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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2253 fasta sequence
[AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGGTGCCGTGCATCGCGCCGCCGCCGCCGGCCACCACCATCGTCGCCGCCGCTGACCGCCACCTCGCGAGGTGCCGACGGCCGTCGCGGGCTCGCGGCGTCACGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGGGCACATCTAGCTGCTTCTTGTTCTACCCCCAAGAAAGGTATCGTGTCCTAGGCTCCTGGCTACTCCCCCACTATTTTGGCCTTTTGGGTAAGCACAGACCCGGNCATAAAAAGTAAAGCAGCCGATCGAGCAGCGGTGCAGCGCCATTCGTGCACAGGCATCATGGCG-ACCTCCCTGACCCTGATCGNCACACCATGCACGGGTTCTAGATCATCTTCGTCCTTCGCACTCGCTCCACGGCTGCCGCCTCGTTGCAGCAACGCGACTGCAGCACGTCGCCGCGCCGTGAGGGCAACCACGCTGCAATCGGATCAGGAACCTGCAGGATCAGGAGACAGCGGCGCCACGACGACGAAGCTGTCTGCCTCGACCAGCGTCCGCCAAGAACGCTGGGAAGGCGACCTGCCCATCGAGGGATGCCTCCCTCCTTGGCTGAATGGCACGTACATCAGGAACGGGCCGGGGATGTGGGACGTCGGGGAGCACGCGTTCCACCACCTGTTCGACGGCTACGCGACGCTCGTCCGCGTCTCCTTCCGCGGCGGGGGTGGTGCGCGCGCCACGGGGGCGCACCGGCAGATCGAGTCGGAGGCGTACAGGGCCGCCGTGGCGCGCGGCCGCCCGGTCCTCCGCGAGTTCTCCCACTGCCCCGCGCCGGCCAAGAGCCTGCTCCACCGCTTCGGCGATCTCGTCGGCCTCGTCACCGGCGCCGCGCTCACCGACAACCCCAACAGCGCCGTGCTGCCGCTCGGCGACGGCCGGGTGATGTGCCTCACCGAGACCACCAAGAGCTCCGTCCTCATCGACCCGGACACGCTCGAGACGGTGGGCAGGTTCCGGTACACGGACAGGCTGGGTGGCATGGTGCAGTCGGCGCACCCGATCGTGACCGACACGGAGTTCCTGACGCTGCTGCCGGACCTCGTCCGTCCGGGCCACCTCGTCGTGAGGATGGAGGCCGGGAGCAACGAGAGGAAGGTGATCGGGAGAATGGACTGCCGCGGCGGGCCGTCGCCCGGGTGGCTGCACTCGTTCGCCGTCACGGAGAAGTACGCCGTCGTGCCGGAGATGCCGCTCCGGTACTCCTCCGCCAGCCTGCTCGCCTCCGAGCTCGCCCCGTTCTACGCCTTCGACTGGGTCCCGGCGTCCGGCAGCTACATGCACGTCATGTGCAAGTCCACCGGCAAGACCGTGGCGAGCGTGGAGGTGCCTCCTTTCATGGCGATCCACTTCATCAACGCATACGAGGAGGAAGGCGACGAGGCCGCCGTCGTTGTCGACTGCTGTGAGCACTACGGTGACCCTGCCATCATCGAGACACTCGTCCTCAGTAGACTGAGATTGTTAAGGGGCAAGGACGTTTTACCTAACGCCAGGGTGGGGCGGTTCAGGATCCCGCTGGATGGGAGCCCGTTCGGCGAACTTGAGACGGCGCTGGACCCGGAGGAGCACGGGCGGGGGATGGACATGTGCAGCATCAACCCGGCGCGCCTCGGCAGGAAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTCACCAAGATCGACCTGGTGGAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCGTCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGACGAAGACGATGGAGTGGTGATATCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGTTTGAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGGATCCCTGCGACGGAAGAGTGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGAAGACTAGGATCATATGTATGAGCATCCATGTAACTCGTGGGGATTTTTATTTTAAGCACTACTGGAGAAACCATTTTTGTTGGGTTGGACAAAATCCACAATAATCCCAGTTTGAATATAAACCGGAACTAAAGATGATTTTTTATCCCGGGTTAAAACTTTATCGGCCCTAAGTGAACACCAANCGTGACTTAAGATGATTTTTAAAAAAAA]
[+] EMBL AU161166 [AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGGTGCCGTGCATCGCGCCGCCGCCGCCGGCCACCACCATCGTCGCCGCCGCTGACCGCCACCTCGCGAGGTGCCGACGGCCGTCGCGGGCTCGCGGCGTCACGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGGGCACATCTAGCTGCTTCTTGTTCTACCCCCAAGAAAGGTATCGTGTCCTAGGCTCCTGGCTACTCCCCCACTATTTTGGCCTTTTGGGTAAGCACAGACCCGGNCATAAAAAGTAAAGCAGCCGATCGAGCAGCGGTGCAGCGCCATTCGTGCACAGGCATCATGGCGAACCTCCCTGACCCTGATCGNCACACCATGCACGGGTTCTAGATCATCT ]
[+] EMBL AK058473 [ TCGTGCACAGGCATCATGGCG ACCTCCCTGACCCTGATCGCCACACCATGCACGGCTCCTAGATCATCCTCGTCCTTCGCACTCGCTCCACGGCTGCCGCCTCGTTGCAGCAACGCGACTGCAGCACGTCGCCGCGCCGTGAGGGCAACCACGCTGCAATCGGATCAGGAACCTGCAGGATCAGGAGACAGCGGCGCCACGACGACGAAGCTGTCTGCCTCGACCAGCGTCCGCCAAGAACGCTGGGAAGGCGACCTGCCCATCGAGGGATGCCTCCCTCCTTGGCTGAATGGCACGTACATCAGGAACGGGCCGGGGATGTGGGACGTCGGGGAGCACGCGTTCCACCACCTGTTCGACGGCTACGCGACGCTCGTCCGCGTCTCCTTCCGCGGCGGGGGTGGTGCGCGCGCCACGGGGGCGCACCGGCAGATCGAGTCGGAGGCGTACAGGGCCGCCGTGGCGCGCGGCCGCCCGGTCCTCCGCGAGTTCTCCCACTGCCCCGCGCCGGCCAAGAGCCTGCTCCACCGCTTCGGCGATCTCGTCGGCCTCGTCACCGGCGCCGCGCTCACCGACAACCCCAACAGCGCCGTGCTGCCGCTCGGCGACGGCCGGGTGATGTGCCTCACCGAGACCACCAAGAGCTCCGTCCTCATCGACCCGGACACGCTCGAGACGGTGGGCAGGTTCCGGTACACGGACAGGCTGGGTGGCATGGTGCAGTCGGCGCACCCGATCGTGACCGACACGGAGTTCCTGACGCTGCTGCCGGACCTCGTCCGTCCGGGCCACCTCGTCGTGAGGATGGAGGCCGGGAGCAACGAGAGGAAGGTGATCGGGAGAATGGACTGCCGCGGCGGGCCGTCGCCCGGGTGGCTGCACTCGTTCGCCGTCACGGAGAAGTACGCCGTCGTGCCGGAGATGCCGCTCCGGTACTCCTCCGCCAGCCTGCTCGCCTCCGAGCTCGCCCCGTTCTACGCCTTCGACTGGGTCCCGGCGTCCGGCAGCTACATGCACGTCATGTGCAAGTCCACCGGCAAGACCGTGGCGAGCGTGGAGGTGCCTCCTTTCATGGCGATCCACTTCATCAACGCATACGAGGAGGAAGGCGACGAGGCCGCCGTCGTTGTCGACTGCTGTGAGCACTACGGTGACCCTGCCATCATCGAGACACTCGTCCTCAGTAGACTGAGATTGTTAAGGGGCAAGGACGTTTTACCTAACGCCAGGGTGGGGCGGTTCAGGATCCCGCTGGATGGGAGCCCGTTCGGCGAACTTGAGACGGCGCTGGACCCGGAGGAGCACGGGCGGGGGATGGACATGTGCAGCATCAACCCGGCGCGCCTCGGCAGGAAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTCACCAAGATCGACCTGGTGGAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCGTCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGACGAAGACGATGGAGTGGTGATATCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGTTTGAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGGATCCCTGCGACGGAAGAGTGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGAAGACTAGGATCATATGTATGAGCATCCATGTAACTCGTGGGGATTTTTATTTTAA ]
[+] EMBL AU161167 [ GCAGCACGTCGCCGCGCCGTGAGGGCAACCACGCTGCAATCGGATCAGGAACCTGCAGGATCAGGAGACAGCGGCGCCACGACGACGAAGCTGTCTGCCTCGACCAGCGTCCGCCAAGAACGCTGGGAAGGCGACCTGCCCATCGAGGGATGCCTCCCTCNTTGGCTGAATGGCACGTACATCAGGAACGGGCCGGGGATGTGGGACGTCGGGGAGCACGCGTTCCACCACCTGTTCGACGG TACGCGACGCTCGTCCGCGTCTCCTTCCGCGGCGGGGGTGGTGCGCGCGCCACGGGGGCGCACCGGCAGATCGAGTCGGAGGCGTACAGGGCC ]
[+] EMBL BP184554 [ ACTTGAGACGGCGCTGGACCCGGAGGAGCACGGGCGGGGGATGGACATGTGCAGCATCAACCCGGCGCGCCTCGGCAGGAAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTCACCAAGATCGACCTGGTGGAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCGTCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGACGAAGACGATGGAGTGGTGATATCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGTTTGAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGGATCCCTGCGACGGAAGANTGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGAAGACTAGGATCATATGTATGAGCATTCATGTAACTCGTGGGGATTTTTATTTTAAGCACTACTGGAGAAACCATTTTTGTTGGGTTGGACAAAATCCACAATAATCCCAGTTTGAATATAAACCGGAACTAAAGATGATTTTTTATCCCGGGTTAAAACTTTATCGGCCCTAAGTGAACACCAANCGTGACTTAAGATGATTTTTAAAAAAAA]
consensusID : consensus_7640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence
[AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGNTGCCGTGCATCGCGCCGCGCGCGNCACCACCATCGTCGCGCGCTGACCGCACCTCGCGAGGTGCGANGNCGTCGCGGGCTCGGGCGTCANGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGGCACATCTAGNTGCTNC]
[+] EMBL C28065 [AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGNTGCCGTGCATCGCGCCGCGCGCGNCACCACCATCGTCGCGCGCTGACCGCACCTCGCGAGGTGCGANGNCGTCGCGGGCTCGGGCGTCANGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGGCACATCTAGNTGCTNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7640#0 AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGGTGCCGTGCATCGCGCC 60
consensus_7640#1 AGCTAAGACCTACCCCAGCTCAGTGCTGCTCAAGTTTTGCTCGNTGCCGTGCATCGCGCC 60
******************************************* ****************
consensus_7640#0 GCCGCCGCCGGCCACCACCATCGTCGCCGCCGCTGACCGCCACCTCGCGAGGTGCCGACG 120
consensus_7640#1 G----CGCGCGNCACCACCATCGTCGC--GCGCTGACCGC-ACCTCGCGAGGTGCGA--N 111
* *** * *************** ********** **************
consensus_7640#0 GCCGTCGCGGGCTCGCGGCGTCACGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGG 180
consensus_7640#1 GNCGTCGCGGGCTCG-GGCGTCANGTCGATAGCAGAGCAAGCAGGTGGCAAGGTTGAAGG 170
* ************* ******* ************************************
consensus_7640#0 GCACATCTAGCTGCTTCTTGTTCTACCCCCAAGAAAGGTATCGTGTCCTAGGCTCCTGGC 240
consensus_7640#1 -CACATCTAGNTGCTNC------------------------------------------- 186
********* **** *
consensus_7640#0 TACTCCCCCACTATTTTGGCCTTTTGGGTAAGCACAGACCCGGNCATAAAAAGTAAAGCA 300
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GCCGATCGAGCAGCGGTGCAGCGCCATTCGTGCACAGGCATCATGGCGACCTCCCTGACC 360
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 CTGATCGNCACACCATGCACGGGTTCTAGATCATCTTCGTCCTTCGCACTCGCTCCACGG 420
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 CTGCCGCCTCGTTGCAGCAACGCGACTGCAGCACGTCGCCGCGCCGTGAGGGCAACCACG 480
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 CTGCAATCGGATCAGGAACCTGCAGGATCAGGAGACAGCGGCGCCACGACGACGAAGCTG 540
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 TCTGCCTCGACCAGCGTCCGCCAAGAACGCTGGGAAGGCGACCTGCCCATCGAGGGATGC 600
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 CTCCCTCCTTGGCTGAATGGCACGTACATCAGGAACGGGCCGGGGATGTGGGACGTCGGG 660
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GAGCACGCGTTCCACCACCTGTTCGACGGCTACGCGACGCTCGTCCGCGTCTCCTTCCGC 720
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GGCGGGGGTGGTGCGCGCGCCACGGGGGCGCACCGGCAGATCGAGTCGGAGGCGTACAGG 780
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GCCGCCGTGGCGCGCGGCCGCCCGGTCCTCCGCGAGTTCTCCCACTGCCCCGCGCCGGCC 840
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 AAGAGCCTGCTCCACCGCTTCGGCGATCTCGTCGGCCTCGTCACCGGCGCCGCGCTCACC 900
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GACAACCCCAACAGCGCCGTGCTGCCGCTCGGCGACGGCCGGGTGATGTGCCTCACCGAG 960
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 ACCACCAAGAGCTCCGTCCTCATCGACCCGGACACGCTCGAGACGGTGGGCAGGTTCCGG 1020
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 TACACGGACAGGCTGGGTGGCATGGTGCAGTCGGCGCACCCGATCGTGACCGACACGGAG 1080
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 TTCCTGACGCTGCTGCCGGACCTCGTCCGTCCGGGCCACCTCGTCGTGAGGATGGAGGCC 1140
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GGGAGCAACGAGAGGAAGGTGATCGGGAGAATGGACTGCCGCGGCGGGCCGTCGCCCGGG 1200
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 TGGCTGCACTCGTTCGCCGTCACGGAGAAGTACGCCGTCGTGCCGGAGATGCCGCTCCGG 1260
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 TACTCCTCCGCCAGCCTGCTCGCCTCCGAGCTCGCCCCGTTCTACGCCTTCGACTGGGTC 1320
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 CCGGCGTCCGGCAGCTACATGCACGTCATGTGCAAGTCCACCGGCAAGACCGTGGCGAGC 1380
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GTGGAGGTGCCTCCTTTCATGGCGATCCACTTCATCAACGCATACGAGGAGGAAGGCGAC 1440
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GAGGCCGCCGTCGTTGTCGACTGCTGTGAGCACTACGGTGACCCTGCCATCATCGAGACA 1500
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 CTCGTCCTCAGTAGACTGAGATTGTTAAGGGGCAAGGACGTTTTACCTAACGCCAGGGTG 1560
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GGGCGGTTCAGGATCCCGCTGGATGGGAGCCCGTTCGGCGAACTTGAGACGGCGCTGGAC 1620
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 CCGGAGGAGCACGGGCGGGGGATGGACATGTGCAGCATCAACCCGGCGCGCCTCGGCAGG 1680
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 AAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTC 1740
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 ACCAAGATCGACCTGGTGGAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCG 1800
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 TCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGACGAAGACGATGGAGTGGTGATA 1860
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 TCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGTTT 1920
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 GAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGG 1980
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 ATCCCTGCGACGGAAGAGTGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGA 2040
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 AGACTAGGATCATATGTATGAGCATCCATGTAACTCGTGGGGATTTTTATTTTAAGCACT 2100
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 ACTGGAGAAACCATTTTTGTTGGGTTGGACAAAATCCACAATAATCCCAGTTTGAATATA 2160
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 AACCGGAACTAAAGATGATTTTTTATCCCGGGTTAAAACTTTATCGGCCCTAAGTGAACA 2220
consensus_7640#1 ------------------------------------------------------------
consensus_7640#0 CCAANCGTGACTTAAGATGATTTTTAAAAAAAA 2253
consensus_7640#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||