cluster # 7657

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Oryza sativa
cluster # 7657 cluster # 7657 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7657#0 length = 1056 sequences # 4

consensus_7657#1 length = 328 sequences # 1

consensusID : consensus_7657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1056
fasta sequence

                              [TTCCTCGAGCACTGTTGGCCTACTGGAAACCACCTCGCCGCAGATCTGCTTCCGCCTCCGCCATGGCGTCATCGGCATTGCCCTGCGCCGCCGCGCTCTTCCTCGTCCTCCTCCTCGCGCCGCTGCTCGCCTCCGCCGAGTCGCCCATCTCGCTGCCGCCTGCGTCCGCGCCCACCGCCTCCACCCCGGCTGCAGACGAGCGCCTCCACCCCGCCGACGCCGCCCTCGCTCCGTCGCAGCCGCCTTCCGAGGCCTCCTCCTCCGCCGCCGCGCTCTCCCCTCCCGCGCCTCCTGAGACCTCCCCTCTCCCCGCGCCCTCCCACTCGCCCCCCGTCCCGCATTCCGCGGCACCCGAGCCGTCGCCCATGGAGCATTCCGCCGCGTCCGCGCCGGCCCCCTCCGCCGCCAAGGCCAAGCAGGGCGGCGACGACGAGGAGGACGACGACGATAAGGAGAAAGACAAGGAGGAGAAGCCGTCAACACCGTCGCCTGCCCCCGCCGCCGAGGAGATAAAGGCCGCCACCGCGGGCGACAAGGCGGGGGAGGAGGACGGGGAGACGGAGAGGCACGAGTTGAACGGCGGCAAGAAGGCCGGCGTCGTGGTCGGCGCCTTCTCGGCCGCCGCGGTGGTGGGTCTAGCCGCCGTCGTGTGGAAGAAGCGGCAGGCCAACATCCGGCGGTCCAGGTACGCCGACTACTCCGCCCGCCTCGAGCTCGTCTGATCGTTCGCCGGAGCTCCTCACCGGAGTAGTACACTACATCTACATCTACAGTAGCATCAGCAGTACAACCCCACCATATACGTTCGTCGTC-TCAGTGCAGCAGCTCCGCAGATACACAGATT-CGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGATGTTAGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTTTTCTGTG-AAAAAAAAAGAGGAATAACGTAATGGAGTGATATGGAGATGGATACACGCAGTTTTGTATAAAAAAAAAAAAAAAAAAAAAGGCCACAT]

[+] EMBL AK109338             [TTCCTCGAGCACTGTTGGCCTACTGGAAACCACCTCGCCGCAGATCTGCTTCCGCCTCCGCCATGGCGTCATCGGCATTGCCCTGCGCCGCCGCGCTCTTCCTCGTCCTCCTCCTCGCGCCGCTGCTCGCCTCCGCCGAGTCGCCCATCTCGCTGCCGCCTGCGTCCGCGCCCACCGCCTCCACCCCGGCTGCAGACGAGCGCCTCCACCCCGCCGACGCCGCCCTCGCTCCGTCGCAGCCGCCTTCCGAGGCCTCCTCCTCCGCCGCCGCGCTCTCCCCTCCCGCGCCTCCTGAGACCTCCCCTCTCCCCGCGCCCTCCCACTCGCCCCCCGTCCCGCATTCCGCGGCACCCGAGCCGTCGCCCATGGAGCATTCCGCCGCGTCCGCGCCGGCCCCCTCCGCCGCCAAGGCCAAGCAGGGCGGCGACGACGAGGAGGACGACGACGATAAGGAGAAAGACAAGGAGGAGAAGCCGTCAATACCGTCGCCTGCCCCCGCCGCCGAGGAGATAAAGGCCGCCACCGCGGGCGACAAGGCGGGGGAGGAGGACGGGGAGACGGAGAGGCACGAGTTGAACGGCGGCAAGAAGGCCGGCGTCGTGGTCGGCGCCTTCTCGGCCGCCGCGGTGGTGGGTCTAGCCGCCGTCGTGTGGAAGAAGCGGCAGGCCAACATCCGGCGGTCCAGGTACGCCGACTACTCCGCCCGCCTCGAGCTCGTCTGATCGTTCGCCGGAGCTCCTCACCGGAGTAGTACACTACATCTACATCTACAGTAGCATCAGCAGTACAACCCCACCATATACGTTCGTCGTC TCAGTGCAGCAGCTCCGCAGATACACAGATT CGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGATGTTAGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTTTTCTGTG AAAAAAAAAGAGGAATAACGTAATGGAGTGATATGGAGATGGATACACGCAGTTTTGTATAAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK060985             [                                   CGCCGCAGATCTGCTTCCGCCTCCGCCATGGCGTCATCGGCATTGCCCTGCGCCGCCGCGCTCTTCCTCGTCCTCCTCCTCGCGCCGCTGCTCGCCTCCGCCGAGTCGCCCATCTCGCTGCCGCCTGCGTCCGCGCCCACCGCCTCCACCCCGGCTGCAGACGAGCGCCTCCACCCCGCCGACGCCGCCCTCGCTCCGTCGCAGCCGCCTTCCGAGGCCTCCTCCTCCGCCGCCGCGCTCTCCCCTCCCGCGCCTCCTGAGACCTCCCCTCTCCCCGCGCCCTCCCACTCGCCCCCCGTCCCGCATTCCGCGGCACCCGAGCCGTCGCCCATGGAGCATTCCGCCGCGTCCGCGCCGGCCCCCTCCGCCGCCAAGGCCAAGCAGGGCGGCGACGACGAGGAGGACGACGACGATAAGGAGAAAGACAAGGAGGAGAAGCCGTCAACACCGTCGCCTGCCCCCGCCGCCGAGGAGATAAAGGCCGCCACCGCGGGCGACAAGGCGGGGGAGGAGGACGGGGAGACGGAGAGGCACGAGTTGAACGGCGGCAAGAAGGCCGGCGTCGTGGTCGGCGCCTTCTCGGCCGCCGCGGTGGTGGGTCTAGCCGCCGTCGTGTGGAAGAAGCGGCAGGCCAACATCCGGCGGTCCAGGTACGCCGACTACTCCGCCCGCCTCGAGCTCGTCTGATCGTTCGCCGGAGCTCCTCACCGGAGTAGTACACTACATCTACATCTACAGTAGCATCAGCAGTACAACCCCACCATATACGTTCGTCGTC TCAGTGCAGCAGCTCCGCAGATACACAGATT CGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGATGTTAGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTTTTCTGTGAAAAAAAAAAGAGGAATAACG                                                                     ]
[+] EMBL OSS15803A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGAAGCCGTCAACACCGTCGCCTGCCCCCGCCGCCGAGGAGATAAAGGCCGCCACCGCGGGCGACAAGGCGGGGGAGGAGGACGGGGAGACGGAGAGGCACGAGTTGAACGGCGGCAAGAAGGCCGGCGTCGTGGTCGGCGCCTTCTCGGCCGCCGCGGTGGTGGGTCTAGCCGCCGTCGTGTGGAAGAAGCGGCAGGCCAACATCCGGCGGTCCAGGTACGCCGACTACTCCGCCCGCCTCGAGCTCGTCTGATCGTTCGCCGGAGCTCCTCACCGGAGTAGTACACTACATCTACATCTACAGTAGCATCAGCAGTACAACCCCACCATATACGTTCGTCGTCTTCAGTTCAGCAGTTCCG AGGTACACAGATTNGGTTGCATGNCTTTCATGGGCG GGTTNAAATTTGTTCTGTNATTCGNGA ATTTTAGATTTTTCATTT AATCTTGTGTTAATAATTTTTGG GTTGAA                                                                                                                 ]
[+] EMBL AU173276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGCAGTACAACCCCACCATATACGTTCGTCGTC TCAGTGCAGCAGCTCCGCAGATACACAGATT CGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGATGTTAGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTTTTNTGTG AAAAAA                                                                                   ]




>consensus_7657#0
TTCCTCGAGCACTGTTGGCCTACTGGAAACCACCTCGCCGCAGATCTGCTTCCGCCTCCG
CCATGGCGTCATCGGCATTGCCCTGCGCCGCCGCGCTCTTCCTCGTCCTCCTCCTCGCGC
CGCTGCTCGCCTCCGCCGAGTCGCCCATCTCGCTGCCGCCTGCGTCCGCGCCCACCGCCT
CCACCCCGGCTGCAGACGAGCGCCTCCACCCCGCCGACGCCGCCCTCGCTCCGTCGCAGC
CGCCTTCCGAGGCCTCCTCCTCCGCCGCCGCGCTCTCCCCTCCCGCGCCTCCTGAGACCT
CCCCTCTCCCCGCGCCCTCCCACTCGCCCCCCGTCCCGCATTCCGCGGCACCCGAGCCGT
CGCCCATGGAGCATTCCGCCGCGTCCGCGCCGGCCCCCTCCGCCGCCAAGGCCAAGCAGG
GCGGCGACGACGAGGAGGACGACGACGATAAGGAGAAAGACAAGGAGGAGAAGCCGTCAA
CACCGTCGCCTGCCCCCGCCGCCGAGGAGATAAAGGCCGCCACCGCGGGCGACAAGGCGG
GGGAGGAGGACGGGGAGACGGAGAGGCACGAGTTGAACGGCGGCAAGAAGGCCGGCGTCG
TGGTCGGCGCCTTCTCGGCCGCCGCGGTGGTGGGTCTAGCCGCCGTCGTGTGGAAGAAGC
GGCAGGCCAACATCCGGCGGTCCAGGTACGCCGACTACTCCGCCCGCCTCGAGCTCGTCT
GATCGTTCGCCGGAGCTCCTCACCGGAGTAGTACACTACATCTACATCTACAGTAGCATC
AGCAGTACAACCCCACCATATACGTTCGTCGTCTCAGTGCAGCAGCTCCGCAGATACACA
GATTCGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGATGTT
AGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTT
TTCTGTGAAAAAAAAAGAGGAATAACGTAATGGAGTGATATGGAGATGGATACACGCAGT
TTTGTATAAAAAAAAAAAAAAAAAAAAAGGCCACAT

consensusID : consensus_7657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [ATCTACATCTACAGTAGCATCAGCAGTACAACCCCACCATATACGTTCGTCGTCTCAGTGCAGCAGCTCCGCAGATACCAGATTCGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGATGTTAGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTTTTCTGTGAAAAAAAAAGAGGAATAACGTAATGGAGTGATATGGAGATGGATACCACCGCAGTTTTGTATACCTAGTAGAATGATATACTGCTACTCCTAATAATTTTGATTAGAACCCAAAAAAAAAA]

[+] EMBL BI805177             [ATCTACATCTACAGTAGCATCAGCAGTACAACCCCACCATATACGTTCGTCGTCTCAGTGCAGCAGCTCCGCAGATACCAGATTCGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGATGTTAGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTTTTCTGTGAAAAAAAAAGAGGAATAACGTAATGGAGTGATATGGAGATGGATACCACCGCAGTTTTGTATACCTAGTAGAATGATATACTGCTACTCCTAATAATTTTGATTAGAACCCAAAAAAAAAA]




>consensus_7657#1
ATCTACATCTACAGTAGCATCAGCAGTACAACCCCACCATATACGTTCGTCGTCTCAGTG
CAGCAGCTCCGCAGATACCAGATTCGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCT
CCTGTGATCCGCGAGATGTTAGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGT
TGAAACCATTAAAATTCTTTTTCTGTGAAAAAAAAAGAGGAATAACGTAATGGAGTGATA
TGGAGATGGATACCACCGCAGTTTTGTATACCTAGTAGAATGATATACTGCTACTCCTAA
TAATTTTGATTAGAACCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7657#0      TTCCTCGAGCACTGTTGGCCTACTGGAAACCACCTCGCCGCAGATCTGCTTCCGCCTCCG 60
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      CCATGGCGTCATCGGCATTGCCCTGCGCCGCCGCGCTCTTCCTCGTCCTCCTCCTCGCGC 120
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      CGCTGCTCGCCTCCGCCGAGTCGCCCATCTCGCTGCCGCCTGCGTCCGCGCCCACCGCCT 180
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      CCACCCCGGCTGCAGACGAGCGCCTCCACCCCGCCGACGCCGCCCTCGCTCCGTCGCAGC 240
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      CGCCTTCCGAGGCCTCCTCCTCCGCCGCCGCGCTCTCCCCTCCCGCGCCTCCTGAGACCT 300
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      CCCCTCTCCCCGCGCCCTCCCACTCGCCCCCCGTCCCGCATTCCGCGGCACCCGAGCCGT 360
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      CGCCCATGGAGCATTCCGCCGCGTCCGCGCCGGCCCCCTCCGCCGCCAAGGCCAAGCAGG 420
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      GCGGCGACGACGAGGAGGACGACGACGATAAGGAGAAAGACAAGGAGGAGAAGCCGTCAA 480
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      CACCGTCGCCTGCCCCCGCCGCCGAGGAGATAAAGGCCGCCACCGCGGGCGACAAGGCGG 540
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      GGGAGGAGGACGGGGAGACGGAGAGGCACGAGTTGAACGGCGGCAAGAAGGCCGGCGTCG 600
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      TGGTCGGCGCCTTCTCGGCCGCCGCGGTGGTGGGTCTAGCCGCCGTCGTGTGGAAGAAGC 660
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      GGCAGGCCAACATCCGGCGGTCCAGGTACGCCGACTACTCCGCCCGCCTCGAGCTCGTCT 720
consensus_7657#1      ------------------------------------------------------------
                                                                                  

consensus_7657#0      GATCGTTCGCCGGAGCTCCTCACCGGAGTAGTACACTACATCTACATCTACAGTAGCATC 780
consensus_7657#1      ---------------------------------------ATCTACATCTACAGTAGCATC 21
                                                             *********************

consensus_7657#0      AGCAGTACAACCCCACCATATACGTTCGTCGTCTCAGTGCAGCAGCTCCGCAGATACACA 840
consensus_7657#1      AGCAGTACAACCCCACCATATACGTTCGTCGTCTCAGTGCAGCAGCTCCGCAGATAC-CA 80
                      ********************************************************* **

consensus_7657#0      GATTCGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGATGTT 900
consensus_7657#1      GATTCGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGATGTT 140
                      ************************************************************

consensus_7657#0      AGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTT 960
consensus_7657#1      AGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTT 200
                      ************************************************************

consensus_7657#0      TTCTGTGAAAAAAAAAGAGGAATAACGTAATGGAGTGATATGGAGATGGATACA--CGCA 1018
consensus_7657#1      TTCTGTGAAAAAAAAAGAGGAATAACGTAATGGAGTGATATGGAGATGGATACCACCGCA 260
                      *****************************************************   ****

consensus_7657#0      GTTTTGTATAAAAAAAAAAAAAAAAAAAAAGGCCACAT---------------------- 1056
consensus_7657#1      GTTTTGTATACCTAGTAGAATGATATACTGCTACTCCTAATAATTTTGATTAGAACCCAA 320
                      **********   *  * **  * * *      * * *                      

consensus_7657#0      --------
consensus_7657#1      AAAAAAAA 328