These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 879 fasta sequence [AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCACTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAA-TTTGTTTGGAGTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTTGGAGAGTACAAGAGTCGAAATGTTAAGTCTTTTAGAGACAAA] [+] EMBL CA766199 [AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCACTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAANTTGGTTTGGAGTATTA ] [+] EMBL CB096768 [ GGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTA GAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAA TTTGTTTGGAGTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTTGGAGAGTACAAGAGTCGAAA ] [-] EMBL CA762935 [ AGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTAT AAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACACCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAA TTTGTTTGGAGTATTAGTCCAAGATGATTTCAGGCTTTCAGCTGCCTGCTATAACGATACCGCATTT GAGAGTACAAGAGTTGAACTGTTAAGTCTTTTAGAGACAAA] consensusID : consensus_7635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [GGAGTTGTAATGATAATTATTTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTAGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGTGACTTCAGTGTTATTATAGTTTTTTTTTGCATGTTACATGATCTACATTCTTGTGATTGCGATGCAGGTCTTACATTGCTAGGTACTCACCTGTCTACTAAATCATAATTTGTTTGGTCATGTCCATTTTTTTTGTTTCATAATCTGATGTATAACAACCATCAAAATTTTGATGAATGCAAGAATCCCATCTCTTGATATCTTTATTTTTTTTAGAACTCAGATCTTTATAAATTCTTGTGAGATCTTTATAAATACATCGGGTTGTACAAGCAAGTCATGTTCTGAATTTTTTTTGATGGATAAGTTCAATCGTGGTTAAACAGCCTGCCACTCGACACTGTCCTGAGGGATATTGACCCATGTGGCCATGTGTAATGCTAAATTATATTTCGGAAGCTCTTGCTGCATGTTCTACATATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTAAGGGAACAGAAGCATGATATAGATCAGTTAAAAACGCCTGCTAC] [+] EMBL CB682031 [GGAGTTGTAATGATAATTATTTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTAGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGTGACTTCAGTGTTATTATAGTTTTTTTTTGCATGTTACATGATCTACATTCTTGTGATTGCGATGCAGGTCTTACATTGCTAGGTACTCACCTGTCTACTAAATCATAATTTGTTTGGTCATGTCCATTTTTTTTGTTTCATAATCTGATGTATAACAACCATCAAAATTTTGATGAATGCAAGAATCCCATCTCTTGATATCTTTATTTTTTTTAGAACTCAGATCTTTATAAATTCTTGTGAGATCTTTATAAATACATCGGGTTGTACAAGCAAGTCATGTTCTGAATTTTTTTTGATGGATAAGTTCAATCGTGGTTAAACAGCCTGCCACTCGACACTGTCCTGAGGGATATTGACCCATGTGGCCATGTGTAATGCTAAATTATATTTCGGAAGCTCTTGCTGCATGTTCTACATATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTAAGGGAACAGAAGCATGATATAGATCAGTTAAAAACGCCTGCTAC] consensusID : consensus_7635#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [AAGCGAATTCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACCGTAT] [+] EMBL CF329369 [AAGCGAATTCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACCGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7635#0 AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCA 60 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 ------------------------------------------------------------ consensus_7635#0 CTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTA 120 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 ---------------------------GGAGTTGTAATGATAATTATTTGCTCAACCCTA 33 consensus_7635#0 AATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGAT 180 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 AATTGCTTCCGCCGATCGCCCAGGGACTAG-AGTGTTACTATGGCTAGAGCAAATGAGAT 92 consensus_7635#0 GGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCC 240 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 GGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCC 152 consensus_7635#0 ACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTT 300 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 ACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGTGACTTCAGTGTTATT 212 consensus_7635#0 GTA-TTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACC 359 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 ATAGTTTTTTTTTGCATGTTACATGATCTACATTCTTGTGATTGCGATGCAGGTCTTACA 272 consensus_7635#0 GAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTA 419 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 TTGCTAGGTACTCACCTGTCTACTAAATCATAATTTGTTTGGTCATGTCCATTTTTTTTG 332 consensus_7635#0 GACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTG 479 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 TTTCATAATCTGATGTATAACAACCATCAAAATTTTGATGAATGCAAGAATCCCATCTCT 392 consensus_7635#0 CTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTG 539 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 TGATATCTTTATTTTTTTTAG----AACTCAGATCTTTATAAATTC--TTGTGAGATCTT 446 consensus_7635#0 TCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATA 599 consensus_7635#2 -----------------------------AAGCGAATTCAACTATCCTGCAGCTTGGATA 31 consensus_7635#1 TATAA-ATACATCGGGTTGTACAAGCAAGTCATGTTCTGAATTTTTTTTGA---TGGATA 502 ** * * * * ****** consensus_7635#0 TGTGC--TCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCA 657 consensus_7635#2 TGTGC--TCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCA 89 consensus_7635#1 AGTTCAATCGTGGTTAAACAGCCTGCCAC-TCGAC-ACTGTCCTGAGGGATATTGACCCA 560 ** * ** * * * * * **** ***** * * ** * * ** consensus_7635#0 TGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGG 717 consensus_7635#2 TGTGTATAAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA 146 consensus_7635#1 TGTGGCCATGTGTAATGCTAAATTATATT---TCGGAAGCTCTTGCTGCATGTTCTACAT 617 **** * * * * * * ** consensus_7635#0 AGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAATTTGTTT 777 consensus_7635#2 AAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACCGTAT---------------------- 184 consensus_7635#1 ATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTAAGGGAACAGAAGCATGA 677 * * * * * * * consensus_7635#0 GGAGTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTT 837 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 TATAGATCAGTTAAAAACGCCTGCTAC--------------------------------- 704 consensus_7635#0 GGAGAGTACAAGAGTCGAAATGTTAAGTCTTTTAGAGACAAA 879 consensus_7635#2 ------------------------------------------ consensus_7635#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||