cluster # 7649

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7649 cluster # 7649 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7649#0 length = 989 sequences # 2
consensus_7649#1 length = 699 sequences # 1

consensus_7649#2 length = 398 sequences # 1
consensus_7649#3 length = 127 sequences # 1

consensusID : consensus_7649#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 989
fasta sequence

                              [GGCGTACTGCAACAAATATAACTCTACTTATGATGATCTGCCAGGCAATTTACAACCTGCAGGTATTCTTATTGAGCACAACGGTGATGATCTTGTTTCCCCAGATTATGGTAAAAACACCATGAAACAGAAGCAAAACACAAATATGGAATCTTTGTCAGTCTGTAAGGAGGGAGTGTCTGCTAAAAAGCCTGCGGAACTTATTGTGGAGAAATCTTCAGCATGCATAAATGTGGATTATGAATATGTGAACATATTGGCTGATACCCCAGGCATCAAAAGAGGGCTAGAATCTCCTTCAGCATGGAAGTCCCCTTGGTTTGTAGATATGCAATTTCA-GGGTTCATACTTCGTCAGCCCAGCTAATGGAAGTTACGATGCGCTAGGACTGGTGAAGCAGATAAATGTGCAGACTGCTGCTGCTTTGGCAGAAGCCCGTGAGGTGCTGGCAAGTGGTGGCCAATCTGAGAACATAAATTCTGATAAGGAAAACCTGGAGAATCCAGATGCCAAGAAGGAACCAGGAGCAACAACCAAATTGCAAGCAAAAATCAAGACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCATCAGATAAAAAAGCTGGCAGCAGTCTGGGAAGATCTTTGAGCTCCCCTATTCCTTCGTCCCATCTCCTGAAAAGTTTTCGATAGGTAGATATATGAGGAATACACCTCAGGTTAGCTGTAACAATCATTATGTGAAACTGGGAATCTTGGTCATTACCGGATTCTTTGNGATTATTACCGTAAAGAAAGCTGCTTCTTGGGACTGCTATCGCCAGCTTACAATTTCAGCCCAGAAGCTAGCTTCCAAAAGGCAGCAGAATACTTGGGCTGTTGAAGCTGTAGTATTTAAATTTAGAAATTTTAATTTATTCCTGTTCAATATTATTTGACATTCCAGGCCTCTTTGTGGATTTGATTCAAAATATCATTTTGCAAAAAAAAA]

[+] EMBL CA764708             [GGCGTACTGCAACAAATATAACTCTACTTATGATGATCTGCCAGGCAATTTACAACCTGCAGGTATTCTTATTGAGCACAACGGTGATGATCTTGTTTCCCCAGATTATGGTAAAAACACCATGAAACAGAAGCAAAACACAAATATGGAATCTTTGTCAGTCTGTAAGGAGGGAGTGTCTGCTAAAAAGCCTGCGGAACTTATTGTGGAGAAATCTTCAGCATGCATAAATGTGGATTATGAATATGTGAACATATTGGCTGATACCCCAGGCATCAAAAGAGGGCTAGAATCTCCTTCAGCATGGAAGTCCCCTTGGTTTGTAGATATGCAATTTCA GGGTTCATACTTCGTCAGCCCAGCTAATGGAAGTTACGATGCGCTAGGACTGGTGAAGCAGATAAATGTGCAGACTGCTGCTGCTTTGGCAGAAGCCCGTGAGGTGCTGGCAAGTGGTGGCCAATCTGAGAACATAAATTCTGATAAGGAAAACCTGGAGAATCCAGATGCCAAGAAGGAACCAGGAGCAACAACCAAATTGCAAGCAAAAATCAAGACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCATCAGATAAAAAAGCTGGCAGCAGTCTGGGAAGATCTTTGAGCTCCCCTATTCCTTCGTCCCATCTCCTGAAAAGTTTTCGATAGGTAGATATATGAGGAATACACCTCAGGTTAGCTGTAACAATCATTATGTGAAACTGGGAATCTTGGTCATTACCGGATTCTTTGNGATTATTACCGTAAAGAAAGCTGCTTCTTGG                                                                                                                                                                                      ]
[-] EMBL CA760389             [                                                                                                                                                                                                                                                                                                            AGCATGGAAGTCCCCTTGGTTTGTAGATATGCAA TTCAGGGGTTCATACTTCGTCAGCCCAGCTAATGGAAGTTACGATGCGCTAGGATTGGTGAAGCAGATAAATGTGCAGACTGCTGCTGCTTTGGCAGAAGCCCGTGAGGTGCTGGCAAGTGGTGGCCAATCTGAGAACATAAATTCTGATAAGGAAAACCTGGAGAATCCAGATGCCAAGAAGGAACCAGGAGCAACAACCAAATTGCAAGCAAAAATCAAGACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCATCAGATAAAAAAGCTGGCAGCAGTCTGGGAAGATCTTTGAGCTCCCCTATTCCTTCGTCCCATCTCCTGAAAAGCTTTCGATAGGTAGATATATGAGGAATACACCTCAGGTTAGCTGTAACAATCATTATGTGAAACTGTGAATCTTGTTCATTACCGTATTCTTTGTGATTATTACCGTAAAGAAAGCTGCTTCTTGTGACTGCTATCGCCAGCTTACAATTTCAGCCCAGAAGCTAGCTTCCAAAAGGCAGCAGAATACTTGGGCTGTTGAAGCTGTAGTATTTAAATTTAGAAATTTTAATTTATTCCTGTTCAATATTATTTGACATTCCAGGCCTCTTTGTGGATTTGATTCAAAATATCATTTTGCAAAAAAAAA]




>consensus_7649#0
GGCGTACTGCAACAAATATAACTCTACTTATGATGATCTGCCAGGCAATTTACAACCTGC
AGGTATTCTTATTGAGCACAACGGTGATGATCTTGTTTCCCCAGATTATGGTAAAAACAC
CATGAAACAGAAGCAAAACACAAATATGGAATCTTTGTCAGTCTGTAAGGAGGGAGTGTC
TGCTAAAAAGCCTGCGGAACTTATTGTGGAGAAATCTTCAGCATGCATAAATGTGGATTA
TGAATATGTGAACATATTGGCTGATACCCCAGGCATCAAAAGAGGGCTAGAATCTCCTTC
AGCATGGAAGTCCCCTTGGTTTGTAGATATGCAATTTCAGGGTTCATACTTCGTCAGCCC
AGCTAATGGAAGTTACGATGCGCTAGGACTGGTGAAGCAGATAAATGTGCAGACTGCTGC
TGCTTTGGCAGAAGCCCGTGAGGTGCTGGCAAGTGGTGGCCAATCTGAGAACATAAATTC
TGATAAGGAAAACCTGGAGAATCCAGATGCCAAGAAGGAACCAGGAGCAACAACCAAATT
GCAAGCAAAAATCAAGACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTAT
AAGATCATCAGATAAAAAAGCTGGCAGCAGTCTGGGAAGATCTTTGAGCTCCCCTATTCC
TTCGTCCCATCTCCTGAAAAGTTTTCGATAGGTAGATATATGAGGAATACACCTCAGGTT
AGCTGTAACAATCATTATGTGAAACTGGGAATCTTGGTCATTACCGGATTCTTTGNGATT
ATTACCGTAAAGAAAGCTGCTTCTTGGGACTGCTATCGCCAGCTTACAATTTCAGCCCAG
AAGCTAGCTTCCAAAAGGCAGCAGAATACTTGGGCTGTTGAAGCTGTAGTATTTAAATTT
AGAAATTTTAATTTATTCCTGTTCAATATTATTTGACATTCCAGGCCTCTTTGTGGATTT
GATTCAAAATATCATTTTGCAAAAAAAAA

consensusID : consensus_7649#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 699
fasta sequence

                              [CTCCTTCAGCATGGAAGTCCCCTTGGTTCGTCGATATGCATTTTCAGGGTTCATACTTCACCAGCCCAGCTGATAGTTACGACGCACTAGGATTGATGAAGCAGATAAATGTGCAGACTGCTGCTGCTTTGGTGGAAGCCCGTGAGGTACTGGCAAGCGGCGGCCAATGTGACAACATAAGCTCTGATAAGGAAAACACGGGGAATCCAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATGGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAGACAAAAATGCTGGCAGCAATCTGGGAAGATATCTGAGCTCACCTATTCCTTCGTCCCATCTTCTGAAAAGTTTTAGATAGCTTGATATACCATGTGAGGAATACACCTCAGACTTGCTGTAACAATCATTATGCGAACGATCTTGTTCATTACCGTAAAAAAAGATGCTTCTTGTGACTTGCTCTCGACCTTACAATTTCAGCCCAGAAGCTACATTATTCCGCTCTATGATCACACTTCTGGTAGTACTAGAATATCTGATAATGGTATAAGTTTACCTGGCTATTAGAAATTCTTCAAGTTTATGCCTGTTATACTCAAATCCTACACCTAGATTTTCATTTTCAGCTATAAAATGTTGAAGCTAAACCATAGCTTCCAAAAGGCAAA]

[+] EMBL OSA495800            [CTCCTTCAGCATGGAAGTCCCCTTGGTTCGTCGATATGCATTTTCAGGGTTCATACTTCACCAGCCCAGCTGATAGTTACGACGCACTAGGATTGATGAAGCAGATAAATGTGCAGACTGCTGCTGCTTTGGTGGAAGCCCGTGAGGTACTGGCAAGCGGCGGCCAATGTGACAACATAAGCTCTGATAAGGAAAACACGGGGAATCCAGATGCCAAGAAGGAACCAGGGACAACCAAATTGCAAACAAAAATCATGGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAAGATCATCAGACAAAAATGCTGGCAGCAATCTGGGAAGATATCTGAGCTCACCTATTCCTTCGTCCCATCTTCTGAAAAGTTTTAGATAGCTTGATATACCATGTGAGGAATACACCTCAGACTTGCTGTAACAATCATTATGCGAACGATCTTGTTCATTACCGTAAAAAAAGATGCTTCTTGTGACTTGCTCTCGACCTTACAATTTCAGCCCAGAAGCTACATTATTCCGCTCTATGATCACACTTCTGGTAGTACTAGAATATCTGATAATGGTATAAGTTTACCTGGCTATTAGAAATTCTTCAAGTTTATGCCTGTTATACTCAAATCCTACACCTAGATTTTCATTTTCAGCTATAAAATGTTGAAGCTAAACCATAGCTTCCAAAAGGCAAA]




>consensus_7649#1
CTCCTTCAGCATGGAAGTCCCCTTGGTTCGTCGATATGCATTTTCAGGGTTCATACTTCA
CCAGCCCAGCTGATAGTTACGACGCACTAGGATTGATGAAGCAGATAAATGTGCAGACTG
CTGCTGCTTTGGTGGAAGCCCGTGAGGTACTGGCAAGCGGCGGCCAATGTGACAACATAA
GCTCTGATAAGGAAAACACGGGGAATCCAGATGCCAAGAAGGAACCAGGGACAACCAAAT
TGCAAACAAAAATCATGGCAGAGGGTAGAGTCCTGGATTTCGAGTGTACCACACCTGAAA
GATCATCAGACAAAAATGCTGGCAGCAATCTGGGAAGATATCTGAGCTCACCTATTCCTT
CGTCCCATCTTCTGAAAAGTTTTAGATAGCTTGATATACCATGTGAGGAATACACCTCAG
ACTTGCTGTAACAATCATTATGCGAACGATCTTGTTCATTACCGTAAAAAAAGATGCTTC
TTGTGACTTGCTCTCGACCTTACAATTTCAGCCCAGAAGCTACATTATTCCGCTCTATGA
TCACACTTCTGGTAGTACTAGAATATCTGATAATGGTATAAGTTTACCTGGCTATTAGAA
ATTCTTCAAGTTTATGCCTGTTATACTCAAATCCTACACCTAGATTTTCATTTTCAGCTA
TAAAATGTTGAAGCTAAACCATAGCTTCCAAAAGGCAAA

consensusID : consensus_7649#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [TTTTTTTTTTTTTTTTGACTCAATAATAAAAAATATATTTCCATCCGCTTAGATTTAGCCATAGTTCACCAAGTTATATGCTTGTTCCAAACACTTGAGCTCTGCATTTCAAATACATAAATTTTACAAAGGGCTAAATGTACCTGAAATTGCATATCTACAAACCAAGGGGACTTCCATGCTGAAGGAGATTCTAGTCCTCTTTTGATGCCTGGGGTATCAGCCAATCTAACAAGAGCAAGGCTTCAGAATTCAGAATGACATATTAAAAGGAACAGGGATCAAGTAATCTCTTCATACTTCAGTAGTAGGAAACAAGCGGGGTTTAATTCCCTAATGTAGTATCTTAAATGCGTTCATCAGTAGGATTCTAGGGTTCTCCCCTTGTCTCGTCCTCT]

[+] EMBL CA760390             [TTTTTTTTTTTTTTTTGACTCAATAATAAAAAATATATTTCCATCCGCTTAGATTTAGCCATAGTTCACCAAGTTATATGCTTGTTCCAAACACTTGAGCTCTGCATTTCAAATACATAAATTTTACAAAGGGCTAAATGTACCTGAAATTGCATATCTACAAACCAAGGGGACTTCCATGCTGAAGGAGATTCTAGTCCTCTTTTGATGCCTGGGGTATCAGCCAATCTAACAAGAGCAAGGCTTCAGAATTCAGAATGACATATTAAAAGGAACAGGGATCAAGTAATCTCTTCATACTTCAGTAGTAGGAAACAAGCGGGGTTTAATTCCCTAATGTAGTATCTTAAATGCGTTCATCAGTAGGATTCTAGGGTTCTCCCCTTGTCTCGTCCTCT]




>consensus_7649#2
TTTTTTTTTTTTTTTTGACTCAATAATAAAAAATATATTTCCATCCGCTTAGATTTAGCC
ATAGTTCACCAAGTTATATGCTTGTTCCAAACACTTGAGCTCTGCATTTCAAATACATAA
ATTTTACAAAGGGCTAAATGTACCTGAAATTGCATATCTACAAACCAAGGGGACTTCCAT
GCTGAAGGAGATTCTAGTCCTCTTTTGATGCCTGGGGTATCAGCCAATCTAACAAGAGCA
AGGCTTCAGAATTCAGAATGACATATTAAAAGGAACAGGGATCAAGTAATCTCTTCATAC
TTCAGTAGTAGGAAACAAGCGGGGTTTAATTCCCTAATGTAGTATCTTAAATGCGTTCAT
CAGTAGGATTCTAGGGTTCTCCCCTTGTCTCGTCCTCT

consensusID : consensus_7649#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [CTCTCGACCTTACAATTTCAGCCCAGAAGCTACATTATTCCGCTCANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF328648             [CTCTCGACCTTACAATTTCAGCCCAGAAGCTACATTATTCCGCTCANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7649#3
CTCTCGACCTTACAATTTCAGCCCAGAAGCTACATTATTCCGCTCANNAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7649#0      GGCGTACTGCAACAAATATAACTCTACTTATGATGATCTGCCAGGCAATTTACAACCTGC 60
consensus_7649#1      ------------------------------------------------------------
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ------------------------------------------------------------
                                                                                  

consensus_7649#0      AGGTATTCTTATTGAGCACAACGGTGATGATCTTGTTTCCCCAGATTATGGTAAAAACAC 120
consensus_7649#1      ------------------------------------------------------------
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ------------------------------------------------------------
                                                                                  

consensus_7649#0      CATGAAACAGAAGCAAAACACAAATATGGAATCTTTGTCAGTCTGTAAGGAGGGAGTGTC 180
consensus_7649#1      ------------------------------------------------------------
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ------------------------------------------------------------
                                                                                  

consensus_7649#0      TGCTAAAAAGCCTGCGGAACTTATTGTGGAGAAATCTTCAGCATGCATAAATGTGGATTA 240
consensus_7649#1      ------------------------------------------------------------
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ------------------------------------------------------------
                                                                                  

consensus_7649#0      TGAATATGTGAACATATTGGCTGATACCCCAGGCATCAAAAGAGGGCTAGAATCTCCTTC 300
consensus_7649#1      -----------------------------------------------------CTCCTTC 7
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ------------------------------------------------------------
                                                                                  

consensus_7649#0      AGCATGGAAGTCCCCTTGGTTTGTAGATATGCAATTTCAGGGTTCATACTTCGTCAGCCC 360
consensus_7649#1      AGCATGGAAGTCCCCTTGGTTCGTCGATATGCATTTTCAGGGTTCATACTTCACCAGCCC 67
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ------------------------------------------------------------
                                                                                  

consensus_7649#0      AGCTAATGGAAGTTACGATGCGCTAGGACTGGTGAAGCAGATAAATGTGCAGACTGCTGC 420
consensus_7649#1      AGCTGAT---AGTTACGACGCACTAGGATTGATGAAGCAGATAAATGTGCAGACTGCTGC 124
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ---------TTTTTTTTTTTTTTTTGACTCAATAATAAAAAATATATTTCCATCCGCTTA 51
                                                                                  

consensus_7649#0      TGCTTTGGCAGAAGCCCGTGAGGTGCTGGCAAGTGGTGGCCAATCTGAGAACATAAATTC 480
consensus_7649#1      TGCTTTGGTGGAAGCCCGTGAGGTACTGGCAAGCGGCGGCCAATGTGACAACATAAGCTC 184
consensus_7649#3      --------------CTCTCGAC---CTTACAATTTCAGCCCAG--AAGCTACATTA-TTC 40
consensus_7649#2      GATTTAGCCATAGTTCACCAAGTTATATGCTTGTTCCAAACACTTGAGCTCTGC-ATTTC 110
                                          *        *          **             *  **

consensus_7649#0      TGATAAGGAAAACCTGGAGAATCCAGATGCCAAGAAGGAACCAGGAGCAACAACCAAATT 540
consensus_7649#1      TGATAAGGAAAACACGGGGAATCCAGATGCCAAGAAGGAACCAGGG---ACAACCAAATT 241
consensus_7649#3      CGCTCANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAAAAAAAA 98
consensus_7649#2      AAATACATAAATTTTACAAAGGGCTAAATGTACCTGAAATTGCATATCTACAAACCAAGG 170
                         *    ***        *      *    *      *          * **   **  

consensus_7649#0      GCAAGCAAAAATCAAGACCGAGGGGAAAATCCT---GGATTTCAACGAATGTGCCACACC 597
consensus_7649#1      GCAAACAAAAATCATGGCAGAGGGTAGAGTCCT---GGATTT---CGAGTGTACCACACC 295
consensus_7649#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 127
consensus_7649#2      GGACTTCCATGCTGAAGGAGATTCTAGTCCTCTTTTGATGCCTGGGGTATCAGCCAATCT 230
                        *     *           *    *                                  

consensus_7649#0      TATAAGATCATCAGATAAAAAAGCTGGCAGCAGTCTGGGAAGATCTTTGAGCTCCCCTAT 657
consensus_7649#1      TGAAAGATCATCAGACAAAAATGCTGGCAGCAATCTGGGAAGATATCTGAGCTCACCTAT 355
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      AACAAGAGCAAGGCTTCAGAATTCAGAATGACATATTAAAAGGAACAGGGATCAAGTAAT 290
                                                                                  

consensus_7649#0      TCCTTCGTCCCATCTCCTGAAAAGTTTTCGATAGGTAGATATA-----TGAGGAATACAC 712
consensus_7649#1      TCCTTCGTCCCATCTTCTGAAAAGTTTTAGATAGCTTGATATACCATGTGAGGAATACAC 415
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      CTCTTCATACTTCAGTAGTAGGAAACAAGCGGGGTTTAATTCCCTAATGTAGTATCTTAA 350
                                                                                  

consensus_7649#0      CTCAGGTTAGCTGTAACAATCATTATGTGAAACTGGGAATCTTGGTCATTACCGGATTCT 772
consensus_7649#1      CTCAGACTTGCTGTAACAATCATTATGCGAA-----CGATCTTGTTCATTACCGTAAAAA 470
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ATGCGTTCATCAGTAGGATTC--TAGGGTTCTCCCCTTGTCTCGTCCTCT---------- 398
                                                                                  

consensus_7649#0      TTGNGATTATTACCGTAAAGAAAGCTGCTTCTTGGGACTGCTATCGCCAGCTTACAAT-T 831
consensus_7649#1      --AAGATGCTTCTTGTGACTTGCTCTCGACCTTACAATTTCAGCCCAGAAGCTACATTAT 528
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ------------------------------------------------------------
                                                                                  

consensus_7649#0      TCAGCCCAGAAGCTAGCTTCCAAAAGGCAGCAGAATACTTGGGCTGTTGAAGCTGTAGTA 891
consensus_7649#1      TCCGCTCTATGATCACACTTCTGGTAGTACTAGAATATCTGA--TAATGGTATAAGTTTA 586
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ------------------------------------------------------------
                                                                                  

consensus_7649#0      TTTAAAT-TTAGAAATTTT---AATTTATTCCTGTT-CAATATTATTTGACATTCCAGGC 946
consensus_7649#1      CCTGGCTATTAGAAATTCTTCAAGTTTATGCCTGTTATACTCAAATCCTACACCTAGATT 646
consensus_7649#3      ------------------------------------------------------------
consensus_7649#2      ------------------------------------------------------------
                                                                                  

consensus_7649#0      CTCTTTGTGGATT---------TGATTCAAAATATCATTTTGCAAAAAAAAA- 989
consensus_7649#1      TTCATTTTCAGCTATAAAATGTTGAAGCTAAACCATAGCTTCCAAAAGGCAAA 699
consensus_7649#3      -----------------------------------------------------
consensus_7649#2      -----------------------------------------------------