAGTTAAAAACGCCTGCTAC--------------------------------- 704
                                                                                  

consensus_7635#0      GGAGAGTACAAGAGTCGAAATGTTAAGTCTTTTAGAGACAAA 879
consensus_7635#2      ------------------------------------------
consensus_7635#1      ------------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)